Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 8.7e-184 647.5 519 100.0
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 2.4e-93 347.1 506 58.7
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 2.1e-20 104.8 549 38.3
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 1.3e-17 95.5 257 37.7
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 3.1e-16 90.9 256 36.7
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 5.9e-15 86.7 244 37.7
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 5.9e-15 86.7 244 37.7
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 3.8e-14 84.0 254 33.1
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 5.0e-14 83.6 256 33.2
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 5.0e-14 83.6 256 33.2
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 2.1e-12 78.2 271 37.3
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 3.6e-12 77.4 258 34.1
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 4.7e-12 77.0 261 34.5
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 4.7e-12 77.0 261 34.5
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 2.3e-11 74.7 270 34.1
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.0e-10 71.6 584 30.5
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.0e-10 71.6 274 35.0
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.0e-10 71.6 354 30.5
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 3.3e-10 70.9 267 34.5
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 5.7e-10 70.1 259 36.3
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.7e-10 70.1 552 38.2
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 9.7e-10 69.3 106 49.1
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.3e-09 68.9 251 34.7
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.7e-09 68.6 252 34.5
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 3.7e-09 67.4 262 33.2
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 4.8e-09 67.0 258 34.5
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 4.8e-09 67.0 106 48.1
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 4.8e-09 67.0 269 32.0
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 6.3e-09 66.6 275 33.1
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 8.2e-09 66.2 223 34.1
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 8.2e-09 66.2 549 28.4
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.1e-08 65.9 262 33.2
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 1.1e-08 65.9 276 31.2
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 1.4e-08 65.5 261 31.0
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 1.4e-08 65.5 261 31.0
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 1.4e-08 65.5 261 31.0
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.4e-08 65.5 261 31.4
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 1.4e-08 65.5 267 34.1
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.8e-08 65.1 260 31.9
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 2.4e-08 64.7 261 31.0
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 2.4e-08 64.7 256 33.6
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 4.1e-08 63.9 213 34.7
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 4.1e-08 63.9 248 33.1
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 9.1e-08 62.8 255 33.3
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 1.2e-07 62.4 579 32.6
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 1.2e-07 62.4 218 32.6
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 2.7e-07 61.2 268 32.8
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 2.7e-07 61.2 260 31.2
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.5e-07 60.8 255 34.1
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 3.5e-07 60.8 256 30.9
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 5.9e-07 60.1 251 34.7
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 7.7e-07 59.7 257 31.1
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.7e-06 58.5 262 30.2
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 2.2e-06 58.2 209 32.1
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 3.8e-06 57.4 225 30.2
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 5.0e-06 57.0 265 28.3
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 6.5e-06 56.6 277 30.0
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 6.5e-06 56.6 278 31.3
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 8.5e-06 56.2 283 32.9


User provided reference genes

Program Settings