Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 0.0e+00 1186.0 605 100.0
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 3.6e-213 745.3 475 80.4
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 3.2e-206 722.2 605 62.1
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 3.3e-203 712.2 604 62.7
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 6.1e-197 691.4 605 60.2
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.4e-196 690.3 606 59.2
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 7.5e-195 684.5 614 60.9
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.7e-194 683.3 607 61.3
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 6.3e-194 681.4 603 60.2
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.1e-193 679.1 605 61.0
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.2e-192 677.2 601 61.4
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.7e-192 676.0 603 59.0
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 1.0e-191 674.1 601 61.4
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.3e-191 673.7 607 59.0
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.3e-191 673.7 604 59.3
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.3e-191 673.7 604 59.6
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 9.4e-190 667.5 601 59.6
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 6.1e-189 664.8 609 58.0
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 2.6e-187 659.4 599 57.4
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 1.7e-186 656.8 598 57.9
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 4.8e-186 655.2 579 59.9
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.1e-185 654.1 598 57.7
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 2.4e-185 652.9 602 57.6
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.0e-183 647.5 603 58.0
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 6.5e-183 644.8 599 55.8
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 8.5e-183 644.4 599 57.3
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 3.2e-182 642.5 603 57.5
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 9.5e-182 641.0 625 55.7
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 3.6e-181 639.0 606 57.1
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 3.0e-180 636.0 606 57.3
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.0e-180 635.6 605 58.8
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 6.8e-180 634.8 611 56.5
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 5.7e-179 631.7 597 55.9
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 2.8e-178 629.4 606 56.6
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 5.4e-177 625.2 738 49.3
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 2.0e-176 623.2 602 55.6
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.3e-175 620.5 608 56.1
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 2.3e-175 619.8 599 56.8
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 5.0e-175 618.6 608 56.1
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 8.6e-175 617.8 608 55.9
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 1.5e-174 617.1 608 55.9
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 4.3e-174 615.5 603 57.7
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 7.3e-174 614.8 608 55.9
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 2.1e-173 613.2 560 59.1
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 4.7e-173 612.1 599 55.8
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.8e-172 610.1 599 54.6
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 3.0e-172 609.4 597 55.8
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 3.7e-170 602.4 577 56.8
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 1.4e-169 600.5 627 53.4
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 3.2e-169 599.4 597 56.8
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 4.1e-169 599.0 604 54.5
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 5.4e-169 598.6 599 53.9
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 7.0e-169 598.2 712 49.0
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.5e-168 595.9 603 53.1
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 7.8e-168 594.7 607 53.7
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.0e-167 594.3 598 53.5
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.7e-167 593.6 606 54.3
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.9e-166 590.1 607 54.2
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 2.5e-166 589.7 602 55.1
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 7.3e-166 588.2 606 52.1
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 3.6e-165 585.9 609 51.1
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 2.3e-164 583.2 602 52.8
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.1e-164 582.8 606 51.7
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 6.8e-164 581.6 607 51.6
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 8.9e-164 581.3 595 53.4
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 9.8e-163 577.8 597 51.9
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 9.8e-163 577.8 597 51.1
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 6.4e-162 575.1 600 51.7
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 1.9e-161 573.5 597 51.6
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 2.4e-161 573.2 620 52.9
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 5.4e-161 572.0 604 51.3
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 7.0e-161 571.6 597 51.4
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 1.2e-160 570.9 605 51.2
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.6e-160 570.5 597 51.6
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 6.0e-160 568.5 626 50.0
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 7.8e-160 568.2 590 51.4
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.7e-159 567.0 604 51.7
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.7e-159 567.0 699 47.2
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 2.3e-159 566.6 597 50.9
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 5.0e-159 565.5 597 50.8
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.6e-159 565.1 603 51.4
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.1e-158 564.3 601 50.2
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.9e-158 563.5 597 50.6
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.9e-158 563.5 597 50.6
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 2.5e-158 563.1 597 50.8
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 3.3e-158 562.8 610 51.6
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.3e-158 562.4 725 44.7
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.0e-155 553.5 595 50.6
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.1e-153 547.7 538 53.9
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 2.7e-152 543.1 666 47.1
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.3e-151 540.8 597 53.4
