Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 0.0e+00 1186.8 595 100.0
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 0.0e+00 1123.6 595 94.6
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 0.0e+00 1119.8 595 94.1
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.5e-288 995.0 565 85.3
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 7.4e-288 993.4 562 86.5
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 9.6e-288 993.0 565 85.1
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 9.6e-288 993.0 567 85.2
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.3e-287 992.6 606 81.2
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.3e-287 992.6 557 86.4
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.6e-287 992.3 616 79.4
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 2.1e-287 991.9 558 86.6
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.1e-287 991.9 558 86.6
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 8.2e-287 989.9 616 79.2
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.4e-286 989.2 572 84.3
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.4e-286 989.2 559 86.0
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.4e-286 988.4 607 81.4
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.4e-286 988.4 568 84.5
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 3.1e-286 988.0 595 81.5
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.0e-286 986.5 566 85.0
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.5e-285 985.7 607 81.5
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.5e-285 985.7 600 81.5
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 2.6e-285 984.9 607 81.2
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 3.4e-285 984.6 568 84.3
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 5.8e-285 983.8 608 80.3
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.0e-284 983.0 595 82.4
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.7e-284 982.2 558 84.9
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.9e-284 981.5 558 85.1
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 3.8e-284 981.1 558 84.8
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.8e-284 981.1 607 81.4
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 3.8e-284 981.1 593 81.5
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 4.9e-284 980.7 565 84.6
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 4.9e-284 980.7 598 80.9
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 4.9e-284 980.7 558 84.9
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 6.5e-284 980.3 589 81.8
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 8.4e-284 979.9 557 85.5
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.1e-283 979.5 606 80.4
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 2.5e-283 978.4 558 85.1
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.2e-283 977.6 568 83.8
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 5.5e-283 977.2 596 81.4
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 5.5e-283 977.2 564 84.0
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 5.5e-283 977.2 566 83.4
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 7.1e-283 976.9 592 80.6
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 7.1e-283 976.9 592 80.6
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 7.1e-283 976.9 564 84.2
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 9.3e-283 976.5 574 83.3
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 9.3e-283 976.5 562 83.8
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 9.3e-283 976.5 558 84.9
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 9.3e-283 976.5 558 84.9
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.2e-282 976.1 594 81.5
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.2e-282 976.1 603 79.9
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.2e-282 976.1 558 85.7
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.6e-282 975.7 589 81.0
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 3.5e-282 974.5 593 81.5
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 3.5e-282 974.5 558 84.6
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 4.6e-282 974.2 558 85.1
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 4.6e-282 974.2 558 84.6
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 4.6e-282 974.2 562 84.2
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 6.0e-282 973.8 566 83.2
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 7.9e-282 973.4 603 79.8
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 7.9e-282 973.4 594 80.6
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.3e-281 972.6 578 81.8
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.3e-281 971.8 577 82.3
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 3.9e-281 971.1 573 82.7
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 6.7e-281 970.3 565 82.8
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 8.7e-281 969.9 569 82.4
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.1e-280 969.5 566 82.9
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.9e-280 968.8 578 82.2
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 3.3e-280 968.0 562 83.1
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 7.4e-280 966.8 574 82.6
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 7.4e-280 966.8 598 80.1
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 9.7e-280 966.5 607 79.6
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 6.3e-279 963.8 558 83.7
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 6.3e-279 963.8 541 85.8
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 1.4e-278 962.6 601 79.7
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.4e-278 962.6 606 79.5
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 1.8e-278 962.2 613 78.5
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.1e-278 961.4 625 77.4
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.6e-277 958.4 597 79.2
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 7.7e-277 956.8 566 82.3
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.0e-276 956.4 632 75.8
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.9e-276 954.9 630 76.2
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 1.4e-275 952.6 562 82.4
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.9e-275 952.2 563 82.4
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.2e-275 951.0 566 82.0
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 4.2e-275 951.0 563 82.2
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 5.5e-275 950.7 563 82.2
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.6e-274 949.1 561 82.5
