Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os08g0226100 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D294725 6.5e-38 160.2 81 100.0
Os08g0226800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.9e-09 64.3 49 63.3
Os08g0226000 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.9e-08 62.4 51 58.8
Psat6g141440 Pisum sativum HOM05D000563 ORTHO05D000536 3.2e-08 61.6 54 51.9
Os08g0226400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.1e-08 61.2 51 56.9
Ca_08563_v3 Cicer arietinum L. HOM05D000563 ORTHO05D000536 5.4e-08 60.8 54 48.1
Ca_08597_v3 Cicer arietinum L. HOM05D000563 ORTHO05D000536 5.4e-08 60.8 54 48.1
Mapoly0051s0067 Marchantia polymorpha HOM05D000563 ORTHO05D000536 9.2e-08 60.1 46 56.5
Mapoly0051s0064 Marchantia polymorpha HOM05D000563 ORTHO05D000536 1.2e-07 59.7 50 48.0
SMO364G0489 Selaginella moellendorffii HOM05D000563 ORTHO05D000536 1.2e-07 59.7 54 48.1
VMungo0720G2654 Vigna mungo HOM05D000563 ORTHO05D000536 1.2e-07 59.7 47 53.2
Glyma.02G149600 Glycine max HOM05D000563 ORTHO05D000536 1.6e-07 59.3 47 53.2
Glyma.10G024300 Glycine max HOM05D000563 ORTHO05D000536 1.6e-07 59.3 47 53.2
TPR.G32825 Trifolium pratense HOM05D000563 ORTHO05D000536 1.6e-07 59.3 47 53.2
SMO116G0461 Selaginella moellendorffii HOM05D000563 ORTHO05D000536 2.1e-07 58.9 52 48.1
Lj5g0001400 Lotus japonicus HOM05D000563 ORTHO05D000536 3.5e-07 58.2 54 46.3
Lalb_Chr02g0142901 Lupinus albus HOM05D000563 ORTHO05D000536 3.5e-07 58.2 54 46.3
Pp3c12_280 Physcomitrium patens HOM05D000563 ORTHO05D000536 3.5e-07 58.2 46 54.3
Pp3c12_870 Physcomitrium patens HOM05D000563 ORTHO05D000536 3.5e-07 58.2 46 54.3
BcaC03g13823 Brassica carinata HOM05D000563 ORTHO05D000536 4.6e-07 57.8 58 46.6
BolC2t07091H Brassica oleracea HOM05D000563 ORTHO05D000536 4.6e-07 57.8 58 46.6
MSTRG.21578 Avicennia marina HOM05D000563 ORTHO05D000536 6.0e-07 57.4 57 45.6
AUR62012139 Chenopodium quinoa HOM05D000563 ORTHO05D000536 6.0e-07 57.4 60 50.0
Lalb_Chr21g0306581 Lupinus albus HOM05D000563 ORTHO05D000536 6.0e-07 57.4 54 46.3
Zm00001eb110590 Zea mays HOM05D000563 ORTHO05D000536 6.0e-07 57.4 46 58.7
Zm00001eb329510 Zea mays HOM05D000563 ORTHO05D000536 6.0e-07 57.4 46 58.7
BcaB01g04880 Brassica carinata HOM05D000563 ORTHO05D000536 7.8e-07 57.0 53 49.1
Glyma.19G153400 Glycine max HOM05D000563 ORTHO05D000536 7.8e-07 57.0 57 43.9
Pp3c17_930 Physcomitrium patens HOM05D000563 ORTHO05D000536 7.8e-07 57.0 46 54.3
Pp3c17_931 Physcomitrium patens HOM05D000563 ORTHO05D000536 7.8e-07 57.0 46 54.3
Glyma.03G150800 Glycine max HOM05D000563 ORTHO05D000536 1.0e-06 56.6 53 45.3
Lj1g0007647 Lotus japonicus HOM05D000563 ORTHO05D000536 1.0e-06 56.6 45 53.3
