Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0588600 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D000630 6.1e-78 294.7 221 100.0
Os07g0588700 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D000630 4.3e-23 112.5 172 59.3
Zm00001eb326170 Zea mays HOM05D000174 ORTHO05D000630 2.2e-19 100.1 177 44.6
Zm00001eb156960 Zea mays HOM05D000174 ORTHO05D000630 3.6e-14 82.8 211 44.1
Sc15g0005740 Simmondsia chinensis HOM05D000174 ORTHO05D000630 4.4e-12 75.9 186 46.2
Zm00001eb108210 Zea mays HOM05D000174 ORTHO05D000630 7.6e-12 75.1 162 36.4
Zm00001eb312310 Zea mays HOM05D000174 ORTHO05D000630 1.3e-11 74.3 158 46.8
Actinidia10189 Actinidia chinensis HOM05D000174 ORTHO05D000630 1.7e-11 73.9 165 45.5
SGA_v2.0_scaffold152G36793 Striga asiatica HOM05D000174 ORTHO05D000630 6.4e-11 72.0 168 47.0
Actinidia27987 Actinidia chinensis HOM05D000174 ORTHO05D000630 1.4e-10 70.9 137 46.0
unitig_0.g634 Utricularia gibba HOM05D000174 ORTHO05D000630 2.4e-10 70.1 159 43.4
SalBow7G2800 Salvia bowleyana HOM05D000174 ORTHO05D000630 5.4e-10 68.9 140 36.4
MSTRG.24369 Avicennia marina HOM05D000174 ORTHO05D000630 7.1e-10 68.6 189 34.4
Phvul.009G070800 Phaseolus vulgaris HOM05D000174 ORTHO05D000630 1.2e-09 67.8 177 31.6
Zm00001eb108200 Zea mays HOM05D000174 ORTHO05D000630 1.2e-09 67.8 76 51.3
Migut.B00436 Erythranthe guttata HOM05D000174 ORTHO05D000630 1.6e-09 67.4 158 32.9
unitig_578.g16143 Utricularia gibba HOM05D000174 ORTHO05D000630 1.6e-09 67.4 161 49.1
MD05G1098300 Malus domestica HOM05D000174 ORTHO05D000630 2.1e-09 67.0 180 32.2
Actinidia08251 Actinidia chinensis HOM05D000174 ORTHO05D000630 2.7e-09 66.6 146 34.9
BcaB02g09924 Brassica carinata HOM05D000174 ORTHO05D000630 3.5e-09 66.2 171 29.8
Oeu046749.1 Olea europaea HOM05D000174 ORTHO05D000630 4.6e-09 65.9 142 35.2
VMungo1309G1035 Vigna mungo HOM05D000174 ORTHO05D000630 4.6e-09 65.9 181 31.5
MSTRG.25041 Avicennia marina HOM05D000174 ORTHO05D000630 6.0e-09 65.5 145 35.2
BcaC04g23229 Brassica carinata HOM05D000174 ORTHO05D000630 1.0e-08 64.7 169 31.4
A02p44190 Brassica napus HOM05D000174 ORTHO05D000630 1.0e-08 64.7 169 31.4
BolC9t53982H Brassica oleracea HOM05D000174 ORTHO05D000630 1.0e-08 64.7 169 31.4
BraA02t09342Z Brassica rapa HOM05D000174 ORTHO05D000630 1.0e-08 64.7 169 31.4
unitig_60.g25462 Utricularia gibba HOM05D000174 ORTHO05D000630 1.0e-08 64.7 158 46.2
BcaC01g02874 Brassica carinata HOM05D000174 ORTHO05D000630 1.3e-08 64.3 169 29.6
A06p32940 Brassica napus HOM05D000174 ORTHO05D000630 1.3e-08 64.3 139 32.4
C09p10890 Brassica napus HOM05D000174 ORTHO05D000630 1.3e-08 64.3 169 31.4
BolC3t18214H Brassica oleracea HOM05D000174 ORTHO05D000630 1.3e-08 64.3 169 29.6
BraA06t26226Z Brassica rapa HOM05D000174 ORTHO05D000630 1.3e-08 64.3 139 32.4
Cc10_g05650 Coffea canephora HOM05D000174 ORTHO05D000630 1.3e-08 64.3 156 33.3
Peaxi162Scf00081g00151 Petunia axillaris HOM05D000174 ORTHO05D000630 1.3e-08 64.3 157 30.6
vmacro22062 Vaccinium macrocarpon HOM05D000174 ORTHO05D000630 1.3e-08 64.3 145 36.6
