Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 2.6e-60 235.3 131 100.0
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 2.2e-11 72.8 37 83.8
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 3.2e-10 68.9 37 78.4
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.2e-10 68.9 37 78.4
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 4.2e-10 68.6 37 78.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 7.2e-10 67.8 37 78.4
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 9.3e-10 67.4 37 75.7
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.2e-09 67.0 37 78.4
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.6e-09 66.6 37 75.7
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.1e-09 66.2 37 75.7
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.1e-09 66.2 37 75.7
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 2.7e-09 65.9 37 75.7
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 3.5e-09 65.5 37 75.7
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 3.5e-09 65.5 37 75.7
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.5e-09 65.5 37 73.0
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 3.5e-09 65.5 37 73.0
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 3.5e-09 65.5 37 73.0
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 3.5e-09 65.5 37 75.7
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.5e-09 65.5 37 75.7
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 3.5e-09 65.5 37 75.7
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 4.6e-09 65.1 37 73.0
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 4.6e-09 65.1 37 73.0
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.6e-09 65.1 37 73.0
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 4.6e-09 65.1 37 75.7
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 4.6e-09 65.1 37 73.0
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 4.6e-09 65.1 37 73.0
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 6.1e-09 64.7 37 73.0
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 6.1e-09 64.7 37 73.0
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 6.1e-09 64.7 37 73.0
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 6.1e-09 64.7 37 75.7
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 7.9e-09 64.3 37 78.4
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 7.9e-09 64.3 37 75.7
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.9e-09 64.3 37 73.0
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.9e-09 64.3 37 73.0
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.0e-08 63.9 37 70.3
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.0e-08 63.9 37 70.3
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.0e-08 63.9 37 70.3
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 1.0e-08 63.9 37 73.0
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.0e-08 63.9 37 70.3
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.3e-08 63.5 37 70.3
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.3e-08 63.5 37 73.0
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.8e-08 63.2 37 70.3
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 1.8e-08 63.2 37 67.6
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.8e-08 63.2 37 70.3
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.8e-08 63.2 37 70.3
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.8e-08 63.2 37 70.3
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.3e-08 62.8 37 73.0
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.3e-08 62.8 37 73.0
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.3e-08 62.8 37 70.3
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.3e-08 62.8 37 70.3
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.3e-08 62.8 37 70.3
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.0e-08 62.4 37 70.3
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 3.9e-08 62.0 37 67.6
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 3.9e-08 62.0 37 64.9
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 3.9e-08 62.0 37 67.6
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 3.9e-08 62.0 37 67.6
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 5.1e-08 61.6 37 67.6
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 5.1e-08 61.6 37 67.6
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 5.1e-08 61.6 37 64.9
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 5.1e-08 61.6 37 64.9
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 5.1e-08 61.6 37 64.9
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 5.1e-08 61.6 37 64.9
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 5.1e-08 61.6 37 70.3
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 5.1e-08 61.6 37 70.3
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 6.7e-08 61.2 38 71.1
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 6.7e-08 61.2 37 67.6
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 6.7e-08 61.2 37 70.3
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 8.7e-08 60.8 37 64.9
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 8.7e-08 60.8 37 67.6
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 8.7e-08 60.8 37 70.3
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 8.7e-08 60.8 37 70.3
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 8.7e-08 60.8 37 67.6
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 8.7e-08 60.8 37 67.6
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 8.7e-08 60.8 37 64.9
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.1e-07 60.5 37 70.3
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.1e-07 60.5 37 64.9
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.1e-07 60.5 37 67.6
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.5e-07 60.1 37 64.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.5e-07 60.1 37 64.9
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.5e-07 60.1 37 67.6
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.5e-07 60.1 37 67.6
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 1.9e-07 59.7 37 67.6
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 1.9e-07 59.7 37 67.6
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.9e-07 59.7 37 67.6
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.9e-07 59.7 37 64.9
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.5e-07 59.3 37 67.6
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.3e-07 58.9 37 70.3
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.3e-07 58.9 37 70.3
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.3e-07 58.9 37 64.9
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 4.3e-07 58.5 37 67.6
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 4.3e-07 58.5 37 67.6
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 7.4e-07 57.8 37 67.6
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 7.4e-07 57.8 37 62.2
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 7.4e-07 57.8 37 62.2
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 7.4e-07 57.8 37 62.2
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 7.4e-07 57.8 37 62.2
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 7.4e-07 57.8 37 64.9
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 9.7e-07 57.4 37 67.6
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 9.7e-07 57.4 37 67.6
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 9.7e-07 57.4 36 66.7
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 9.7e-07 57.4 37 70.3
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.3e-06 57.0 37 59.5
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.3e-06 57.0 37 62.2
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.3e-06 57.0 37 64.9
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.6e-06 56.6 37 62.2
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.6e-06 56.6 37 62.2
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 2.2e-06 56.2 37 59.5
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 2.2e-06 56.2 37 67.6
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 2.2e-06 56.2 37 67.6
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 2.8e-06 55.8 37 64.9
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 3.7e-06 55.5 37 56.8
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 3.7e-06 55.5 37 56.8
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.7e-06 55.5 36 63.9
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 4.8e-06 55.1 37 67.6
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 6.3e-06 54.7 37 62.2
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 6.3e-06 54.7 37 59.5


User provided reference genes

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