Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.6e-135 486.1 255 100.0
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 6.5e-100 367.9 245 80.4
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.5e-99 364.8 220 85.9
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 5.5e-99 364.8 218 85.3
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 9.4e-99 364.0 230 82.6
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 9.4e-99 364.0 220 85.5
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.2e-98 363.6 220 85.5
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 4.7e-98 361.7 240 80.0
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 4.7e-98 361.7 234 80.3
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 6.1e-98 361.3 234 80.8
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.0e-97 360.5 215 84.2
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.0e-97 360.5 234 80.8
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.8e-97 359.8 215 86.0
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.3e-97 359.4 219 84.0
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.0e-97 359.0 215 85.1
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 5.2e-97 358.2 220 83.6
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 5.2e-97 358.2 215 84.7
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 6.7e-97 357.8 221 84.6
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 8.8e-97 357.5 215 85.6
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 8.8e-97 357.5 231 81.0
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.1e-96 357.1 221 83.7
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 1.1e-96 357.1 215 85.6
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 3.3e-96 355.5 219 83.1
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 5.7e-96 354.8 270 72.2
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 5.7e-96 354.8 221 83.3
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 5.7e-96 354.8 221 83.3
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 5.7e-96 354.8 216 86.6
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 7.4e-96 354.4 221 83.3
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 9.7e-96 354.0 216 83.3
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 9.7e-96 354.0 215 84.2
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.3e-95 353.6 218 84.9
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.3e-95 353.6 233 79.8
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.3e-95 353.6 237 77.6
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.3e-95 353.6 219 83.6
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.3e-95 353.6 217 83.9
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.7e-95 353.2 230 80.9
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.7e-95 353.2 218 83.0
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 1.7e-95 353.2 275 69.1
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.7e-95 353.2 220 83.2
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 2.2e-95 352.8 234 80.8
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 2.2e-95 352.8 230 80.9
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 2.2e-95 352.8 230 80.9
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 2.2e-95 352.8 230 80.9
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 2.2e-95 352.8 230 80.9
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 2.2e-95 352.8 230 80.4
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.2e-95 352.8 217 84.3
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 2.8e-95 352.4 221 82.8
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 3.7e-95 352.1 230 80.9
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 3.7e-95 352.1 217 83.4
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 3.7e-95 352.1 239 78.2
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 3.7e-95 352.1 218 83.0
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 4.8e-95 351.7 222 82.4
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 4.8e-95 351.7 221 82.4
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.8e-95 351.7 223 82.1
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.8e-95 351.7 223 82.1
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 4.8e-95 351.7 223 82.1
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 4.8e-95 351.7 217 83.4
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 4.8e-95 351.7 219 83.1
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 4.8e-95 351.7 232 79.7
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 6.3e-95 351.3 230 80.4
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 6.3e-95 351.3 215 84.7
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.3e-95 351.3 216 83.3
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 6.3e-95 351.3 219 82.6
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 6.3e-95 351.3 219 82.6
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 6.3e-95 351.3 216 84.3
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 6.3e-95 351.3 221 81.9
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 8.2e-95 350.9 230 80.4
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 8.2e-95 350.9 216 82.9
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 8.2e-95 350.9 217 85.3
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.1e-94 350.5 221 81.4
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.1e-94 350.5 221 81.4
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.1e-94 350.5 217 84.3
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 1.4e-94 350.1 234 79.5
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-94 350.1 230 80.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.4e-94 350.1 230 80.4
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.4e-94 350.1 216 82.9
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.8e-94 349.7 234 76.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.8e-94 349.7 212 85.8
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.8e-94 349.7 219 82.6
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 2.4e-94 349.4 236 79.2
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 2.4e-94 349.4 234 79.5
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 2.4e-94 349.4 214 84.6
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 3.1e-94 349.0 215 81.9
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 4.1e-94 348.6 234 79.5
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 4.1e-94 348.6 234 79.5
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 4.1e-94 348.6 234 79.5
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 4.1e-94 348.6 219 83.1
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 4.1e-94 348.6 218 81.2
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.1e-94 348.6 217 82.9
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.3e-94 348.2 217 82.5
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 5.3e-94 348.2 232 78.9
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 7.0e-94 347.8 215 82.8
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 9.1e-94 347.4 229 79.0
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.1e-94 347.4 217 82.5
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.2e-93 347.1 215 83.3
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 1.2e-93 347.1 234 78.6
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 1.6e-93 346.7 218 83.5
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.6e-93 346.7 214 84.1
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 2.6e-93 345.9 218 81.7
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 3.5e-93 345.5 219 82.2
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 3.5e-93 345.5 200 87.5
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.0e-92 344.0 198 88.4
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 5.0e-92 341.7 215 82.3
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 5.0e-92 341.7 215 83.3
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 5.0e-92 341.7 194 88.7
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 5.0e-92 341.7 241 75.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 6.5e-92 341.3 215 82.8
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 6.5e-92 341.3 217 81.6
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 2.5e-91 339.3 219 81.7
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 4.2e-91 338.6 219 82.2
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 7.2e-91 337.8 242 75.2
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 9.4e-91 337.4 265 69.4
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.6e-90 336.7 193 87.0
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 2.1e-90 336.3 223 78.0
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 2.7e-90 335.9 239 73.6
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 2.3e-89 332.8 215 82.8
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 8.8e-89 330.9 215 80.5
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 2.0e-85 319.7 220 74.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 4.5e-85 318.5 256 66.4
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 3.8e-84 315.5 197 79.2
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.7e-79 300.1 214 71.5
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.6e-74 282.3 169 84.6
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.5e-72 276.9 220 70.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.7e-63 246.9 160 76.2
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 2.2e-63 246.5 162 79.6
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.6e-61 240.4 134 92.5
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.2e-56 224.2 163 69.9
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 2.3e-52 209.9 141 80.9
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 7.3e-51 204.9 136 80.9
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.2e-50 204.1 140 77.1
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.6e-45 187.2 160 65.0
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 8.9e-41 171.4 125 72.8
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 7.8e-37 158.3 96 83.3
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 6.6e-36 155.2 97 83.5
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.9e-35 153.7 226 45.1
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.9e-35 153.7 226 45.1
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 4.0e-33 146.0 184 53.8
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.7e-21 106.7 80 75.0
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 5.7e-11 72.4 58 72.4
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 5.7e-11 72.4 191 30.4
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 6.3e-10 68.9 140 34.3
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.9e-07 60.1 60 51.7
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 6.5e-07 58.9 40 72.5
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.2e-06 56.6 80 46.2


User provided reference genes

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