Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0137500 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 3.2e-95 351.7 171 100.0
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 3.9e-40 168.7 171 50.3
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 1.9e-39 166.4 169 49.1
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 2.1e-38 162.9 168 48.8
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 3.6e-38 162.2 168 48.8
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 4.8e-38 161.8 169 47.3
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 6.2e-38 161.4 169 48.5
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 8.1e-38 161.0 169 48.5
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 8.1e-38 161.0 169 49.1
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 8.1e-38 161.0 171 47.4
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 1.1e-37 160.6 173 49.1
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 1.4e-37 160.2 171 48.0
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 1.4e-37 160.2 171 48.5
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 1.4e-37 160.2 171 49.1
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 1.8e-37 159.8 174 47.7
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 2.4e-37 159.5 171 46.8
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 2.4e-37 159.5 168 48.2
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 3.1e-37 159.1 171 48.0
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 3.1e-37 159.1 171 48.0
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 3.1e-37 159.1 169 47.9
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 3.1e-37 159.1 169 46.7
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 4.0e-37 158.7 171 46.8
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 5.3e-37 158.3 168 45.2
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 6.9e-37 157.9 171 48.5
Cpa.g.sc3890.1 Carica papaya HOM05D003188 ORTHO05D003602 6.9e-37 157.9 169 47.3
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 6.9e-37 157.9 174 46.0
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 6.9e-37 157.9 169 47.3
Dinv36902 Davidia involucrata HOM05D003188 ORTHO05D003602 6.9e-37 157.9 171 48.0
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 1.2e-36 157.1 169 47.9
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 1.2e-36 157.1 171 46.8
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.5e-36 156.8 169 46.7
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 2.0e-36 156.4 169 46.2
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 2.0e-36 156.4 169 46.7
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 2.0e-36 156.4 168 46.4
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 2.0e-36 156.4 171 46.2
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 2.6e-36 156.0 171 45.6
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 2.6e-36 156.0 171 45.6
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 3.4e-36 155.6 169 45.6
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 3.4e-36 155.6 169 45.6
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 4.4e-36 155.2 169 46.2
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 4.4e-36 155.2 174 46.0
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 4.4e-36 155.2 169 46.7
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 5.8e-36 154.8 167 46.7
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 5.8e-36 154.8 169 45.6
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 5.8e-36 154.8 169 47.3
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 5.8e-36 154.8 169 47.9
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 5.8e-36 154.8 169 47.9
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 9.9e-36 154.1 167 46.7
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 9.9e-36 154.1 171 47.4
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 9.9e-36 154.1 168 45.8
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 1.3e-35 153.7 169 46.7
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 1.3e-35 153.7 169 48.5
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 1.3e-35 153.7 169 46.2
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 1.7e-35 153.3 168 46.4
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 1.7e-35 153.3 169 46.2
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.7e-35 153.3 169 46.2
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 1.7e-35 153.3 169 46.2
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 1.7e-35 153.3 164 46.3
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 2.2e-35 152.9 168 45.8
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.2e-35 152.9 169 46.2
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 2.2e-35 152.9 169 45.6
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 2.9e-35 152.5 168 46.4
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 2.9e-35 152.5 168 45.2
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 4.9e-35 151.8 168 45.2
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 4.9e-35 151.8 171 46.2
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 4.9e-35 151.8 171 46.2
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 4.9e-35 151.8 164 46.3
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 8.4e-35 151.0 171 45.6
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 8.4e-35 151.0 173 45.7
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 8.4e-35 151.0 170 45.9
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 8.4e-35 151.0 168 45.2
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 1.4e-34 150.2 168 44.0
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 1.4e-34 150.2 169 45.6
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 1.9e-34 149.8 170 45.9
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 1.9e-34 149.8 168 44.6
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 1.9e-34 149.8 167 44.9
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 2.4e-34 149.4 169 45.6
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 2.4e-34 149.4 174 43.7
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 2.4e-34 149.4 166 46.4
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 2.4e-34 149.4 168 44.6
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 3.2e-34 149.1 168 44.6
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 3.2e-34 149.1 169 45.0
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 4.2e-34 148.7 168 44.6
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 4.2e-34 148.7 170 45.3
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 7.1e-34 147.9 172 45.3
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 7.1e-34 147.9 168 44.6
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 7.1e-34 147.9 168 47.0
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 9.3e-34 147.5 167 43.7
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 1.2e-33 147.1 168 44.0
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 1.2e-33 147.1 169 44.4
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 1.6e-33 146.7 168 45.2
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 2.1e-33 146.4 169 43.8
