Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 4.8e-171 604.4 299 100.0
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.1e-133 480.3 269 85.5
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 1.1e-130 470.3 295 76.9
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.9e-130 469.5 291 77.0
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 2.4e-130 469.2 291 77.0
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 4.6e-129 464.9 291 75.6
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 3.9e-128 461.8 291 75.9
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 5.1e-128 461.5 291 76.3
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 6.6e-128 461.1 297 74.1
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 1.1e-127 460.3 299 74.6
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.5e-127 459.1 291 73.9
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 3.3e-127 458.8 293 74.4
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 4.3e-127 458.4 294 74.8
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 4.3e-127 458.4 295 74.2
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 4.3e-127 458.4 292 75.3
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 5.6e-127 458.0 291 73.9
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 5.6e-127 458.0 302 74.5
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 1.2e-126 456.8 295 74.9
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.6e-126 456.4 291 74.6
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 2.8e-126 455.7 291 74.2
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 3.6e-126 455.3 294 74.5
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 4.7e-126 454.9 298 75.5
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 4.7e-126 454.9 291 74.6
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 6.2e-126 454.5 291 73.9
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 8.1e-126 454.1 294 73.8
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.8e-125 453.0 294 73.8
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 2.4e-125 452.6 294 74.5
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 3.1e-125 452.2 297 72.1
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 3.1e-125 452.2 291 74.6
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 4.0e-125 451.8 291 73.5
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 4.0e-125 451.8 291 75.9
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.2e-124 450.3 291 73.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.5e-124 449.9 292 75.0
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 2.0e-124 449.5 291 72.9
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 2.6e-124 449.1 291 73.2
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 3.4e-124 448.7 294 73.5
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 4.4e-124 448.4 292 75.0
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 5.8e-124 448.0 291 72.9
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 7.6e-124 447.6 294 72.1
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 7.6e-124 447.6 293 75.1
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.7e-123 446.4 294 73.8
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 2.2e-123 446.0 296 71.6
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 3.8e-123 445.3 291 72.9
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 4.9e-123 444.9 300 73.0
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.9e-122 443.0 299 72.6
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 2.4e-122 442.6 296 69.9
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 2.4e-122 442.6 295 70.5
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 3.2e-122 442.2 294 72.1
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 4.2e-122 441.8 294 71.4
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 7.1e-122 441.0 292 73.3
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 7.1e-122 441.0 295 72.5
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 1.2e-121 440.3 324 66.4
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 2.1e-121 439.5 296 73.6
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 2.1e-121 439.5 291 71.8
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 2.7e-121 439.1 292 72.6
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 3.5e-121 438.7 293 71.7
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 3.5e-121 438.7 296 73.6
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 3.5e-121 438.7 292 72.9
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 3.5e-121 438.7 291 72.5
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 6.0e-121 438.0 291 71.8
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 6.0e-121 438.0 291 73.2
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 7.8e-121 437.6 295 72.2
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 1.7e-120 436.4 291 72.9
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 3.0e-120 435.6 294 71.8
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 8.7e-120 434.1 291 70.8
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 8.7e-120 434.1 291 70.8
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 8.7e-120 434.1 291 70.8
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 8.7e-120 434.1 291 72.2
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 1.1e-119 433.7 291 71.1
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.1e-119 433.7 291 71.8
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 2.5e-119 432.6 291 70.8
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 3.3e-119 432.2 291 70.4
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 3.3e-119 432.2 322 66.1
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 7.3e-119 431.0 293 71.3
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.3e-118 430.3 326 66.3
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 8.1e-118 427.6 293 70.6
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 1.8e-117 426.4 293 69.6
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 2.4e-117 426.0 295 69.8
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 3.1e-117 425.6 276 73.6
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 5.3e-117 424.9 291 70.1
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 3.4e-116 422.2 293 69.6
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 3.4e-116 422.2 279 72.4
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 3.0e-112 409.1 289 68.5
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 4.3e-111 405.2 302 66.2
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 3.7e-110 402.1 269 74.3
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 1.1e-109 400.6 267 73.0
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 6.9e-109 397.9 297 66.3
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.2e-108 397.1 291 69.8
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.7e-107 393.3 243 75.3
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 3.8e-107 392.1 272 69.1
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 8.4e-107 391.0 233 78.1
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.2e-105 387.1 249 75.5
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 2.3e-104 382.9 291 65.3
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 1.1e-103 380.6 232 77.2
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.9e-103 379.8 235 74.0
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 1.4e-98 363.6 221 76.5
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 6.5e-91 338.2 293 58.0
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 3.2e-90 335.9 234 71.4
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 1.1e-87 327.4 295 56.3
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 5.7e-87 325.1 292 55.1
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 4.7e-81 305.4 281 60.9
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 5.7e-79 298.5 207 68.6
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 9.7e-79 297.7 402 45.8
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 1.8e-64 250.4 272 50.7
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.2e-57 227.6 258 52.7
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 5.2e-56 222.2 255 46.3
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 7.5e-55 218.4 292 38.7
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 7.5e-55 218.4 153 71.9
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 4.0e-48 196.1 199 54.3
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 7.5e-47 191.8 119 77.3
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 1.4e-45 187.6 117 70.9
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 5.2e-40 169.1 147 61.2
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.1e-32 144.8 175 48.6
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 8.9e-32 141.7 111 61.3
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 2.0e-31 140.6 238 38.7
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.7e-30 137.5 82 85.4
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 4.0e-24 116.3 69 79.7
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 1.9e-18 97.4 55 80.0
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 4.7e-17 92.8 60 71.7
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 9.9e-15 85.1 48 77.1
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.2e-14 84.0 46 76.1
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 2.1e-12 77.4 70 58.6
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 2.7e-12 77.0 193 31.6
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 3.0e-11 73.6 110 40.0
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.9e-11 73.2 59 57.6
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 6.6e-11 72.4 46 76.1
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 3.6e-09 66.6 53 64.2
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 3.4e-07 60.1 160 30.0
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 1.3e-06 58.2 44 61.4


User provided reference genes

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