Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0387300 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D296102 7.0e-50 200.3 100 100.0
Sopen10g030640 Solanum pennellii HOM05D000042 ORTHO05D000028 3.9e-08 61.6 58 56.9
arahy.Tifrunner.gnm1.ann1.9AY56M Arachis hypogaea HOM05D000042 ORTHO05D000028 8.7e-08 60.5 62 41.9
Solyc10g080030.2 Solanum lycopersicum HOM05D000042 ORTHO05D000028 1.5e-07 59.7 58 55.2
PGSC0003DMG400023729 Solanum tuberosum HOM05D000042 ORTHO05D000028 1.5e-07 59.7 58 53.4
Zm00001eb409460 Zea mays HOM05D000042 ORTHO05D000028 1.9e-07 59.3 61 52.5
CAN.G683.5 Capsicum annuum HOM05D000042 ORTHO05D003657 2.5e-07 58.9 69 37.7
Zm00001eb041650 Zea mays HOM05D000042 ORTHO05D000028 2.5e-07 58.9 55 54.5
CANSAT64G0107 Cannabis sativa HOM05D000042 ORTHO05D000028 4.3e-07 58.2 70 44.3
BcaC04g23471 Brassica carinata HOM05D000042 ORTHO05D000028 5.7e-07 57.8 67 43.3
BolC9t53713H Brassica oleracea HOM05D000042 ORTHO05D000028 5.7e-07 57.8 67 43.3
CAN.G1122.3 Capsicum annuum HOM05D000042 ORTHO05D003657 5.7e-07 57.8 64 42.2
CAN.G683.4 Capsicum annuum HOM05D000042 ORTHO05D003657 9.6e-07 57.0 64 37.5
Eucgr.I02598 Eucalyptus grandis HOM05D000042 ORTHO05D000028 9.6e-07 57.0 72 41.7
Gohir.D13G048333 Gossypium hirsutum HOM05D000042 ORTHO05D000028 9.6e-07 57.0 54 50.0
Zm00001eb260590 Zea mays HOM05D000042 ORTHO05D008481 9.6e-07 57.0 57 49.1
Migut.H00589 Erythranthe guttata HOM05D000042 ORTHO05D000028 1.3e-06 56.6 72 38.9
arahy.Tifrunner.gnm1.ann1.SJTD5W Arachis hypogaea HOM05D000042 ORTHO05D000028 1.6e-06 56.2 62 45.2
arahy.Tifrunner.gnm1.ann1.Y0XCRM Arachis hypogaea HOM05D000042 ORTHO05D000028 1.6e-06 56.2 62 45.2
CAN.G93.50 Capsicum annuum HOM05D000042 ORTHO05D000028 1.6e-06 56.2 69 39.1
CiPaw.05G122800 Carya illinoinensis HOM05D000042 ORTHO05D000028 1.6e-06 56.2 71 42.3
Lj2g0014435 Lotus japonicus HOM05D000042 ORTHO05D000028 1.6e-06 56.2 60 45.0
Sc04g0004180 Simmondsia chinensis HOM05D000042 ORTHO05D000028 1.6e-06 56.2 76 40.8
Sc11g0008800 Simmondsia chinensis HOM05D000042 ORTHO05D000028 1.6e-06 56.2 77 37.7
Zm00001eb174000 Zea mays HOM05D000042 ORTHO05D008481 1.6e-06 56.2 80 41.2
CAN.G683.7 Capsicum annuum HOM05D000042 ORTHO05D003657 2.1e-06 55.8 64 42.2
Gohir.A13G049701 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.1e-06 55.8 54 48.1
Os04g0304400 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D000028 2.1e-06 55.8 57 47.4
CAN.G683.2 Capsicum annuum HOM05D000042 ORTHO05D003657 2.8e-06 55.5 64 43.8
Gohir.D13G048200 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.8e-06 55.5 54 48.1
Gorai.013G053800 Gossypium raimondii HOM05D000042 ORTHO05D000028 2.8e-06 55.5 54 48.1
BcaB04g19898 Brassica carinata HOM05D000042 ORTHO05D000028 3.7e-06 55.1 67 41.8