Os07g0655300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.0e-06 56.6 46 56.5
AUR62040696 Chenopodium quinoa HOM05D000563 ORTHO05D000536 1.3e-06 56.2 60 48.3
Lalb_Chr06g0163111 Lupinus albus HOM05D000563 ORTHO05D000536 1.3e-06 56.2 47 51.1
VMungo1383G0226 Vigna mungo HOM05D000563 ORTHO05D000536 1.3e-06 56.2 46 50.0
BNapus_Darmor_BZH_scaffold_38p01220 Brassica napus HOM05D000563 ORTHO05D000536 1.7e-06 55.8 57 45.6
C02p10570 Brassica napus HOM05D000563 ORTHO05D000536 1.7e-06 55.8 57 45.6
BraA02t05609Z Brassica rapa HOM05D000563 ORTHO05D000536 1.7e-06 55.8 57 45.6
Os04g0625400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.7e-06 55.8 52 46.2
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.7e-06 55.8 54 48.1
EL10Ac2g04698 Beta vulgaris HOM05D000563 ORTHO05D000536 2.3e-06 55.5 35 65.7
BcaC05g29798 Brassica carinata HOM05D000563 ORTHO05D000536 2.3e-06 55.5 51 49.0
Ca_06139_v3 Cicer arietinum L. HOM05D000563 ORTHO05D000536 2.3e-06 55.5 58 44.8
Eucgr.G02967 Eucalyptus grandis HOM05D000563 ORTHO05D000536 2.3e-06 55.5 47 53.2
Eucgr.J00615 Eucalyptus grandis HOM05D000563 ORTHO05D000536 2.3e-06 55.5 49 49.0
LjContig00564g0021617 Lotus japonicus HOM05D000563 ORTHO05D000536 2.3e-06 55.5 49 51.0
Rhsim01G0276800 Rhododendron simsii HOM05D000563 ORTHO05D000536 2.3e-06 55.5 51 49.0
Sc10g0001840 Simmondsia chinensis HOM05D000563 ORTHO05D000536 2.3e-06 55.5 47 51.1
Solyc01g009060.3 Solanum lycopersicum HOM05D000563 ORTHO05D000536 2.3e-06 55.5 58 48.3
COL.COLO4_25303 Corchorus olitorius HOM05D000563 ORTHO05D000536 3.0e-06 55.1 46 54.3
Haze_23635 Corylus avellana HOM05D000563 ORTHO05D000536 3.0e-06 55.1 46 54.3
Glyma.16G036400 Glycine max HOM05D000563 ORTHO05D000536 3.0e-06 55.1 49 53.1
Glyma.19G116300 Glycine max HOM05D000563 ORTHO05D000536 3.0e-06 55.1 49 53.1
Lsat_1_v5_gn_5_71120 Lactuca sativa HOM05D000563 ORTHO05D000536 3.0e-06 55.1 46 52.2
Oeu047884.2 Olea europaea HOM05D000563 ORTHO05D000536 3.0e-06 55.1 57 47.4
PSO384G4100 Papaver somniferum HOM05D000563 ORTHO05D000536 3.0e-06 55.1 55 41.8
Phvul.001G104500 Phaseolus vulgaris HOM05D000563 ORTHO05D000536 3.0e-06 55.1 49 53.1
PGR119G0667 Punica granatum HOM05D000563 ORTHO05D000536 3.0e-06 55.1 47 55.3
Sopen01g004550 Solanum pennellii HOM05D000563 ORTHO05D000536 3.0e-06 55.1 58 48.3
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 3.0e-06 55.1 44 52.3
HPP92_010624 Vanilla planifolia HOM05D000563 ORTHO05D000536 3.0e-06 55.1 51 51.0
VMungo1383G0126 Vigna mungo HOM05D000563 ORTHO05D000536 3.0e-06 55.1 49 53.1
VMungo1383G0948 Vigna mungo HOM05D000563 ORTHO05D000536 3.0e-06 55.1 51 49.0
