Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0393600 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 1.6e-58 229.2 116 100.0
Os01g0150800 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 4.8e-26 121.3 71 88.7
Os01g0150400 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 1.2e-19 100.1 66 75.8
Os01g0150500 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 5.7e-19 97.8 105 54.3
Os04g0271200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 2.7e-16 89.0 72 62.5
FAN26G2403 Fragaria x ananassa HOM05D004350 ORTHO05D005260 5.9e-16 87.8 72 59.7
HPP92_014310 Vanilla planifolia HOM05D004350 ORTHO05D005260 5.9e-16 87.8 72 59.7
FAN19G1284 Fragaria x ananassa HOM05D004350 ORTHO05D005260 7.7e-16 87.4 72 61.1
FAN23G0465 Fragaria x ananassa HOM05D004350 ORTHO05D005260 7.7e-16 87.4 72 61.1
Lalb_Chr05g0216341 Lupinus albus HOM05D004350 ORTHO05D005260 7.7e-16 87.4 72 58.3
Os01g0150200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 7.7e-16 87.4 72 61.1
Zm00001eb124340 Zea mays HOM05D004350 ORTHO05D005260 7.7e-16 87.4 72 61.1
CAN.G525.29 Capsicum annuum HOM05D004350 ORTHO05D005260 1.3e-15 86.7 72 61.1
Zm00001eb335910 Zea mays HOM05D004350 ORTHO05D005260 2.2e-15 85.9 88 51.1
arahy.Tifrunner.gnm1.ann1.4PU0PP Arachis hypogaea HOM05D004350 ORTHO05D005260 2.9e-15 85.5 72 58.3
arahy.Tifrunner.gnm1.ann1.Y3UPDN Arachis hypogaea HOM05D004350 ORTHO05D005260 2.9e-15 85.5 72 58.3
Cpa.g.sc55.29 Carica papaya HOM05D004350 ORTHO05D005260 2.9e-15 85.5 72 59.7
PSO017G6956 Papaver somniferum HOM05D004350 ORTHO05D005260 2.9e-15 85.5 72 58.3
PSO170G2632 Papaver somniferum HOM05D004350 ORTHO05D005260 2.9e-15 85.5 72 58.3
PSO170G6309 Papaver somniferum HOM05D004350 ORTHO05D005260 2.9e-15 85.5 72 58.3
TWI53G1737 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 5.0e-15 84.7 72 54.2
Solyc04g014370.4 Solanum lycopersicum HOM05D004350 ORTHO05D005260 6.5e-15 84.3 72 58.3
Gohir.A11G206700 Gossypium hirsutum HOM05D004350 ORTHO05D005260 8.5e-15 84.0 72 58.3
Gohir.D11G216900 Gossypium hirsutum HOM05D004350 ORTHO05D005260 8.5e-15 84.0 72 58.3
Gorai.007G233000 Gossypium raimondii HOM05D004350 ORTHO05D005260 8.5e-15 84.0 72 58.3
Oeu003728.1 Olea europaea HOM05D004350 ORTHO05D005260 1.1e-14 83.6 72 55.6
AL6G21000 Arabidopsis lyrata HOM05D004350 ORTHO05D005260 1.5e-14 83.2 72 58.3
AT5G10480 Arabidopsis thaliana HOM05D004350 ORTHO05D005260 1.5e-14 83.2 72 58.3
Lj4g0019109 Lotus japonicus HOM05D004350 ORTHO05D005260 1.5e-14 83.2 72 55.6
PGSC0003DMG400023576 Solanum tuberosum HOM05D004350 ORTHO05D005260 1.5e-14 83.2 72 58.3
Actinidia28826 Actinidia chinensis HOM05D004350 ORTHO05D005260 1.9e-14 82.8 72 55.6