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 2.1e-33 146.4 170 44.7
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 2.1e-33 146.4 168 46.4
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 2.7e-33 146.0 170 44.1
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 3.5e-33 145.6 173 45.1
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.5e-33 145.6 177 44.1
Gohir.A07G084654 Gossypium hirsutum HOM05D003188 ORTHO05D003602 3.5e-33 145.6 171 46.2
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 4.6e-33 145.2 167 44.3
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 7.8e-33 144.4 166 46.4
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 7.8e-33 144.4 170 44.7
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 1.0e-32 144.1 168 43.5
Atru.chr3.1253 Acer truncatum HOM05D003188 ORTHO05D003602 1.3e-32 143.7 171 45.0
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 1.7e-32 143.3 168 44.0
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.7e-32 143.3 168 44.0
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 2.3e-32 142.9 163 44.2
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 3.0e-32 142.5 178 42.7
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 3.0e-32 142.5 170 44.7
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.9e-32 142.1 168 43.5
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 3.9e-32 142.1 168 43.5
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 3.9e-32 142.1 168 43.5
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 3.9e-32 142.1 168 43.5
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 6.6e-32 141.4 173 43.4
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 6.6e-32 141.4 172 45.3
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 1.5e-31 140.2 163 44.2
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.5e-31 140.2 163 44.2
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 1.9e-31 139.8 163 44.8
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 3.3e-31 139.0 186 39.8
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 4.3e-31 138.7 201 39.3
FvH4_7g21490 Fragaria vesca HOM05D003188 ORTHO05D003602 5.6e-31 138.3 174 44.3
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.1e-30 136.3 174 43.7
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.1e-30 136.3 174 43.7
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 4.8e-30 135.2 174 42.5
ATR0580G381 Amborella trichopoda HOM05D003188 ORTHO05D003602 8.1e-30 134.4 171 41.5
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 1.1e-29 134.0 166 45.2
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 3.1e-29 132.5 168 42.3
FvH4_4g17460 Fragaria vesca HOM05D003188 ORTHO05D003602 3.1e-29 132.5 145 45.5
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 5.3e-29 131.7 165 43.6
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.2e-28 130.6 167 38.3
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 1.5e-28 130.2 167 37.7
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 2.0e-28 129.8 162 42.0
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 2.6e-28 129.4 168 41.7
Sp7g18890 Schrenkiella parvula HOM05D003188 ORTHO05D003602 3.4e-28 129.0 168 42.3
CBR_g8498 Chara braunii HOM05D003188 ORTHO05D003602 9.9e-28 127.5 176 39.2
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 1.3e-27 127.1 169 43.8
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 6.4e-27 124.8 165 40.0
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 6.4e-27 124.8 165 40.0
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 6.4e-27 124.8 171 41.5
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 8.4e-27 124.4 167 40.7
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 2.4e-26 122.9 165 40.6
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 3.2e-26 122.5 168 41.7
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 3.2e-26 122.5 177 40.1
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 5.4e-26 121.7 171 39.2
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 1.6e-25 120.2 167 40.1
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 2.7e-25 119.4 241 33.2
FvH4_6g19571 Fragaria vesca HOM05D003188 ORTHO05D003602 7.9e-25 117.9 149 43.0
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 7.9e-25 117.9 175 38.9
BcaC09g51427 Brassica carinata HOM05D003188 ORTHO05D003602 1.0e-24 117.5 167 39.5
C01p13220 Brassica napus HOM05D003188 ORTHO05D003602 1.0e-24 117.5 167 39.5
QL10p022977 Quercus lobata HOM05D003188 ORTHO05D003602 1.8e-24 116.7 127 44.9
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.0e-24 115.9 175 39.4
Oeu050638.1 Olea europaea HOM05D003188 ORTHO05D003602 3.9e-24 115.5 122 46.7
Cpa.g.sc79.50 Carica papaya HOM05D003188 ORTHO05D003602 6.7e-24 114.8 165 37.6
vmacro10787 Vaccinium macrocarpon HOM05D003188 ORTHO05D003602 1.1e-23 114.0 139 44.6
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 1.5e-23 113.6 169 38.5
Zm00001eb223630 Zea mays HOM05D003188 ORTHO05D003602 1.6e-22 110.2 134 44.8
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 1.1e-21 107.5 166 39.2
Lj9C432G3 Lonicera japonica HOM05D003188 ORTHO05D003602 4.5e-20 102.1 144 41.0
FAN11G0282 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.0e-19 100.9 152 37.5
Sed0006028 Sechium edule HOM05D003188 ORTHO05D003602 4.9e-19 98.6 173 33.5
FAN06G5104 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.9e-18 96.7 141 41.8
FAN06G4431 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.2e-17 94.0 141 41.8
SalBow1G5101 Salvia bowleyana HOM05D003188 ORTHO05D003602 2.7e-17 92.8 95 49.5
EL10Ac4g09232 Beta vulgaris HOM05D003188 ORTHO05D003602 3.5e-17 92.4 171 31.6
Os11g0137400 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 1.0e-16 90.9 82 58.5
Rhsim09G0110300 Rhododendron simsii HOM05D003188 ORTHO05D003602 1.0e-16 90.9 88 52.3
SHI18942 Sapria himalayana HOM05D003188 ORTHO05D003602 2.3e-16 89.7 90 50.0
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 9.6e-15 84.3 87 48.3
Os12g0140266 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 1.1e-13 80.9 126 38.1
FAN12G3292 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.4e-13 80.5 115 40.0
QL10p058686 Quercus lobata HOM05D003188 ORTHO05D003602 1.8e-13 80.1 53 60.4
Potri.015G051000 Populus trichocarpa HOM05D003188 ORTHO05D003602 4.1e-13 79.0 80 42.5
Sc02g0004270 Simmondsia chinensis HOM05D003188 ORTHO05D003602 6.9e-13 78.2 87 42.5
CSS0039000 Camellia sinensis var. sinensis HOM05D003188 ORTHO05D003602 9.0e-13 77.8 53 56.6
MCO04G055 Micromonas commoda HOM05D003188 ORTHO05D003602 5.8e-12 75.1 163 27.0
FAN04G1160 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.0e-11 74.3 95 40.0
Cre11.g481550 Chlamydomonas reinhardtii HOM05D003188 ORTHO05D003602 2.2e-11 73.2 173 30.6
FAN04G0824 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.8e-08 63.5 55 56.4
arahy.Tifrunner.gnm1.ann1.NH5Z51 Arachis hypogaea HOM05D003188 ORTHO05D003602 3.3e-07 59.3 43 58.1
GSVIVG01012261001 Vitis vinifera HOM05D003188 ORTHO05D003602 7.4e-07 58.2 176 29.0
FAN14G3422 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.6e-06 57.0 38 57.9


User provided reference genes

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