Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.3e-191 672.9 347 100.0
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.2e-74 283.5 351 49.9
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 2.5e-62 243.4 255 53.7
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 2.1e-61 240.4 351 46.2
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 4.9e-58 229.2 372 41.7
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 5.4e-57 225.7 378 42.1
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 4.6e-56 222.6 362 42.0
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 6.0e-56 222.2 337 41.8
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 7.9e-56 221.9 369 42.5
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 1.7e-55 220.7 368 40.8
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 3.0e-55 219.9 247 49.0
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 8.7e-55 218.4 368 42.4
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.1e-54 218.0 354 42.1
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.1e-54 218.0 333 41.1
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 1.5e-54 217.6 364 42.0
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.9e-54 217.2 317 43.2
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.9e-54 217.2 268 45.5
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 1.9e-54 217.2 327 41.3
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 2.5e-54 216.9 247 49.0
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 2.5e-54 216.9 352 42.0
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 3.3e-54 216.5 309 44.7
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.3e-54 216.5 345 42.0
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 3.3e-54 216.5 368 40.5
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 3.3e-54 216.5 372 41.1
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 3.3e-54 216.5 364 42.0
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.3e-54 216.1 268 45.9
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 5.6e-54 215.7 301 43.2
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 5.6e-54 215.7 362 40.9
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 7.3e-54 215.3 330 42.1
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 7.3e-54 215.3 316 42.4
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 9.6e-54 214.9 304 43.1
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 9.6e-54 214.9 374 41.2
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.3e-53 214.5 268 45.1
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.3e-53 214.5 364 40.1
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.3e-53 214.5 327 43.1
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.3e-53 214.5 309 43.7
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 2.8e-53 213.4 370 39.2
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.8e-53 213.4 268 44.8
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 3.6e-53 213.0 371 38.5
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.6e-53 213.0 268 44.4
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 3.6e-53 213.0 303 43.2
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 4.8e-53 212.6 334 40.7
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 6.2e-53 212.2 358 41.3
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 8.1e-53 211.8 352 42.6
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 8.1e-53 211.8 245 47.3
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 8.1e-53 211.8 375 40.5
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.1e-52 211.5 373 40.5
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 1.4e-52 211.1 331 43.2
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 1.8e-52 210.7 363 39.9
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.8e-52 210.7 360 38.6
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 4.0e-52 209.5 324 41.0
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 5.3e-52 209.1 296 45.3
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 5.3e-52 209.1 245 47.3
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 6.9e-52 208.8 350 40.6
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 6.9e-52 208.8 311 44.7
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 9.0e-52 208.4 316 41.5
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 9.0e-52 208.4 275 45.5
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 9.0e-52 208.4 318 43.1
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 9.0e-52 208.4 339 40.7
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.2e-51 208.0 324 42.3
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 1.2e-51 208.0 365 38.6
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 1.2e-51 208.0 322 39.4
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 2.0e-51 207.2 291 43.3
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.6e-51 206.8 300 42.3
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 2.6e-51 206.8 364 39.3
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 2.6e-51 206.8 374 40.4
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 3.4e-51 206.5 283 43.1
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 3.4e-51 206.5 366 38.3
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 7.6e-51 205.3 324 42.6
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 9.9e-51 204.9 334 39.8
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 9.9e-51 204.9 360 39.2
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 1.3e-50 204.5 308 42.2
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.3e-50 204.5 367 38.7
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.7e-50 204.1 333 40.2
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 2.2e-50 203.8 298 44.0
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 2.2e-50 203.8 359 40.1
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 2.9e-50 203.4 324 42.3
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 2.9e-50 203.4 341 41.9
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 4.9e-50 202.6 244 45.9
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 4.9e-50 202.6 362 39.0
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 8.4e-50 201.8 300 42.3
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.1e-49 201.4 256 46.9
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.1e-49 201.4 380 39.2
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 1.4e-49 201.1 303 41.6
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.4e-49 200.3 308 41.2
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 3.2e-49 199.9 304 42.4
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 3.2e-49 199.9 347 40.1
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 9.3e-49 198.4 417 35.3
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 6.0e-48 195.7 319 40.1
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 6.0e-48 195.7 363 39.9
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.3e-47 194.5 364 36.8
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 3.9e-47 193.0 362 39.0
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 5.1e-47 192.6 305 41.0
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 5.1e-47 192.6 388 35.1
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.9e-46 190.7 348 40.5
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 3.3e-46 189.9 314 40.4
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 5.6e-46 189.1 307 42.0
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 1.6e-45 187.6 335 38.8
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 1.4e-44 184.5 246 43.1
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 5.3e-44 182.6 320 39.7
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.2e-43 181.4 315 41.6
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 3.4e-43 179.9 346 37.3
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 3.8e-42 176.4 346 36.4
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 3.8e-42 176.4 346 36.4
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 8.4e-42 175.3 347 37.2
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 2.5e-41 173.7 345 37.1
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.1e-40 170.6 343 38.2
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 2.3e-39 167.2 219 42.9
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.1e-38 164.9 333 37.8
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 1.1e-38 164.9 326 37.7
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 3.7e-37 159.8 372 35.5
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 6.2e-37 159.1 224 41.1
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 9.0e-36 155.2 201 45.3
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 2.0e-35 154.1 355 34.4
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 4.5e-35 152.9 351 34.5
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 4.5e-35 152.9 528 28.0
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 2.9e-34 150.2 331 38.1
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 2.5e-33 147.1 320 35.6
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 9.3e-33 145.2 212 42.0
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 5.7e-30 136.0 170 45.9
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 8.8e-23 112.1 364 29.9
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 6.9e-20 102.4 316 29.7
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 8.2e-13 79.0 185 33.5
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 5.3e-12 76.3 73 53.4
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 8.8e-07 58.9 109 40.4
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 8.8e-07 58.9 109 40.4
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 2.0e-06 57.8 165 35.2
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 4.4e-06 56.6 110 40.0


User provided reference genes

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