Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0389901 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 2.7e-137 491.9 232 100.0
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 1.8e-16 90.5 48 87.5
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 2.6e-10 70.1 49 67.3
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 1.8e-08 63.9 47 63.8
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 3.1e-08 63.2 47 59.6
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 5.3e-08 62.4 47 59.6
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 5.3e-08 62.4 47 59.6
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 7.0e-08 62.0 47 57.4
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 9.1e-08 61.6 47 55.3
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 1.2e-07 61.2 47 57.4
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 1.2e-07 61.2 77 40.3
SEGI_00418 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 1.2e-07 61.2 47 55.3
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 1.5e-07 60.8 47 55.3
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 1.5e-07 60.8 47 55.3
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 1.5e-07 60.8 47 57.4
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.5e-07 60.8 47 55.3
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 1.5e-07 60.8 47 57.4
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 1.5e-07 60.8 47 57.4
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 1.5e-07 60.8 47 55.3
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 1.5e-07 60.8 47 55.3
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 1.5e-07 60.8 47 55.3
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 2.0e-07 60.5 47 57.4
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 2.0e-07 60.5 47 55.3
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 57.4
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 2.6e-07 60.1 47 55.3
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 3.4e-07 59.7 47 55.3
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 3.4e-07 59.7 47 53.2
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 3.4e-07 59.7 47 55.3
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 3.4e-07 59.7 47 55.3
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 4.5e-07 59.3 47 53.2
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 4.5e-07 59.3 47 55.3
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 4.5e-07 59.3 42 61.9
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 5.9e-07 58.9 47 51.1
Cpa.g.sc202.3 Carica papaya HOM05D004035 ORTHO05D004631 5.9e-07 58.9 47 53.2
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 5.9e-07 58.9 47 55.3
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 7.7e-07 58.5 47 55.3
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 7.7e-07 58.5 47 53.2
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 7.7e-07 58.5 48 54.2
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 7.7e-07 58.5 48 54.2
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 7.7e-07 58.5 47 55.3
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 7.7e-07 58.5 45 55.6
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 7.7e-07 58.5 47 55.3
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 7.7e-07 58.5 47 55.3
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 7.7e-07 58.5 47 55.3
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 7.7e-07 58.5 47 53.2
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 7.7e-07 58.5 47 53.2
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 7.7e-07 58.5 45 55.6
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 7.7e-07 58.5 47 51.1
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 1.0e-06 58.2 47 55.3
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 1.0e-06 58.2 47 53.2
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.0e-06 58.2 47 53.2
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 1.0e-06 58.2 47 53.2
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 1.0e-06 58.2 47 53.2
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 1.3e-06 57.8 47 55.3
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 1.3e-06 57.8 47 55.3
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 1.3e-06 57.8 47 55.3
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 1.3e-06 57.8 47 55.3
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 1.3e-06 57.8 47 55.3
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 53.2
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 53.2
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 53.2
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 53.2
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 53.2
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 51.1
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 51.1
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 53.2
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 53.2
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 1.7e-06 57.4 48 54.2
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 53.2
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 51.1
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 51.1
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 1.7e-06 57.4 47 53.2
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 2.2e-06 57.0 47 53.2
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 2.2e-06 57.0 47 53.2
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 2.2e-06 57.0 47 53.2
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 2.2e-06 57.0 47 53.2
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 2.2e-06 57.0 47 53.2
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 2.2e-06 57.0 47 53.2
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 51.1
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 51.1
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 51.1
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 53.2
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 51.1
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 55.3
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 53.2
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 55.3
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 55.3
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 53.2
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 53.2
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 53.2
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 2.9e-06 56.6 47 53.2
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 3.8e-06 56.2 47 55.3
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 3.8e-06 56.2 47 55.3
MBI07_g05961_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 3.8e-06 56.2 44 56.8
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 3.8e-06 56.2 48 52.1
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 3.8e-06 56.2 47 51.1
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 3.8e-06 56.2 47 48.9
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 6.5e-06 55.5 47 51.1
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 8.5e-06 55.1 47 51.1
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 8.5e-06 55.1 45 53.3


User provided reference genes

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