C09p08000 Brassica napus HOM05D000600 ORTHO05D000432 3.7e-06 55.1 67 41.8
BraA09t36363Z Brassica rapa HOM05D000042 ORTHO05D000028 3.7e-06 55.1 67 41.8
CSS0023376 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 3.7e-06 55.1 58 46.6
CSS0039724 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 3.7e-06 55.1 58 46.6
CDE02G1010 Ceratophyllum demersum HOM05D000042 ORTHO05D000028 3.7e-06 55.1 65 40.0
CDE06G1649 Ceratophyllum demersum HOM05D000042 ORTHO05D000028 3.7e-06 55.1 65 40.0
Gohir.A13G049850 Gossypium hirsutum HOM05D000042 ORTHO05D000028 3.7e-06 55.1 54 48.1
HanXRQChr01g0007901 Helianthus annuus HOM05D000042 ORTHO05D045202 3.7e-06 55.1 60 46.7
Lsat_1_v5_gn_1_15321 Lactuca sativa HOM05D000042 ORTHO05D000028 3.7e-06 55.1 55 49.1
Peaxi162Scf00109g00139 Petunia axillaris HOM05D000042 ORTHO05D000028 3.7e-06 55.1 57 49.1
PGSC0003DMG400026563 Solanum tuberosum HOM05D000042 ORTHO05D000028 3.7e-06 55.1 65 38.5
THA.LOC104801073 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 3.7e-06 55.1 67 41.8
HPP92_012259 Vanilla planifolia HOM05D000042 ORTHO05D000028 3.7e-06 55.1 74 36.5
EL10Ac3g05289 Beta vulgaris HOM05D000042 ORTHO05D000028 4.8e-06 54.7 68 38.2
A08p27290 Brassica napus HOM05D000042 ORTHO05D000028 4.8e-06 54.7 77 35.1
BolC3t19551H Brassica oleracea HOM05D000042 ORTHO05D000028 4.8e-06 54.7 77 35.1
BolC6t39357H Brassica oleracea HOM05D000042 ORTHO05D000028 4.8e-06 54.7 77 37.7
BraA08t34672Z Brassica rapa HOM05D000042 ORTHO05D000028 4.8e-06 54.7 77 35.1
CSS0019120 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 4.8e-06 54.7 56 51.8
CSS0046108 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 4.8e-06 54.7 56 50.0
Carub.0005s0848 Capsella rubella HOM05D000042 ORTHO05D000028 4.8e-06 54.7 70 42.9
Cc11_g11710 Coffea canephora HOM05D000042 ORTHO05D000028 4.8e-06 54.7 62 43.5
Migut.D01622 Erythranthe guttata HOM05D000042 ORTHO05D000028 4.8e-06 54.7 62 43.5
Gorai.013G054000 Gossypium raimondii HOM05D000042 ORTHO05D000028 4.8e-06 54.7 54 46.3
HanXRQChr10g0299591 Helianthus annuus HOM05D000042 ORTHO05D000028 4.8e-06 54.7 57 47.4
Lsat_1_v5_gn_9_31261 Lactuca sativa HOM05D000042 ORTHO05D000028 4.8e-06 54.7 57 47.4
Manes.13G103666 Manihot esculenta HOM05D000042 ORTHO05D000028 4.8e-06 54.7 57 47.4
Os12g0206800 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D008481 4.8e-06 54.7 58 44.8
Peaxi162Scf00017g03265 Petunia axillaris HOM05D000042 ORTHO05D000028 4.8e-06 54.7 66 40.9
PGR142G1517 Punica granatum HOM05D000042 ORTHO05D000028 4.8e-06 54.7 57 43.9
Sp1g22380 Schrenkiella parvula HOM05D000042 ORTHO05D000028 4.8e-06 54.7 77 35.1
TPR.G38478 Trifolium pratense HOM05D000042 ORTHO05D000028 4.8e-06 54.7 71 39.4
vmacro00928 Vaccinium macrocarpon HOM05D000042 ORTHO05D008481 4.8e-06 54.7 57 47.4