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 7.3e-150 535.0 618 50.2
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 9.5e-150 534.6 597 50.3
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 4.7e-149 532.3 556 52.3
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 6.2e-149 531.9 604 49.5
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 4.0e-148 529.3 598 48.0
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.5e-147 527.3 596 50.5
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 9.9e-147 524.6 537 51.8
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 7.1e-145 518.5 482 57.7
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 1.2e-144 517.7 614 48.4
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.7e-143 513.8 488 57.4
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 5.1e-143 512.3 612 48.2
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 7.3e-142 508.4 640 46.9
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.4e-140 503.4 595 47.6
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 3.4e-139 499.6 602 48.5
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.1e-137 494.6 454 59.3
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.9e-137 493.8 545 51.4
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.0e-135 486.5 367 69.8
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 9.6e-134 481.5 599 47.4
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 3.6e-133 479.6 467 55.9
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.0e-132 476.1 609 46.1
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.2e-131 474.6 431 58.0
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 4.5e-123 446.0 362 65.2
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 2.7e-120 436.8 411 57.7
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 3.5e-112 409.8 388 54.6
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 4.3e-110 402.9 417 53.2
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.8e-108 397.5 576 40.6
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 3.1e-108 396.7 479 49.7
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 7.7e-99 365.5 373 55.5
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 7.9e-96 355.5 599 38.9
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 5.1e-95 352.8 348 52.9
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 5.1e-95 352.8 476 45.4
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.1e-94 351.7 562 40.6
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 5.7e-94 349.4 373 51.2
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 8.5e-90 335.5 511 42.7
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.2e-88 331.6 434 47.0
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 9.7e-78 295.4 227 65.6
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.9e-75 286.2 473 39.5
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-70 271.6 440 39.3
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 4.5e-67 260.0 315 47.3
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 5.7e-62 243.0 210 61.4
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.6e-57 226.5 215 53.0
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.6e-56 223.8 229 52.4
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-56 223.0 225 52.4
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 2.3e-55 221.1 298 44.3
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.5e-54 218.4 340 42.9
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 7.5e-54 216.1 376 37.5
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.3e-53 215.3 240 49.2
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 1.4e-52 211.8 210 52.9
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 4.1e-52 210.3 471 36.3
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.1e-48 198.0 211 52.6
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.0e-47 193.7 206 49.5
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.3e-45 188.7 185 53.0
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.9e-45 186.8 285 43.9
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.9e-44 184.9 120 76.7
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 5.4e-44 183.3 181 59.1
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 7.0e-44 183.0 181 59.1
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 6.2e-40 169.9 215 45.1
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.0e-38 164.9 193 48.7
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.7e-37 161.8 165 47.9
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 9.2e-36 156.0 236 41.9
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.7e-34 151.8 230 41.3
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 2.7e-27 127.9 147 49.7
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 1.1e-25 122.5 739 23.7
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 1.4e-23 115.5 587 23.7
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 2.9e-21 107.8 165 40.0
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 8.4e-21 106.3 80 66.2
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.4e-20 105.5 190 35.3
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 5.4e-20 103.6 178 39.9
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.7e-18 98.6 65 70.8
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 2.3e-18 98.2 73 67.1
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 5.1e-18 97.1 77 63.6
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 2.5e-17 94.7 78 61.5
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 5.6e-17 93.6 81 58.0
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 9.6e-17 92.8 189 33.9
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 8.1e-16 89.7 122 36.1
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 6.9e-15 86.7 137 40.9
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 8.4e-13 79.7 58 65.5
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.6e-11 75.5 214 29.0
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 1.6e-11 75.5 104 40.4
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 3.5e-11 74.3 104 39.4
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 2.3e-10 71.6 152 35.5
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 5.1e-10 70.5 67 52.2
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 1.5e-09 68.9 56 60.7
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 1.9e-09 68.6 108 38.0
SEGI_40538 Sequoiadendron giganteum HOM05D003810 ORTHO05D004416 4.3e-09 67.4 53 62.3
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 5.6e-09 67.0 53 62.3
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.1e-07 62.8 198 31.3
Mapoly0063s0044 Marchantia polymorpha HOM05D003810 ORTHO05D004416 1.4e-07 62.4 90 44.4
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 5.3e-07 60.5 93 38.7
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 1.2e-06 59.3 159 32.7
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 2.6e-06 58.2 71 46.5
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 5.8e-06 57.0 74 40.5


User provided reference genes

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