SGA_v2.0_scaffold14G07107 Striga asiatica HOM05D000174 ORTHO05D000630 1.7e-08 63.9 172 44.2
BcaC03g18372 Brassica carinata HOM05D000174 ORTHO05D000630 2.3e-08 63.5 167 32.3
Lalb_Chr23g0267461 Lupinus albus HOM05D000174 ORTHO05D000630 2.3e-08 63.5 186 29.6
Sp3g17620 Schrenkiella parvula HOM05D000174 ORTHO05D000630 2.3e-08 63.5 185 33.5
SGA_v2.0_scaffold225G43029 Striga asiatica HOM05D000174 ORTHO05D000630 2.3e-08 63.5 155 47.7
C07p17510 Brassica napus HOM05D000174 ORTHO05D000630 3.0e-08 63.2 169 32.5
BcaC01g03619 Brassica carinata HOM05D000174 ORTHO05D000630 3.9e-08 62.8 179 33.0
C02p64470 Brassica napus HOM05D000174 ORTHO05D000630 3.9e-08 62.8 167 32.3
BolC2t12511H Brassica oleracea HOM05D000174 ORTHO05D000630 3.9e-08 62.8 167 32.3
BraA09t36583Z Brassica rapa HOM05D000174 ORTHO05D000630 3.9e-08 62.8 170 30.6
Dinv44967 Davidia involucrata HOM05D000174 ORTHO05D000630 3.9e-08 62.8 173 41.0
Duzib116G0420 Durio zibethinus HOM05D000174 ORTHO05D000630 3.9e-08 62.8 161 32.3
Hma1.2p1_0819F.1_g223800 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 3.9e-08 62.8 177 29.4
AL5G29960 Arabidopsis lyrata HOM05D000174 ORTHO05D000630 5.1e-08 62.4 145 35.9
AT5G04340 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 5.1e-08 62.4 145 35.2
Cpa.g.sc249.7 Carica papaya HOM05D000174 ORTHO05D000630 5.1e-08 62.4 185 29.7
Thhalv10021307m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 5.1e-08 62.4 185 31.9
Sp2g29200 Schrenkiella parvula HOM05D000174 ORTHO05D000630 5.1e-08 62.4 175 30.9
TAR376G0798 Trochodendron aralioides HOM05D000174 ORTHO05D000630 5.1e-08 62.4 187 42.8
A05p30030 Brassica napus HOM05D000174 ORTHO05D000630 6.6e-08 62.0 176 31.8
A09p09300 Brassica napus HOM05D000174 ORTHO05D000630 6.6e-08 62.0 170 30.6
Actinidia34366 Actinidia chinensis HOM05D000174 ORTHO05D000630 8.6e-08 61.6 138 33.3
BraA05t21845Z Brassica rapa HOM05D000174 ORTHO05D000630 8.6e-08 61.6 178 32.0
CDE04G3623 Ceratophyllum demersum HOM05D000174 ORTHO05D000630 8.6e-08 61.6 141 47.5
ClCG08G016400 Citrullus lanatus HOM05D000174 ORTHO05D000630 8.6e-08 61.6 174 29.3
FvH4_2g04120 Fragaria vesca HOM05D000174 ORTHO05D000630 8.6e-08 61.6 76 44.7
FAN24G2008 Fragaria x ananassa HOM05D000174 ORTHO05D000630 8.6e-08 61.6 76 44.7
MBI16_g27829_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D000630 8.6e-08 61.6 145 33.8
BolC7t42259H Brassica oleracea HOM05D000174 ORTHO05D000630 1.1e-07 61.2 168 29.8
FAN20G2747 Fragaria x ananassa HOM05D000174 ORTHO05D000630 1.1e-07 61.2 106 52.8
Sc02g0007830 Simmondsia chinensis HOM05D000174 ORTHO05D000630 1.1e-07 61.2 116 37.9
ATR0019G031 Amborella trichopoda HOM05D000174 ORTHO05D000630 1.5e-07 60.8 144 45.8
BcaB03g13971 Brassica carinata HOM05D000174 ORTHO05D000630 1.5e-07 60.8 166 31.3
MD01G1041900 Malus domestica HOM05D000174 ORTHO05D000630 1.5e-07 60.8 178 29.2
Sed0025984 Sechium edule HOM05D000174 ORTHO05D000630 1.5e-07 60.8 174 31.0
AT5G67450 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 1.9e-07 60.5 171 29.8
BcaC05g28445 Brassica carinata HOM05D000174 ORTHO05D000630 1.9e-07 60.5 177 32.2