Carub.0006s0896 Capsella rubella HOM05D004350 ORTHO05D005260 1.9e-14 82.8 72 58.3
FvH4_1g19690 Fragaria vesca HOM05D004350 ORTHO05D005260 1.9e-14 82.8 72 56.9
FAN19G0871 Fragaria x ananassa HOM05D004350 ORTHO05D005260 1.9e-14 82.8 72 56.9
Manes.13G099500 Manihot esculenta HOM05D004350 ORTHO05D005260 1.9e-14 82.8 72 56.9
Nitab4.5_0009469g0010 Nicotiana tabacum HOM05D004350 ORTHO05D005260 1.9e-14 82.8 72 58.3
Sopen04g006490 Solanum pennellii HOM05D004350 ORTHO05D005260 1.9e-14 82.8 72 58.3
CiPaw.08G140000 Carya illinoinensis HOM05D004350 ORTHO05D005260 2.5e-14 82.4 72 55.6
HanXRQChr14g0442921 Helianthus annuus HOM05D004350 ORTHO05D005260 2.5e-14 82.4 72 58.3
AUR62017968 Chenopodium quinoa HOM05D004350 ORTHO05D005260 3.2e-14 82.0 72 56.9
PSO541G1644 Papaver somniferum HOM05D004350 ORTHO05D005260 4.2e-14 81.6 72 54.2
Phvul.003G289100 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 4.2e-14 81.6 72 56.9
Hund16535 Selenicereus undatus HOM05D004350 ORTHO05D005260 4.2e-14 81.6 72 52.8
PGR031G0248 Punica granatum HOM05D004350 ORTHO05D005260 5.5e-14 81.3 72 55.6
Aqoxy5G01391 Aquilegia oxysepala HOM05D004350 ORTHO05D005260 7.2e-14 80.9 72 54.2
BcaB01g05531 Brassica carinata HOM05D004350 ORTHO05D005260 7.2e-14 80.9 72 55.6
Dinv36926 Davidia involucrata HOM05D004350 ORTHO05D005260 7.2e-14 80.9 72 55.6
Hma1.2p1_0433F.1_g152050 Hydrangea macrophylla HOM05D004350 ORTHO05D005260 7.2e-14 80.9 72 52.8
TAR381G0377 Trochodendron aralioides HOM05D004350 ORTHO05D005260 7.2e-14 80.9 72 55.6
BcaB01g06282 Brassica carinata HOM05D004350 ORTHO05D005260 1.2e-13 80.1 72 55.6
A03p04570 Brassica napus HOM05D004350 ORTHO05D005260 1.2e-13 80.1 72 55.6
CsaV3_3G006860 Cucumis sativus L. HOM05D004350 ORTHO05D005260 1.2e-13 80.1 72 55.6
Prupe.6G201300 Prunus persica HOM05D004350 ORTHO05D005260 1.2e-13 80.1 72 55.6
vmacro18559 Vaccinium macrocarpon HOM05D004350 ORTHO05D005260 1.2e-13 80.1 72 54.2
Aa31LG3G16680 Aethionema arabicum HOM05D004350 ORTHO05D005260 1.6e-13 79.7 72 55.6
Cfa006886 Carpinus fangiana HOM05D004350 ORTHO05D005260 2.1e-13 79.3 72 54.2
SalBow6G1994 Salvia bowleyana HOM05D004350 ORTHO05D005260 2.1e-13 79.3 72 51.4
THA.LOC104819292 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 2.1e-13 79.3 72 54.2
Atru.chr3.1251 Acer truncatum HOM05D004350 ORTHO05D005260 2.7e-13 79.0 72 54.2
CARHR202810 Cardamine hirsuta HOM05D004350 ORTHO05D005260 2.7e-13 79.0 67 58.2
AUR62003659 Chenopodium quinoa HOM05D004350 ORTHO05D005260 2.7e-13 79.0 72 54.2
Thhalv10014620m.g Eutrema salsugineum HOM05D004350 ORTHO05D005260 2.7e-13 79.0 72 55.6
