Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 6.3e-255 883.6 452 100.0
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 6.3e-231 803.9 452 90.0
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 2.8e-202 708.8 449 78.0
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 6.4e-199 697.6 448 75.7
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 1.5e-195 686.4 448 75.0
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.6e-192 675.6 452 73.2
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 7.5e-192 674.1 453 73.3
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.9e-191 672.2 451 72.3
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 4.9e-191 671.4 452 71.2
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.4e-190 669.1 453 72.0
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 3.2e-190 668.7 448 72.1
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 5.4e-190 667.9 448 72.1
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.7e-189 665.6 448 72.5
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 4.6e-189 664.8 453 72.2
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 6.0e-189 664.5 470 70.9
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 6.0e-189 664.5 450 70.7
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 6.0e-189 664.5 450 70.7
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 2.3e-188 662.5 447 70.7
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.3e-188 662.5 457 70.9
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 3.0e-188 662.1 447 70.9
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 3.0e-188 662.1 452 71.0
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 3.9e-188 661.8 462 70.1
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 3.9e-188 661.8 447 71.1
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 5.0e-188 661.4 450 70.9
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 5.0e-188 661.4 451 71.2
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 6.6e-188 661.0 448 71.7
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 6.6e-188 661.0 454 72.0
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 1.9e-187 659.4 453 71.3
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 2.5e-187 659.1 449 70.2
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.5e-187 659.1 466 69.5
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 4.3e-187 658.3 452 70.8
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 1.2e-186 656.8 450 72.2
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 1.6e-186 656.4 448 71.4
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 1.6e-186 656.4 448 70.3
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 3.6e-186 655.2 452 70.1
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 4.7e-186 654.8 447 70.0
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 1.1e-185 653.7 447 70.0
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 1.1e-185 653.7 452 70.4
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 3.1e-185 652.1 450 71.6
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 5.2e-185 651.4 450 69.1
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 5.2e-185 651.4 447 69.8
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 4.4e-184 648.3 447 69.4
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 4.4e-184 648.3 453 68.9
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 1.3e-183 646.7 454 71.1
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 2.2e-183 646.0 448 71.2
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 2.2e-183 646.0 452 69.0
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 1.1e-182 643.7 482 66.6
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 1.9e-182 642.9 447 69.4
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 1.9e-182 642.9 452 68.8
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 3.2e-182 642.1 448 69.0
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 4.1e-182 641.7 453 68.9
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 4.1e-182 641.7 452 69.5
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 5.4e-182 641.3 452 69.5
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 7.1e-182 641.0 447 68.7
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 9.2e-182 640.6 482 66.2
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 1.6e-181 639.8 447 68.5
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 2.1e-181 639.4 452 68.8
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 6.0e-181 637.9 450 68.7
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 7.8e-181 637.5 459 68.8
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 7.8e-181 637.5 452 68.1
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 1.3e-180 636.7 448 68.3
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 1.7e-180 636.3 450 68.0
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 1.5e-179 633.3 444 68.2
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 2.5e-179 632.5 448 67.2
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 4.7e-178 628.2 450 68.7
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 2.0e-176 622.9 472 64.8
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 2.4e-174 615.9 478 65.7
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 7.1e-174 614.4 451 66.7
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 6.0e-173 611.3 409 73.6
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 8.1e-170 600.9 452 67.7
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 6.9e-169 597.8 457 65.4
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.2e-167 592.8 407 72.0
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 8.4e-167 590.9 448 67.0
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 2.7e-165 585.9 484 61.6
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 4.6e-165 585.1 452 64.8
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 1.7e-164 583.2 467 63.0
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 8.7e-164 580.9 471 62.2
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 1.9e-163 579.7 477 61.0
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.0e-160 569.7 456 63.6
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 2.7e-157 559.3 440 62.5
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 1.1e-155 553.9 494 58.1
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 1.6e-154 550.1 452 62.6
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.6e-154 550.1 514 57.4
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 2.8e-154 549.3 384 70.1
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 1.8e-153 546.6 556 53.8
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 1.5e-152 543.5 452 60.4
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.5e-152 543.5 515 55.7
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 7.6e-152 541.2 399 64.9
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 6.4e-151 538.1 399 66.4
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.2e-149 533.9 494 57.5
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 1.3e-148 530.4 448 61.4
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 9.6e-147 524.2 427 64.2
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 9.6e-147 524.2 335 75.5
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 1.6e-146 523.5 448 58.5
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 8.2e-146 521.2 355 71.8
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 1.5e-144 516.9 454 56.8
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 2.4e-137 493.0 486 53.7
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 1.3e-135 487.3 454 55.1
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 1.8e-132 476.9 325 70.8
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 5.9e-120 435.3 501 49.1
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 5.9e-120 435.3 458 49.8
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 8.5e-119 431.4 417 54.2
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 1.9e-118 430.3 296 72.0
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 2.0e-112 410.2 296 67.6
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 7.7e-112 408.3 446 48.2
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 4.7e-109 399.1 447 46.1
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.3e-106 391.0 343 59.5
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.0e-99 367.1 268 68.7
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.0e-95 354.8 230 75.2
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 5.5e-94 349.0 272 64.0
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 2.8e-85 320.1 433 42.5
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 1.7e-79 300.8 208 71.6
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 3.9e-71 273.1 256 56.6
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 6.4e-66 255.8 226 54.9
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 4.1e-65 253.1 283 49.8
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 2.7e-64 250.4 521 33.8
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 3.3e-62 243.4 236 55.1
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.8e-60 237.7 455 32.5
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.2e-59 235.0 182 66.5
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.2e-59 235.0 457 33.0
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 3.4e-59 233.4 171 66.7
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.4e-52 211.5 545 27.9
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 9.0e-52 208.8 148 67.6
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 3.4e-51 206.8 325 42.8
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 8.7e-47 192.2 126 73.0
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.8e-34 150.2 99 68.7
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.8e-34 150.2 99 68.7
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.5e-33 147.5 98 68.4
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 6.0e-32 142.9 119 63.9
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 1.1e-30 138.7 111 66.7
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.6e-27 127.5 95 63.2
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 6.7e-23 112.8 70 78.6
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 9.7e-22 109.0 69 76.8
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.6e-21 108.2 58 86.2
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.8e-21 107.5 69 75.4
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 2.2e-18 97.8 184 38.6
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.8e-15 88.2 84 51.2
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 5.7e-14 83.2 55 65.5
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.8e-13 80.1 59 61.0
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 6.3e-13 79.7 51 76.5
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 4.1e-12 77.0 52 67.3
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.2e-11 75.5 58 58.6
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 3.4e-11 73.9 62 50.0
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 1.6e-08 65.1 68 54.4
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 1.5e-06 58.5 39 74.4
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.6e-06 57.8 38 73.7
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.7e-06 56.6 36 77.8


User provided reference genes

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