Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 0.0e+00 1332.0 692 100.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 2.9e-288 995.0 696 75.9
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 4.6e-281 971.1 695 75.1
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.8e-168 597.0 712 48.7
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.3e-168 596.7 692 51.3
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.2e-151 541.2 710 45.9
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 8.4e-150 535.0 711 46.4
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.8e-144 517.3 712 45.1
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.2e-142 510.4 709 44.0
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 6.0e-140 502.3 719 43.3
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 4.8e-137 492.7 671 44.4
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 4.5e-135 486.1 769 39.0
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 9.3e-133 478.4 711 43.0
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 7.4e-130 468.8 700 41.6
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 6.2e-129 465.7 711 42.3
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.4e-128 464.5 709 43.2
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 5.3e-128 462.6 710 41.4
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.4e-127 459.9 764 39.9
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.9e-126 456.8 708 41.9
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.1e-125 454.9 710 42.8
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.9e-123 446.4 713 41.2
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.1e-122 444.9 714 40.2
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.1e-122 444.9 704 42.2
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 5.6e-122 442.6 705 40.0
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 3.7e-121 439.9 707 38.8
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 8.1e-121 438.7 708 41.4
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.1e-120 438.3 709 39.1
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-120 438.3 710 41.3
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.4e-120 438.0 713 41.4
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.4e-120 438.0 704 41.3
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 2.6e-119 433.7 711 40.8
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.6e-119 433.7 709 39.4
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 5.8e-119 432.6 709 39.2
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 7.6e-119 432.2 710 38.2
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.0e-118 431.8 712 42.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.7e-118 431.0 712 40.2
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.8e-118 429.9 713 41.4
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 4.9e-118 429.5 722 37.8
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 4.9e-118 429.5 698 41.4
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 6.5e-118 429.1 714 39.2
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 8.4e-118 428.7 708 41.5
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.9e-117 427.6 713 40.1
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.2e-117 426.8 703 41.1
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 4.2e-117 426.4 696 42.7
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 7.1e-117 425.6 707 41.2
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 9.3e-117 425.2 704 41.6
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 9.3e-117 425.2 710 40.3
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.2e-116 424.9 701 39.2
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.6e-116 424.5 706 41.1
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.1e-116 424.1 698 40.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.1e-116 424.1 709 41.0
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.7e-116 423.7 710 38.0
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 4.6e-116 422.9 641 44.0
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 6.0e-116 422.5 706 40.5
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 7.9e-116 422.2 681 44.1
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.3e-115 421.4 707 41.6
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.8e-115 421.0 715 38.9
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 2.3e-115 420.6 707 41.3
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 5.1e-115 419.5 708 40.4
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 8.7e-115 418.7 706 40.2
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-114 418.3 705 40.4
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.5e-114 417.9 704 41.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.5e-114 417.9 709 40.8
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.9e-114 417.5 705 40.4
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.9e-114 417.5 707 39.3
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.5e-114 417.2 704 41.5
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.3e-114 416.8 710 37.5
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 3.3e-114 416.8 706 40.5
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 7.4e-114 415.6 702 40.0
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 9.6e-114 415.2 708 39.7
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 9.6e-114 415.2 708 38.7
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.3e-113 414.8 705 40.6
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.6e-113 414.5 737 37.6
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 6.3e-113 412.5 705 40.6
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 8.2e-113 412.1 705 40.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.8e-112 411.0 697 40.2
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.8e-112 411.0 712 40.0
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.4e-112 410.6 714 39.9
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.4e-112 410.6 721 37.0
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 3.1e-112 410.2 712 38.8
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 9.0e-112 408.7 705 40.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 9.0e-112 408.7 708 39.4
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.2e-111 408.3 739 38.0
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.0e-111 407.5 701 39.9
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.0e-111 407.5 708 39.4
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 5.9e-111 406.0 706 37.0
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 7.6e-111 405.6 724 39.1
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.1e-109 401.7 712 39.3
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 9.3e-109 398.7 699 39.9
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.1e-108 396.0 714 37.7
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.3e-107 394.8 700 40.0
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.3e-107 394.0 743 35.3
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.5e-106 390.6 702 37.9
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 5.7e-106 389.4 705 38.9
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.6e-105 387.9 721 39.0
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.2e-105 385.6 721 39.5
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.4e-104 384.8 708 37.0
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.1e-104 383.6 709 38.6
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 3.1e-104 383.6 636 40.6
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 5.3e-104 382.9 705 38.7
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 2.0e-103 380.9 630 41.9
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.6e-103 380.6 703 38.7
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 2.2e-102 377.5 670 37.5
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.1e-101 375.2 699 35.5
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.1e-100 370.9 710 36.1
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.8e-96 357.8 635 40.9
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.5e-95 354.8 694 39.8
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.3e-94 351.7 574 39.9
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.4e-88 331.6 535 39.3
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.8e-88 331.3 708 34.6
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.7e-86 324.7 633 37.6
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-83 313.2 529 42.0
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.7e-81 307.0 520 38.8
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-76 292.0 520 37.9
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.7e-76 290.0 528 37.7
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 3.0e-75 287.3 467 40.3
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 6.8e-75 286.2 718 32.5
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 4.1e-72 276.9 521 36.3
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 2.3e-70 271.2 459 35.7
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-65 254.2 476 37.2
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.1e-64 252.3 532 37.6
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-59 235.3 484 35.3
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 3.2e-56 224.2 559 31.8
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-55 221.9 431 36.2
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 5.0e-54 216.9 413 33.7
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 7.3e-53 213.0 255 49.0
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.5e-50 205.3 294 46.6
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 7.5e-50 203.0 278 42.4
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.3e-49 202.2 401 36.9
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 1.9e-48 198.4 716 28.2
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 7.8e-47 193.0 353 35.7
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.0e-46 192.6 549 32.6
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 8.6e-38 162.9 165 50.9
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.7e-36 157.1 255 45.9
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.7e-33 148.7 140 55.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.2e-33 148.3 530 31.9
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 1.9e-32 145.2 258 39.9
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 6.0e-31 140.2 193 44.0
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 5.6e-29 133.7 194 53.1
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 9.0e-27 126.3 291 30.9
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.7e-25 122.1 190 43.2
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-24 119.4 161 42.9
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 5.1e-22 110.5 137 59.1
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 5.1e-22 110.5 104 55.8
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.5e-21 109.0 137 57.7
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 4.3e-21 107.5 117 49.6
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 9.0e-19 99.8 138 41.3
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.6e-18 98.2 122 41.8
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.5e-18 97.4 90 53.3
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.5e-18 97.4 90 53.3
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.2e-16 91.3 98 50.0
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 4.2e-16 90.9 71 57.7
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 9.3e-16 89.7 87 50.6
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 3.5e-15 87.8 135 39.3
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.6e-15 87.4 93 51.6
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 3.0e-14 84.7 118 44.9
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.5e-13 82.4 100 46.0
Cfa025520 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.1e-12 78.6 208 26.0
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 3.7e-12 77.8 113 41.6
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.8e-11 75.5 73 50.7
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 5.3e-11 73.9 74 51.4
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 3.4e-10 71.2 159 32.7
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 9.9e-10 69.7 261 25.7
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-07 62.4 95 35.8
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-07 61.6 100 35.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-07 61.6 100 35.0
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.0e-06 59.7 127 31.5
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 1.3e-06 59.3 137 25.5
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-06 58.2 100 35.0
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.7e-06 56.6 100 34.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.7e-06 56.6 100 34.0
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 8.7e-06 56.6 53 49.1


User provided reference genes

Program Settings