Ah.10g037070 Amaranthus hybridus HOM05D000563 ORTHO05D000536 3.9e-06 54.7 53 50.9
C05p61020 Brassica napus HOM05D000563 ORTHO05D000536 3.9e-06 54.7 45 51.1
CSS0041659 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D000536 3.9e-06 54.7 61 45.9
CDE05G1176 Ceratophyllum demersum HOM05D000563 ORTHO05D000536 3.9e-06 54.7 52 46.2
CDE11G1213 Ceratophyllum demersum HOM05D000563 ORTHO05D000536 3.9e-06 54.7 52 46.2
Eucgr.K03404 Eucalyptus grandis HOM05D000563 ORTHO05D000536 3.9e-06 54.7 57 43.9
HanXRQChr01g0002431 Helianthus annuus HOM05D000563 ORTHO05D000536 3.9e-06 54.7 46 52.2
Medtr7g094490 Medicago truncatula HOM05D000563 ORTHO05D000536 3.9e-06 54.7 35 60.0
PSO339G0932 Papaver somniferum HOM05D000563 ORTHO05D000536 3.9e-06 54.7 55 41.8
SMO172G0179 Selaginella moellendorffii HOM05D000563 ORTHO05D000536 3.9e-06 54.7 49 49.0
PGSC0003DMG400022701 Solanum tuberosum HOM05D000563 ORTHO05D000536 3.9e-06 54.7 58 48.3
HPP92_010612 Vanilla planifolia HOM05D000563 ORTHO05D000536 3.9e-06 54.7 46 50.0
BraA05t22897Z Brassica rapa HOM05D000563 ORTHO05D000536 5.1e-06 54.3 51 49.0
Ca_09775_v3 Cicer arietinum L. HOM05D000563 ORTHO05D000536 5.1e-06 54.3 35 60.0
FAN27G0978 Fragaria x ananassa HOM05D000563 ORTHO05D000536 5.1e-06 54.3 53 45.3
Glyma.02G272800 Glycine max HOM05D000563 ORTHO05D000536 5.1e-06 54.3 46 52.2
Glyma.16G036700 Glycine max HOM05D000563 ORTHO05D000536 5.1e-06 54.3 35 62.9
Lalb_Chr17g0347431 Lupinus albus HOM05D000563 ORTHO05D000536 5.1e-06 54.3 46 52.2
MD03G1269700 Malus domestica HOM05D000563 ORTHO05D000536 5.1e-06 54.3 45 53.3
MD11G1290500 Malus domestica HOM05D000563 ORTHO05D000536 5.1e-06 54.3 45 53.3
Medtr1g072650 Medicago truncatula HOM05D000563 ORTHO05D000536 5.1e-06 54.3 35 60.0
Peaxi162Scf00164g01413 Petunia axillaris HOM05D000563 ORTHO05D000536 5.1e-06 54.3 46 50.0
Potri.008G200700 Populus trichocarpa HOM05D000563 ORTHO05D000536 5.1e-06 54.3 57 40.4
Sc05g0005070 Simmondsia chinensis HOM05D000563 ORTHO05D000536 5.1e-06 54.3 54 46.3
Zm00001eb060340 Zea mays HOM05D000563 ORTHO05D000536 5.1e-06 54.3 49 51.0
Atru.chr12.359 Acer truncatum HOM05D000563 ORTHO05D000536 6.6e-06 53.9 49 46.9
Atru.chr12.375 Acer truncatum HOM05D000563 ORTHO05D000536 6.6e-06 53.9 49 46.9
BcaC09g47757 Brassica carinata HOM05D000563 ORTHO05D000536 6.6e-06 53.9 47 51.1
A01p41380 Brassica napus HOM05D000563 ORTHO05D000536 6.6e-06 53.9 47 51.1
A10p20690 Brassica napus HOM05D000563 ORTHO05D000536 6.6e-06 53.9 51 51.0
BNapus_Darmor_BZH_scaffold_78p00330 Brassica napus HOM05D000563 ORTHO05D000536 6.6e-06 53.9 47 51.1
BolC1t05812H Brassica oleracea HOM05D000563 ORTHO05D000536 6.6e-06 53.9 47 51.1