C05p45300 Brassica napus HOM05D000174 ORTHO05D000630 1.9e-07 60.5 177 32.2
BolC5t33253H Brassica oleracea HOM05D000174 ORTHO05D000630 1.9e-07 60.5 177 32.2
Gohir.D12G020300 Gossypium hirsutum HOM05D000174 ORTHO05D000630 1.9e-07 60.5 175 42.3
Manes.05G180900 Manihot esculenta HOM05D000174 ORTHO05D000630 1.9e-07 60.5 189 29.6
Prupe.8G142400 Prunus persica HOM05D000174 ORTHO05D000630 1.9e-07 60.5 113 35.4
BcaB04g20049 Brassica carinata HOM05D000174 ORTHO05D000630 2.5e-07 60.1 175 29.1
BcaB06g26027 Brassica carinata HOM05D000174 ORTHO05D000630 2.5e-07 60.1 183 31.1
Cfa013678 Carpinus fangiana HOM05D000174 ORTHO05D000630 2.5e-07 60.1 202 31.2
FAN15G2390 Fragaria x ananassa HOM05D000174 ORTHO05D000630 2.5e-07 60.1 200 29.0
Glyma.06G045400 Glycine max HOM05D000174 ORTHO05D000630 2.5e-07 60.1 172 41.9
Gohir.A12G020100 Gossypium hirsutum HOM05D000174 ORTHO05D000630 2.5e-07 60.1 85 43.5
Lj4C69T16 Lonicera japonica HOM05D000174 ORTHO05D000630 2.5e-07 60.1 133 45.9
Lj5g0014042 Lotus japonicus HOM05D000174 ORTHO05D000630 2.5e-07 60.1 125 34.4
Lalb_Chr08g0245511 Lupinus albus HOM05D000174 ORTHO05D000630 2.5e-07 60.1 170 30.6
Oeu037275.1 Olea europaea HOM05D000174 ORTHO05D000630 2.5e-07 60.1 160 31.9
Sp6g38390 Schrenkiella parvula HOM05D000174 ORTHO05D000630 2.5e-07 60.1 161 31.1
C03p50440 Brassica napus HOM05D000174 ORTHO05D000630 3.3e-07 59.7 153 33.3
C03p59530 Brassica napus HOM05D000174 ORTHO05D000630 3.3e-07 59.7 139 30.9
BolC3t17336H Brassica oleracea HOM05D000174 ORTHO05D000630 3.3e-07 59.7 153 33.3
BraA03t13284Z Brassica rapa HOM05D000174 ORTHO05D000630 3.3e-07 59.7 118 36.4
Thhalv10004839m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 3.3e-07 59.7 169 27.8
Gorai.008G020700 Gossypium raimondii HOM05D000174 ORTHO05D000630 3.3e-07 59.7 175 42.3
HanXRQChr10g0281541 Helianthus annuus HOM05D000174 ORTHO05D000630 3.3e-07 59.7 146 31.5
HanXRQChr16g0509251 Helianthus annuus HOM05D000174 ORTHO05D000630 3.3e-07 59.7 145 33.1
Hma1.2p1_1023F.1_g248850 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 3.3e-07 59.7 177 28.8
Hma1.2p1_1773F.1_g301705 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 3.3e-07 59.7 177 28.8
Nitab4.5_0000164g0180 Nicotiana tabacum HOM05D000174 ORTHO05D000630 3.3e-07 59.7 190 29.5
PGR031G0171 Punica granatum HOM05D000174 ORTHO05D000630 3.3e-07 59.7 191 30.9
CDE07G1592 Ceratophyllum demersum HOM05D000174 ORTHO05D000630 4.3e-07 59.3 60 51.7
Dinv42227 Davidia involucrata HOM05D000174 ORTHO05D000630 4.3e-07 59.3 151 33.8
MD03G1122300 Malus domestica HOM05D000174 ORTHO05D000630 4.3e-07 59.3 154 31.2
Aa31LG9G13260 Aethionema arabicum HOM05D000174 ORTHO05D000630 5.6e-07 58.9 160 42.5
TWI12G0308 Tripterygium wilfordii HOM05D000174 ORTHO05D000630 5.6e-07 58.9 178 41.6
Ah.05g167130 Amaranthus hybridus HOM05D000174 ORTHO05D000630 7.3e-07 58.5 193 30.1
A03p41300 Brassica napus HOM05D000174 ORTHO05D000630 7.3e-07 58.5 120 37.5
Ca_13230_v3 Cicer arietinum L. HOM05D000174 ORTHO05D000630 7.3e-07 58.5 167 32.9
Duzib093G2222 Durio zibethinus HOM05D000174 ORTHO05D000630 7.3e-07 58.5 152 30.9