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.1e-274 948.7 581 81.4
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 2.7e-274 948.3 562 82.2
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 7.9e-274 946.8 600 78.7
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 5.1e-273 944.1 628 76.4
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.5e-272 942.6 587 79.7
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.5e-272 942.6 563 81.9
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.5e-272 942.6 563 81.9
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.5e-272 942.6 587 79.7
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.5e-272 942.6 563 81.7
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 4.3e-272 941.0 587 79.7
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 4.3e-272 941.0 597 78.7
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 4.3e-272 941.0 587 79.7
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 7.4e-272 940.3 588 79.4
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 7.4e-272 940.3 590 79.5
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.3e-271 939.5 588 79.4
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.3e-271 939.5 586 79.5
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.8e-271 938.3 568 81.5
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.4e-270 935.3 574 78.9
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 5.9e-269 930.6 557 81.0
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.0e-268 929.9 601 77.7
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.7e-268 929.1 566 78.8
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.1e-267 926.4 571 79.7
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.2e-266 922.9 672 71.4
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 6.1e-266 920.6 527 83.9
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 8.8e-265 916.8 549 80.5
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.0e-261 905.6 563 76.4
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 2.2e-260 902.1 563 76.9
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 2.2e-260 902.1 566 79.3
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 9.4e-259 896.7 550 81.1
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.7e-258 894.4 558 78.0
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.9e-257 891.3 527 82.2
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 3.1e-254 881.7 505 85.3
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.1e-250 869.0 539 79.4
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.0e-245 852.4 615 71.5
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 4.1e-238 828.2 597 70.7
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 6.6e-236 820.8 604 66.9
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.9e-235 819.3 606 70.3
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 3.4e-232 808.5 557 69.5
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.5e-227 793.1 490 79.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 8.3e-223 777.3 492 77.0
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.6e-218 763.1 490 78.6
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 1.1e-217 760.4 557 66.2
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.0e-216 756.1 433 85.0
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.3e-215 753.4 446 83.0
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.1e-213 746.1 490 77.3
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 8.1e-210 734.2 422 85.1
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-209 733.8 426 84.0
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 2.0e-208 729.6 433 81.8
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.1e-201 707.2 561 62.0
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.6e-186 656.8 403 80.1
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 6.2e-170 601.7 433 72.3
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.0e-169 597.8 596 52.2
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.1e-157 560.1 312 88.1
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.3e-147 526.2 470 62.3
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.8e-127 459.5 339 72.3
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 9.8e-115 418.3 229 86.5
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.6e-104 384.4 277 69.0
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 5.8e-91 339.3 215 76.3
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 4.6e-72 276.6 149 87.2
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.6e-72 276.6 164 82.9
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 6.0e-72 276.2 553 33.6
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.9e-66 256.5 150 82.0
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 4.6e-56 223.4 133 77.4
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 5.1e-55 219.9 131 80.9
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 7.4e-54 216.1 126 81.7
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 2.1e-53 214.5 117 92.3
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.6e-51 207.6 184 62.5
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 2.5e-49 201.1 109 87.2
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 3.1e-44 184.1 114 77.2
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.0e-42 179.1 115 74.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.7e-42 178.3 115 74.8
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-41 175.6 105 77.1
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.5e-41 173.3 140 62.9
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 5.5e-41 173.3 105 84.8
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 4.4e-38 163.7 90 81.1
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.2e-35 155.6 207 46.9
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.4e-31 142.1 126 61.1
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.4e-28 132.1 116 62.1
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.5e-25 122.1 61 93.4
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 5.2e-23 113.6 212 37.3
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.4e-20 104.8 56 89.3
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 7.7e-19 99.8 70 67.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.2e-14 85.9 183 30.6
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.0e-14 85.1 45 84.4
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 1.0e-10 72.8 85 51.8
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 1.1e-09 69.3 75 49.3


User provided reference genes

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