BraA01t04562Z Brassica rapa HOM05D000563 ORTHO05D000536 6.6e-06 53.9 47 51.1
BraA10t44132Z Brassica rapa HOM05D000563 ORTHO05D000536 6.6e-06 53.9 51 51.0
FAN15G2043 Fragaria x ananassa HOM05D000563 ORTHO05D000536 6.6e-06 53.9 53 45.3
Gohir.D10G234900 Gossypium hirsutum HOM05D000563 ORTHO05D000536 6.6e-06 53.9 49 49.0
Gorai.011G268500 Gossypium raimondii HOM05D000563 ORTHO05D000536 6.6e-06 53.9 49 49.0
Os03g0792500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.6e-06 53.9 49 51.0
PSO782G1418 Papaver somniferum HOM05D000563 ORTHO05D000536 6.6e-06 53.9 34 67.6
QL06p005850 Quercus lobata HOM05D000563 ORTHO05D000536 6.6e-06 53.9 40 60.0
QL08p018679 Quercus lobata HOM05D000563 ORTHO05D000536 6.6e-06 53.9 40 60.0
SalBow6G0773 Salvia bowleyana HOM05D000563 ORTHO05D000536 6.6e-06 53.9 46 50.0
Sed0014760 Sechium edule HOM05D000563 ORTHO05D000536 6.6e-06 53.9 49 53.1
Solyc05g052960.4 Solanum lycopersicum HOM05D000563 ORTHO05D000536 6.6e-06 53.9 48 47.9
Sopen05g031480 Solanum pennellii HOM05D000563 ORTHO05D000536 6.6e-06 53.9 48 47.9
THA.LOC104802741 Tarenaya hassleriana HOM05D000563 ORTHO05D000536 6.6e-06 53.9 46 52.2
Zm00001eb213160 Zea mays HOM05D000563 ORTHO05D000536 6.6e-06 53.9 49 51.0
arahy.Tifrunner.gnm1.ann1.5RUK5M Arachis hypogaea HOM05D000563 ORTHO05D000536 8.6e-06 53.5 49 51.0
arahy.Tifrunner.gnm1.ann1.877CYK Arachis hypogaea HOM05D000563 ORTHO05D000536 8.6e-06 53.5 49 51.0
CARHR080710 Cardamine hirsuta HOM05D000563 ORTHO05D000536 8.6e-06 53.5 58 43.1
CARHR194000 Cardamine hirsuta HOM05D000563 ORTHO05D000536 8.6e-06 53.5 58 43.1
Cfa017708 Carpinus fangiana HOM05D000563 ORTHO05D000536 8.6e-06 53.5 46 54.3
CDE06G0183 Ceratophyllum demersum HOM05D000563 ORTHO05D000536 8.6e-06 53.5 46 52.2
Haze_20428 Corylus avellana HOM05D000563 ORTHO05D000536 8.6e-06 53.5 46 54.3
FAN20G2590 Fragaria x ananassa HOM05D000563 ORTHO05D000536 8.6e-06 53.5 47 48.9
FAN24G2483 Fragaria x ananassa HOM05D000563 ORTHO05D000536 8.6e-06 53.5 47 48.9
Lsat_1_v5_gn_3_113460 Lactuca sativa HOM05D000563 ORTHO05D000536 8.6e-06 53.5 47 51.1
MD14G1007300 Malus domestica HOM05D000563 ORTHO05D000536 8.6e-06 53.5 61 47.5
Oeu032065.1 Olea europaea HOM05D000563 ORTHO05D000536 8.6e-06 53.5 54 46.3
PGR142G3608 Punica granatum HOM05D000563 ORTHO05D000536 8.6e-06 53.5 46 50.0
Sed0006586 Sechium edule HOM05D000563 ORTHO05D000536 8.6e-06 53.5 49 51.0
vmacro04065 Vaccinium macrocarpon HOM05D000563 ORTHO05D000536 8.6e-06 53.5 52 48.1
GSVIVG01037518001 Vitis vinifera HOM05D000563 ORTHO05D000536 8.6e-06 53.5 49 51.0


User provided reference genes

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