Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 4.0e-62 241.1 110 100.0
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 3.7e-36 154.8 75 94.7
Os08g0290900 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 9.2e-19 97.1 48 91.7
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 8.7e-17 90.5 49 77.6
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 4.0e-14 81.6 75 50.7
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 2.0e-13 79.3 75 46.7
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 2.0e-13 79.3 76 51.3
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 7.6e-13 77.4 79 46.8
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 8.4e-12 73.9 75 46.7
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 1.1e-11 73.6 75 48.0
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 7.1e-11 70.9 75 44.0
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 7.1e-11 70.9 76 44.7
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 7.1e-11 70.9 70 51.4
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.2e-10 70.1 81 43.2
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.6e-10 68.2 73 45.2
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.6e-10 68.2 73 45.2
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 6.0e-10 67.8 73 45.2
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 7.8e-10 67.4 76 42.1
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 7.8e-10 67.4 81 43.2
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.0e-09 67.0 75 38.7
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.7e-09 66.2 81 43.2
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.7e-09 66.2 75 40.0
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.3e-09 65.9 75 45.3
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.3e-09 65.9 75 45.3
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 3.9e-09 65.1 73 43.8
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 5.1e-09 64.7 45 62.2
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 6.6e-09 64.3 81 38.3
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 6.6e-09 64.3 47 55.3
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 8.7e-09 63.9 72 41.7
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 8.7e-09 63.9 72 43.1
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.1e-08 63.5 45 62.2
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.1e-08 63.5 80 45.0
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.5e-08 63.2 82 40.2
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 1.5e-08 63.2 80 41.2
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.9e-08 62.8 72 41.7
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 1.9e-08 62.8 72 41.7
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.9e-08 62.8 45 60.0
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 1.9e-08 62.8 84 39.3
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.9e-08 62.8 77 42.9
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 2.5e-08 62.4 82 35.4
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.3e-08 62.0 45 62.2
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.3e-08 62.0 45 62.2
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 4.3e-08 61.6 81 39.5
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 5.6e-08 61.2 45 60.0
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 7.3e-08 60.8 78 43.6
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 7.3e-08 60.8 84 34.5
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 7.3e-08 60.8 45 55.6
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 7.3e-08 60.8 42 61.9
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 7.3e-08 60.8 80 38.8
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 7.3e-08 60.8 77 42.9
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 9.6e-08 60.5 46 58.7
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.6e-07 59.7 81 39.5
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.6e-07 59.7 81 37.0
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.6e-07 59.7 94 36.2
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.1e-07 59.3 96 34.4
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 2.1e-07 59.3 81 42.0
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 2.1e-07 59.3 71 40.8
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.1e-07 59.3 79 36.7
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.1e-07 59.3 81 38.3
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 2.8e-07 58.9 49 51.0
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.8e-07 58.9 49 51.0
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 2.8e-07 58.9 47 51.1
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 4.8e-07 58.2 41 61.0
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 4.8e-07 58.2 47 51.1
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 4.8e-07 58.2 71 42.3
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 6.2e-07 57.8 84 35.7
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 6.2e-07 57.8 45 60.0
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 6.2e-07 57.8 81 38.3
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 8.1e-07 57.4 89 34.8
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 8.1e-07 57.4 45 55.6
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.1e-06 57.0 45 55.6
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.1e-06 57.0 47 48.9
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.1e-06 57.0 47 48.9
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.1e-06 57.0 47 48.9
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.4e-06 56.6 81 35.8
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.8e-06 56.2 43 55.8
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 2.4e-06 55.8 91 36.3
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 2.4e-06 55.8 91 36.3
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 2.4e-06 55.8 91 36.3
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 2.4e-06 55.8 91 36.3
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 2.4e-06 55.8 81 35.8
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 3.1e-06 55.5 45 53.3
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.1e-06 55.5 41 56.1
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.1e-06 55.5 41 56.1
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 3.1e-06 55.5 44 52.3
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 6.9e-06 54.3 81 39.5
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 6.9e-06 54.3 79 39.2
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 6.9e-06 54.3 45 53.3
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 6.9e-06 54.3 45 51.1
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 9.0e-06 53.9 41 51.2


User provided reference genes

Program Settings