Glyma.08G279700 Glycine max HOM05D004350 ORTHO05D005260 2.7e-13 79.0 72 54.2
TPR.G14596 Trifolium pratense HOM05D004350 ORTHO05D005260 2.7e-13 79.0 72 54.2
Eucgr.K02898 Eucalyptus grandis HOM05D004350 ORTHO05D005260 3.6e-13 78.6 73 56.2
Actinidia30847 Actinidia chinensis HOM05D004350 ORTHO05D005260 4.7e-13 78.2 72 52.8
Aa31LG5G22920 Aethionema arabicum HOM05D004350 ORTHO05D005260 4.7e-13 78.2 78 50.0
MD15G1312800 Malus domestica HOM05D004350 ORTHO05D005260 4.7e-13 78.2 72 54.2
Oeu055598.1 Olea europaea HOM05D004350 ORTHO05D005260 4.7e-13 78.2 72 52.8
CSS0009628 Camellia sinensis var. sinensis HOM05D004350 ORTHO05D005260 6.1e-13 77.8 72 52.8
CDE06G0701 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 6.1e-13 77.8 72 54.2
Cc07_g14130 Coffea canephora HOM05D004350 ORTHO05D005260 6.1e-13 77.8 72 52.8
THA.LOC104798725 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 6.1e-13 77.8 72 54.2
VMungo0251G2520 Vigna mungo HOM05D004350 ORTHO05D005260 6.1e-13 77.8 72 54.2
MD01G1038800 Malus domestica HOM05D004350 ORTHO05D005260 8.0e-13 77.4 72 54.2
BraA10t44761Z Brassica rapa HOM05D004350 ORTHO05D005260 1.0e-12 77.0 72 52.8
Nitab4.5_0001468g0120 Nicotiana tabacum HOM05D004350 ORTHO05D005260 1.0e-12 77.0 72 56.9
Sp6g32950 Schrenkiella parvula HOM05D004350 ORTHO05D005260 1.0e-12 77.0 67 58.2
Sc03g0000310 Simmondsia chinensis HOM05D004350 ORTHO05D005260 1.0e-12 77.0 72 51.4
BcaB08g37102 Brassica carinata HOM05D004350 ORTHO05D005260 1.4e-12 76.6 72 52.8
CDE04G1055 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 1.4e-12 76.6 72 52.8
Sed0019313 Sechium edule HOM05D004350 ORTHO05D005260 1.4e-12 76.6 72 54.2
MBI16_g27585_MAGBIO Magnolia biondii HOM05D004350 ORTHO05D005260 1.8e-12 76.3 66 59.1
A10p27090 Brassica napus HOM05D004350 ORTHO05D005260 2.3e-12 75.9 73 52.1
BolC9t59459H Brassica oleracea HOM05D004350 ORTHO05D005260 2.3e-12 75.9 72 52.8
Glyma.18G146900 Glycine max HOM05D004350 ORTHO05D005260 2.3e-12 75.9 72 51.4
Thecc.01G091200 Theobroma cacao HOM05D004350 ORTHO05D005260 2.3e-12 75.9 72 54.2
TWI74G1117 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 2.3e-12 75.9 67 52.2
CANSAT01G3290 Cannabis sativa HOM05D004350 ORTHO05D005260 3.0e-12 75.5 72 48.6
Duzib187G1704 Durio zibethinus HOM05D004350 ORTHO05D005260 3.0e-12 75.5 72 52.8
SGA_v2.0_scaffold32G13177 Striga asiatica HOM05D004350 ORTHO05D005260 3.0e-12 75.5 72 54.2
ECA238G4457 Erigeron canadensis HOM05D004350 ORTHO05D005260 4.0e-12 75.1 72 51.4
Potri.007G010900 Populus trichocarpa HOM05D004350 ORTHO05D005260 4.0e-12 75.1 72 52.8
ATR0767G219 Amborella trichopoda HOM05D004350 ORTHO05D005260 5.2e-12 74.7 75 49.3