Lsat_1_v5_gn_1_24181 Lactuca sativa HOM05D000174 ORTHO05D000630 7.3e-07 58.5 141 34.8
Lj5g0001700 Lotus japonicus HOM05D000174 ORTHO05D000630 7.3e-07 58.5 187 28.9
SGA_v2.0_scaffold28G11823 Striga asiatica HOM05D000174 ORTHO05D000630 7.3e-07 58.5 163 45.4
BcaB04g19050 Brassica carinata HOM05D000174 ORTHO05D000630 9.6e-07 58.2 144 34.7
Carub.0008s2702 Capsella rubella HOM05D000174 ORTHO05D000630 9.6e-07 58.2 176 27.8
COL.COLO4_32531 Corchorus olitorius HOM05D000174 ORTHO05D000630 9.6e-07 58.2 162 29.6
Haze_22320 Corylus avellana HOM05D000174 ORTHO05D000630 9.6e-07 58.2 194 28.4
MELO3C010813.2 Cucumis melo HOM05D000174 ORTHO05D000630 9.6e-07 58.2 178 40.4
Sc18g0003510 Simmondsia chinensis HOM05D000174 ORTHO05D000630 9.6e-07 58.2 152 43.4
THA.LOC104820510 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 9.6e-07 58.2 183 31.7
VMungo0647G1999 Vigna mungo HOM05D000174 ORTHO05D000630 9.6e-07 58.2 145 33.1
Zm00001eb214230 Zea mays HOM05D000174 ORTHO05D000630 9.6e-07 58.2 210 30.5
AT3G49930 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 1.2e-06 57.8 120 38.3
CARHR095030 Cardamine hirsuta HOM05D000174 ORTHO05D000630 1.2e-06 57.8 157 31.8
Lsat_1_v5_gn_7_85360 Lactuca sativa HOM05D000174 ORTHO05D000630 1.2e-06 57.8 116 36.2
Os03g0764100 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D000630 1.2e-06 57.8 137 33.6
unitig_21.g20721 Utricularia gibba HOM05D000174 ORTHO05D000630 1.2e-06 57.8 122 47.5
Zm00001eb030190 Zea mays HOM05D000174 ORTHO05D000630 1.2e-06 57.8 56 55.4
DCAR_001685 Daucus carota HOM05D000174 ORTHO05D000630 1.6e-06 57.4 182 30.2
Duzib052G1103 Durio zibethinus HOM05D000174 ORTHO05D000630 1.6e-06 57.4 137 32.1
ECA247G0119 Erigeron canadensis HOM05D000174 ORTHO05D000630 1.6e-06 57.4 187 32.1
Oeu037501.1 Olea europaea HOM05D000174 ORTHO05D000630 1.6e-06 57.4 145 31.0
PGR083G0574 Punica granatum HOM05D000174 ORTHO05D000630 1.6e-06 57.4 143 32.2
Carub.0001s3911 Capsella rubella HOM05D000174 ORTHO05D021405 2.1e-06 57.0 77 68.8
Duzib248G0854 Durio zibethinus HOM05D000174 ORTHO05D000630 2.1e-06 57.0 154 31.8
HanXRQChr03g0075431 Helianthus annuus HOM05D000174 ORTHO05D000630 2.1e-06 57.0 137 35.0
Thecc.02G115400 Theobroma cacao HOM05D000174 ORTHO05D000630 2.1e-06 57.0 162 29.0
TAR628G1092 Trochodendron aralioides HOM05D000174 ORTHO05D000630 2.1e-06 57.0 180 28.3
CSS0001087 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D000630 2.8e-06 56.6 137 46.7
Dinv39233 Davidia involucrata HOM05D000174 ORTHO05D000630 2.8e-06 56.6 139 49.6
Eucgr.A01230 Eucalyptus grandis HOM05D000174 ORTHO05D000795 2.8e-06 56.6 79 39.2
FAN15G0056 Fragaria x ananassa HOM05D000174 ORTHO05D000630 2.8e-06 56.6 76 43.4
Gohir.A02G081300 Gossypium hirsutum HOM05D000174 ORTHO05D000630 2.8e-06 56.6 174 29.9
Gorai.009G218900 Gossypium raimondii HOM05D000174 ORTHO05D000630 2.8e-06 56.6 158 32.3
Peaxi162Scf00039g00233 Petunia axillaris HOM05D000174 ORTHO05D000630 2.8e-06 56.6 142 29.6
Prupe.1G424300 Prunus persica HOM05D000174 ORTHO05D000630 2.8e-06 56.6 165 29.7
