Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 4.8e-67 257.7 130 100.0
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 5.6e-47 191.0 115 82.6
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 5.6e-47 191.0 115 82.6
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 9.5e-47 190.3 115 82.6
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 1.6e-46 189.5 115 81.7
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 2.8e-46 188.7 115 81.7
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.4e-45 186.4 115 80.9
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 4.0e-45 184.9 115 81.7
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 6.8e-45 184.1 111 82.9
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 6.8e-45 184.1 111 83.8
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 8.9e-45 183.7 115 81.7
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 8.9e-45 183.7 115 81.7
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 8.9e-45 183.7 115 81.7
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.2e-44 183.3 115 80.9
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 1.2e-44 183.3 115 80.9
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.5e-44 183.0 115 79.1
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 1.5e-44 183.0 115 80.9
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.5e-44 183.0 115 79.1
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 1.5e-44 183.0 115 80.0
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 2.0e-44 182.6 112 82.1
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 2.6e-44 182.2 115 79.1
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 2.6e-44 182.2 115 79.1
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 2.6e-44 182.2 115 79.1
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 2.6e-44 182.2 115 79.1
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 2.6e-44 182.2 115 79.1
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 2.6e-44 182.2 115 79.1
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 2.6e-44 182.2 115 79.1
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 2.6e-44 182.2 115 79.1
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 3.4e-44 181.8 115 79.1
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 3.4e-44 181.8 115 80.0
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 4.4e-44 181.4 115 80.0
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 4.4e-44 181.4 115 80.0
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 4.4e-44 181.4 115 80.0
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.4e-44 181.4 115 77.4
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.4e-44 181.4 115 77.4
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.4e-44 181.4 115 77.4
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.4e-44 181.4 115 77.4
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.4e-44 181.4 115 77.4
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 4.4e-44 181.4 115 77.4
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 5.8e-44 181.0 115 78.3
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 9.8e-44 180.3 115 78.3
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 9.8e-44 180.3 115 79.1
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 1.7e-43 179.5 111 82.0
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 2.2e-43 179.1 116 78.4
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.9e-43 178.7 111 81.1
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 4.9e-43 177.9 115 76.5
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.9e-42 176.0 115 76.5
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 2.4e-42 175.6 115 78.3
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 5.4e-42 174.5 115 79.1
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 2.7e-41 172.2 115 76.5
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 4.6e-41 171.4 115 74.8
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 1.3e-40 169.9 115 72.2
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 1.7e-40 169.5 115 70.4
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 5.0e-40 167.9 108 76.9
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 8.0e-38 160.6 114 74.6
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 8.0e-38 160.6 114 74.6
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 6.8e-37 157.5 110 73.6
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.4e-34 149.1 94 78.7
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.4e-34 149.1 94 78.7
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.4e-34 149.1 94 78.7
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 5.4e-34 147.9 94 80.9
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 1.2e-33 146.7 93 81.7
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 1.6e-33 146.4 110 74.5
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 6.0e-33 144.4 82 85.4
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 6.0e-33 144.4 82 85.4
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 1.3e-32 143.3 93 76.3
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 2.3e-32 142.5 94 76.6
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.9e-32 141.7 93 81.7
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.9e-32 141.7 93 81.7
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 6.2e-30 134.4 89 77.5
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 3.7e-27 125.2 115 61.7
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 1.9e-23 112.8 73 76.7
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 2.6e-20 102.4 65 76.9
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 3.4e-20 102.1 63 77.8
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 7.6e-20 100.9 56 83.9
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.9e-18 96.3 69 73.9
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 9.2e-18 94.0 110 43.6
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 6.6e-16 87.8 56 78.6
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 8.7e-16 87.4 52 80.8
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 3.3e-15 85.5 111 46.8
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 3.6e-14 82.0 46 82.6
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 2.6e-12 75.9 51 76.5
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-11 72.4 37 86.5
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 3.8e-11 72.0 35 91.4
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.8e-11 72.0 51 66.7
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.4e-11 71.2 56 66.1
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 1.9e-10 69.7 74 56.8
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 2.4e-10 69.3 35 85.7
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 2.4e-10 69.3 35 85.7
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 4.2e-10 68.6 47 74.5
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-09 67.0 50 70.0
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.5e-09 65.5 47 74.5
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 1.7e-08 63.2 50 70.0
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 3.9e-08 62.0 47 70.2
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 8.7e-08 60.8 106 38.7
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 3.3e-07 58.9 107 40.2
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 3.6e-06 55.5 44 63.6


User provided reference genes

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