Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 8.5e-165 583.6 287 100.0
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 3.1e-106 389.0 289 70.2
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 2.2e-72 276.6 308 48.7
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 2.5e-71 273.1 313 49.2
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 2.1e-70 270.0 297 48.1
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 2.7e-70 269.6 314 47.5
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.8e-69 266.9 279 49.1
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 5.1e-69 265.4 308 48.7
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 4.3e-68 262.3 279 48.0
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 4.3e-68 262.3 327 45.9
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 4.3e-68 262.3 299 48.2
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 5.7e-68 261.9 293 48.1
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 7.4e-68 261.5 308 46.4
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 7.4e-68 261.5 289 48.1
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.3e-67 260.8 279 48.0
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.6e-67 260.4 299 46.8
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 2.2e-67 260.0 301 46.8
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.8e-67 259.6 308 48.1
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 3.7e-67 259.2 315 46.7
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.7e-67 259.2 302 48.0
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.4e-66 257.3 314 45.9
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.4e-66 257.3 314 47.8
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.4e-66 257.3 348 43.1
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.8e-66 256.9 318 45.9
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 1.8e-66 256.9 296 47.6
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.4e-66 256.5 327 46.2
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.4e-66 256.5 306 45.8
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 2.4e-66 256.5 329 44.7
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 3.1e-66 256.1 331 45.3
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.1e-66 255.8 310 47.4
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 4.1e-66 255.8 317 48.9
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.9e-66 255.0 295 47.5
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.5e-65 253.8 332 45.5
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.5e-65 253.8 322 45.7
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.9e-65 251.9 305 46.6
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 5.9e-65 251.9 299 46.8
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 5.9e-65 251.9 317 46.1
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 5.9e-65 251.9 321 46.4
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.3e-64 250.8 295 45.4
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 1.7e-64 250.4 335 44.8
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.7e-64 250.4 314 44.9
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 2.2e-64 250.0 302 49.0
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 2.2e-64 250.0 310 45.8
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 2.2e-64 250.0 295 44.4
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 2.9e-64 249.6 309 46.0
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 5.0e-64 248.8 302 45.7
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 6.5e-64 248.4 314 45.2
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.5e-64 248.4 305 46.2
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.1e-63 247.7 306 45.4
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.1e-63 247.7 302 48.7
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 1.1e-63 247.7 317 42.9
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.4e-63 247.3 316 44.0
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 1.9e-63 246.9 308 45.1
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 2.5e-63 246.5 313 45.4
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 2.5e-63 246.5 308 45.5
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 2.5e-63 246.5 301 47.2
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 3.2e-63 246.1 311 46.9
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 4.2e-63 245.7 308 45.5
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 4.2e-63 245.7 301 45.2
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 4.2e-63 245.7 320 43.4
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 5.5e-63 245.4 305 44.3
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 5.5e-63 245.4 336 43.8
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 7.2e-63 245.0 317 43.8
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.2e-62 244.2 314 45.2
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.2e-62 244.2 328 44.5
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.2e-62 244.2 314 45.5
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.2e-62 244.2 318 44.7
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 1.6e-62 243.8 348 42.0
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.7e-62 243.0 335 43.6
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 3.6e-62 242.7 335 43.0
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 4.6e-62 242.3 321 46.1
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 7.9e-62 241.5 312 44.6
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.0e-61 241.1 281 47.0
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.8e-61 240.4 293 43.3
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 1.8e-61 240.4 333 44.4
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 3.9e-61 239.2 288 45.8
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 5.1e-61 238.8 331 44.1
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 6.7e-61 238.4 326 42.3
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.1e-60 237.7 317 44.2
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 2.5e-60 236.5 306 43.5
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 5.7e-60 235.3 317 44.2
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.3e-59 234.2 342 40.9
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.8e-59 233.0 334 42.8
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.8e-58 230.3 315 42.2
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 9.1e-58 228.0 332 41.3
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 9.1e-58 228.0 329 41.0
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.4e-55 218.0 302 42.7
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 2.1e-54 216.9 147 72.1
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.0e-53 214.5 319 42.6
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 9.7e-52 208.0 316 41.1
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.8e-50 203.8 296 41.6
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 9.1e-50 201.4 254 44.5
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.6e-49 199.9 215 47.4
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.2e-48 196.8 272 45.6
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 5.0e-48 195.7 362 35.4
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 8.5e-48 194.9 159 64.2
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 7.2e-47 191.8 239 46.4
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.6e-46 190.7 280 41.8
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 4.7e-46 189.1 242 46.7
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.1e-44 184.5 330 39.1
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 5.3e-42 175.6 272 40.8
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 7.7e-41 171.8 411 30.9
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 2.2e-40 170.2 321 37.1
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.9e-39 167.2 412 31.8
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 3.2e-39 166.4 168 50.6
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 2.1e-38 163.7 311 37.9
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 2.6e-36 156.8 157 51.0
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 5.3e-34 149.1 156 48.1
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 1.2e-33 147.9 122 54.9
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 7.7e-33 145.2 269 39.4
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 1.3e-32 144.4 290 37.2
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 6.5e-32 142.1 265 36.2
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.8e-29 134.0 112 55.4
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.8e-29 134.0 115 54.8
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 7.5e-28 128.6 150 46.7
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.3e-27 127.9 119 51.3
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 8.3e-27 125.2 147 48.3
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.1e-26 124.8 112 53.6
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.6e-25 120.9 148 48.0
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 2.3e-24 117.1 90 61.1
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 2.3e-24 117.1 164 40.2
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 5.5e-23 112.5 287 30.7
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 6.8e-21 105.5 88 59.1
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.2e-20 104.8 88 58.0
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 4.4e-20 102.8 89 58.4
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.2e-19 100.5 157 38.2
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 6.3e-19 99.0 82 61.0
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.8e-18 97.4 360 26.9
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 2.9e-16 90.1 251 30.7
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 6.6e-16 89.0 91 52.7
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.6e-14 84.3 118 43.2
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 8.0e-14 82.0 99 45.5
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.0e-13 79.7 82 45.1
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.4e-10 71.2 326 26.1
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 4.1e-10 69.7 91 40.7
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 5.6e-07 59.3 114 38.6


User provided reference genes

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