BcaC03g18061 Brassica carinata HOM05D000042 ORTHO05D000028 6.2e-06 54.3 67 40.3
C02p61250 Brassica napus HOM05D000042 ORTHO05D000028 6.2e-06 54.3 67 40.3
BolC2t12170H Brassica oleracea HOM05D000042 ORTHO05D000028 6.2e-06 54.3 67 40.3
Ciclev10016394m.g Citrus clementina HOM05D000042 ORTHO05D000980 6.2e-06 54.3 65 46.2
Cc07_g04450 Coffea canephora HOM05D000042 ORTHO05D000028 6.2e-06 54.3 66 40.9
Eucgr.F02956 Eucalyptus grandis HOM05D000042 ORTHO05D008481 6.2e-06 54.3 72 37.5
Glyma.01G020500 Glycine max HOM05D000042 ORTHO05D000028 6.2e-06 54.3 77 39.0
Gohir.A07G079100 Gossypium hirsutum HOM05D000042 ORTHO05D000028 6.2e-06 54.3 63 42.9
Gohir.D07G084400 Gossypium hirsutum HOM05D000042 ORTHO05D000028 6.2e-06 54.3 63 42.9
Gorai.001G090000 Gossypium raimondii HOM05D000042 ORTHO05D000028 6.2e-06 54.3 63 42.9
Solyc06g069430.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 6.2e-06 54.3 62 45.2
Sopen06g026710 Solanum pennellii HOM05D000042 ORTHO05D000028 6.2e-06 54.3 62 45.2
Zm00001eb006480 Zea mays HOM05D000042 ORTHO05D001427 6.2e-06 54.3 63 46.0
AL8G37530 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 8.2e-06 53.9 67 40.3
AT5G60910 Arabidopsis thaliana HOM05D000042 ORTHO05D000028 8.2e-06 53.9 67 40.3
arahy.Tifrunner.gnm1.ann1.WIWA1B Arachis hypogaea HOM05D000042 ORTHO05D000028 8.2e-06 53.9 62 41.9
BcaB07g29878 Brassica carinata HOM05D000042 ORTHO05D000028 8.2e-06 53.9 67 40.3
A02p41280 Brassica napus HOM05D000042 ORTHO05D000028 8.2e-06 53.9 67 40.3
BraA02t09072Z Brassica rapa HOM05D000042 ORTHO05D000028 8.2e-06 53.9 67 40.3
BraA03t13786Z Brassica rapa HOM05D000042 ORTHO05D000028 8.2e-06 53.9 67 40.3
CSS0006041 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 8.2e-06 53.9 56 50.0
CANSAT01G1636 Cannabis sativa HOM05D000042 ORTHO05D000028 8.2e-06 53.9 57 45.6
Carub.0008s2160 Capsella rubella HOM05D000042 ORTHO05D000028 8.2e-06 53.9 74 36.5
CARHR274590 Cardamine hirsuta HOM05D000042 ORTHO05D000028 8.2e-06 53.9 74 36.5
Thhalv10004769m.g Eutrema salsugineum HOM05D000042 ORTHO05D000028 8.2e-06 53.9 67 40.3
FAN22G2346 Fragaria x ananassa HOM05D000042 ORTHO05D000028 8.2e-06 53.9 62 43.5
Lsat_1_v5_gn_4_173601 Lactuca sativa HOM05D000042 ORTHO05D000028 8.2e-06 53.9 62 43.5
Nitab4.5_0002449g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000028 8.2e-06 53.9 62 43.5
Solyc02g065730.2 Solanum lycopersicum HOM05D000042 ORTHO05D000028 8.2e-06 53.9 56 44.6
Sopen02g015950 Solanum pennellii HOM05D000042 ORTHO05D000028 8.2e-06 53.9 56 44.6
PGSC0003DMG400017760 Solanum tuberosum HOM05D000042 ORTHO05D003657 8.2e-06 53.9 65 36.9
Thecc.08G195500 Theobroma cacao HOM05D000042 ORTHO05D008481 8.2e-06 53.9 56 46.4


User provided reference genes

Program Settings