C09p66790 Brassica napus HOM05D004350 ORTHO05D005260 5.2e-12 74.7 72 51.4
Duzib264G0362 Durio zibethinus HOM05D004350 ORTHO05D005260 5.2e-12 74.7 72 52.8
HanXRQChr11g0346981 Helianthus annuus HOM05D004350 ORTHO05D005260 5.2e-12 74.7 72 52.8
EL10Ac6g15209 Beta vulgaris HOM05D004350 ORTHO05D005260 6.8e-12 74.3 72 52.8
Nn5g29888 Nelumbo nucifera HOM05D004350 ORTHO05D005260 6.8e-12 74.3 72 54.2
GSVIVG01005931001 Vitis vinifera HOM05D004350 ORTHO05D005260 6.8e-12 74.3 67 52.2
SGA_v2.0_scaffold58G20514 Striga asiatica HOM05D004350 ORTHO05D005260 8.8e-12 73.9 72 54.2
MD04G1039300 Malus domestica HOM05D004350 ORTHO05D005260 1.5e-11 73.2 68 52.9
Nn1g05564 Nelumbo nucifera HOM05D004350 ORTHO05D005260 1.5e-11 73.2 72 51.4
Phvul.002G147400 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 2.0e-11 72.8 72 48.6
Ah.02g123600 Amaranthus hybridus HOM05D004350 ORTHO05D005260 3.4e-11 72.0 72 50.0
Medtr8g471160 Medicago truncatula HOM05D004350 ORTHO05D005260 3.4e-11 72.0 72 50.0
C03p05130 Brassica napus HOM05D004350 ORTHO05D005260 4.4e-11 71.6 82 48.8
RcHm_v2.0_Chr2g0111251 Rosa chinensis HOM05D004350 ORTHO05D005260 7.5e-11 70.9 73 52.1
Haze_03867 Corylus avellana HOM05D004350 ORTHO05D005260 9.8e-11 70.5 63 55.6
QL06p035732 Quercus lobata HOM05D004350 ORTHO05D005260 9.8e-11 70.5 63 54.0
TAR625G1314 Trochodendron aralioides HOM05D004350 ORTHO05D005260 9.8e-11 70.5 63 54.0
VMungo1215G0627 Vigna mungo HOM05D004350 ORTHO05D005260 9.8e-11 70.5 72 47.2
ClCG10G007720 Citrullus lanatus HOM05D004350 ORTHO05D005260 1.3e-10 70.1 62 56.5
Ca_22608_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 1.7e-10 69.7 72 51.4
AagrBONN_evm.TU.Sc2ySwM_228.1037 Anthoceros agrestis HOM05D004350 ORTHO05D005260 3.7e-10 68.6 67 49.3
FAN28G1749 Fragaria x ananassa HOM05D004350 ORTHO05D005260 3.7e-10 68.6 80 48.8
CiPaw.07G047800 Carya illinoinensis HOM05D004350 ORTHO05D005260 1.1e-09 67.0 66 48.5
MELO3C016419.2 Cucumis melo HOM05D004350 ORTHO05D005260 1.1e-09 67.0 96 41.7
unitig_0.g838 Utricularia gibba HOM05D004350 ORTHO05D005260 1.8e-09 66.2 67 44.8
PGSC0003DMG400016135 Solanum tuberosum HOM05D004350 ORTHO05D005260 5.4e-09 64.7 75 53.3
Lsat_1_v5_gn_3_62901 Lactuca sativa HOM05D004350 ORTHO05D005260 7.0e-09 64.3 64 45.3
Pp3c2_13410 Physcomitrium patens HOM05D004350 ORTHO05D005260 7.0e-09 64.3 65 50.8
Rhsim08G0016400 Rhododendron simsii HOM05D004350 ORTHO05D005260 9.1e-09 63.9 104 38.5
DCAR_014186 Daucus carota HOM05D004350 ORTHO05D005260 2.0e-08 62.8 56 53.6
Mapoly0034s0103 Marchantia polymorpha HOM05D004350 ORTHO05D005260 7.7e-08 60.8 70 50.0


User provided reference genes

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