A01p35100 Brassica napus HOM05D000174 ORTHO05D000630 3.6e-06 56.2 120 36.7
Ciclev10002297m.g Citrus clementina HOM05D000174 ORTHO05D000630 3.6e-06 56.2 145 32.4
FAN27G0460 Fragaria x ananassa HOM05D000174 ORTHO05D000630 3.6e-06 56.2 204 29.4
Gohir.A06G023600 Gossypium hirsutum HOM05D000174 ORTHO05D000630 3.6e-06 56.2 180 27.8
Os03g0437200 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D000630 3.6e-06 56.2 38 63.2
Os03g0610400 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D000630 3.6e-06 56.2 59 54.2
Sabra14G0011100 Salix brachista HOM05D000174 ORTHO05D000630 3.6e-06 56.2 186 29.6
unitig_744.g24215 Utricularia gibba HOM05D000174 ORTHO05D000630 3.6e-06 56.2 140 47.9
AT3G19580 Arabidopsis thaliana HOM05D000174 ORTHO05D000630 4.7e-06 55.8 187 29.4
ECA236G3102 Erigeron canadensis HOM05D000174 ORTHO05D000630 4.7e-06 55.8 140 32.1
Gohir.A05G209000 Gossypium hirsutum HOM05D000174 ORTHO05D000630 4.7e-06 55.8 156 32.7
Gohir.D05G212200 Gossypium hirsutum HOM05D000174 ORTHO05D000630 4.7e-06 55.8 155 32.9
Gohir.D06G020700 Gossypium hirsutum HOM05D000174 ORTHO05D000630 4.7e-06 55.8 180 27.8
Nitab4.5_0000569g0020 Nicotiana tabacum HOM05D000174 ORTHO05D000630 4.7e-06 55.8 176 27.8
Nitab4.5_0001445g0010 Nicotiana tabacum HOM05D000174 ORTHO05D000630 4.7e-06 55.8 119 30.3
Oeu050872.1 Olea europaea HOM05D000174 ORTHO05D000630 4.7e-06 55.8 151 33.1
Oeu059078.1 Olea europaea HOM05D000174 ORTHO05D000630 4.7e-06 55.8 158 31.0
TPR.G3766 Trifolium pratense HOM05D000174 ORTHO05D000630 4.7e-06 55.8 175 29.7
HPP92_014150 Vanilla planifolia HOM05D000174 ORTHO05D000630 4.7e-06 55.8 181 38.7
VMungo0720G1076 Vigna mungo HOM05D000174 ORTHO05D000630 4.7e-06 55.8 152 30.3
MSTRG.27759 Avicennia marina HOM05D000174 ORTHO05D000630 6.2e-06 55.5 122 33.6
BraA01t03592Z Brassica rapa HOM05D000174 ORTHO05D000630 6.2e-06 55.5 148 34.5
CANSAT25G0483 Cannabis sativa HOM05D000174 ORTHO05D000630 6.2e-06 55.5 198 28.8
CAN.G724.9 Capsicum annuum HOM05D000174 ORTHO05D000630 6.2e-06 55.5 151 30.5
Gorai.008G082500 Gossypium raimondii HOM05D000174 ORTHO05D000630 6.2e-06 55.5 150 32.0
Gorai.010G025200 Gossypium raimondii HOM05D000174 ORTHO05D000630 6.2e-06 55.5 180 27.8
HanXRQChr04g0128601 Helianthus annuus HOM05D000174 ORTHO05D000630 6.2e-06 55.5 137 45.3
HPP92_018751 Vanilla planifolia HOM05D000174 ORTHO05D000630 6.2e-06 55.5 130 33.8
CDE04G0568 Ceratophyllum demersum HOM05D000174 ORTHO05D000630 8.1e-06 55.1 176 39.2
Duzib147G0978 Durio zibethinus HOM05D000174 ORTHO05D000630 8.1e-06 55.1 180 30.0
Lj5P218T69 Lonicera japonica HOM05D000174 ORTHO05D000630 8.1e-06 55.1 170 29.4
Nitab4.5_0005385g0020 Nicotiana tabacum HOM05D000174 ORTHO05D000630 8.1e-06 55.1 189 28.0
Oeu019225.1 Olea europaea HOM05D000174 ORTHO05D000630 8.1e-06 55.1 111 30.6
Sc14g0002870 Simmondsia chinensis HOM05D000174 ORTHO05D000630 8.1e-06 55.1 199 35.7
THA.LOC104807072 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 8.1e-06 55.1 171 29.2


User provided reference genes

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