Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 2027.3 1037 100.0
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1299.3 1018 65.6
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1298.9 1018 65.5
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1297.3 1015 66.0
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1295.4 1023 65.1
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1295.0 1023 65.3
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1294.3 1024 64.8
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1293.1 1024 64.8
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1291.9 1021 65.0
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1287.7 1024 65.0
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1286.9 955 68.3
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1286.2 1019 64.7
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1285.4 1026 64.8
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1283.9 1019 65.0
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1283.5 1019 64.9
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1282.7 1024 65.0
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1282.3 1017 65.0
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1281.5 1015 64.6
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1281.5 1031 64.5
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1279.6 1024 64.3
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1277.7 1032 64.7
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1276.9 1017 64.0
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1276.9 1027 64.9
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1276.2 1028 64.6
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1275.0 1014 65.0
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1274.6 1013 64.9
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1274.6 1030 64.0
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1273.8 1016 64.9
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1272.7 1019 63.6
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1272.7 1020 64.7
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1272.3 1015 64.9
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1271.9 1015 65.2
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1271.5 1019 64.8
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1271.1 1036 64.4
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1270.4 1023 64.4
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1269.6 1043 63.5
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1268.8 1023 64.4
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 0.0e+00 1267.3 729 87.8
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1265.8 1026 63.5
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 0.0e+00 1265.8 730 87.5
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1265.0 1017 64.5
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1263.4 1020 63.8
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1262.7 1015 63.9
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1260.0 1029 63.6
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1260.0 1029 64.2
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1259.6 1039 62.5
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1259.2 1025 64.0
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1258.4 1023 64.0
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1258.4 1024 63.6
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1258.0 1031 62.7
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1258.0 1042 63.7
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1257.3 1032 63.9
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1256.5 1045 63.6
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1255.0 1069 61.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1253.4 1021 63.7
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1253.0 1030 63.7
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1252.3 1036 62.8
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1251.9 1032 62.2
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1251.5 1053 62.4
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1250.3 1040 62.1
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1248.8 1039 61.9
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1247.3 1029 63.5
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1246.9 1030 62.4
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1246.9 1032 63.4
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1246.5 1030 63.2
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1246.1 1033 62.9
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1246.1 1023 64.2
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1245.3 1037 63.4
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1245.0 1032 62.0
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1245.0 1030 62.3
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1244.6 1050 62.8
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1243.4 1032 62.7
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1243.4 1012 63.7
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1243.0 1026 63.2
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1240.3 1037 63.2
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1240.3 1018 63.0
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1237.6 1034 62.5
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1237.6 1031 62.5
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1237.6 1034 62.5
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1237.6 1035 61.9
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1237.6 1017 63.6
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1236.9 1042 62.3
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1236.9 1042 62.3
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1234.2 1029 63.6
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1234.2 1023 63.0
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1233.8 1032 63.1
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1232.6 1017 62.5
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1231.9 1027 62.5
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1231.1 1036 63.3
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1227.2 1053 62.4
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1221.8 1034 62.2
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1221.8 1022 63.0
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1220.7 1024 62.8
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1220.7 1035 62.1
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1217.2 1028 62.5
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1216.4 1028 62.5
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1212.2 1055 60.8
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1206.0 1134 57.7
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1205.3 1016 61.9
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1204.9 1069 60.3
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1202.2 1032 62.2
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1202.2 1072 60.0
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1192.2 1014 60.9
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1181.8 1039 60.8
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1172.9 1031 60.5
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1150.6 825 69.8
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1142.1 1014 60.2
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1140.9 929 63.2
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1100.9 1008 59.4
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1083.6 956 58.8
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1080.5 1019 57.7
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 1.7e-308 1062.8 1023 57.4
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 8.6e-308 1060.4 1007 56.3
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 2.0e-304 1049.3 1014 56.7
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 1.8e-302 1042.7 1029 53.6
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.6e-290 1001.9 1021 52.2
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 1.1e-289 1000.3 1018 54.4
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.1e-275 953.7 751 65.5
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 7.1e-270 934.5 1038 50.7
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.5e-254 881.7 599 73.3
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 5.6e-251 871.7 619 69.6
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 3.2e-238 829.3 1029 46.9
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.7e-237 826.2 1005 47.4
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 7.2e-230 801.6 1030 47.3
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 7.4e-227 791.6 1022 46.3
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.7e-221 772.3 555 69.4
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-212 743.8 958 45.5
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 4.0e-212 742.7 452 79.6
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.3e-196 690.3 421 79.8
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 8.6e-175 618.6 1027 39.4
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 3.3e-174 616.7 436 69.3
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 9.9e-171 605.1 1041 37.5
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.7e-170 603.2 400 72.0
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 2.3e-167 594.0 502 59.0
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.3e-162 578.2 365 77.0
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-158 565.1 480 60.8
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 2.6e-155 553.9 650 50.2
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.0e-130 472.2 322 71.4
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.7e-127 459.5 371 64.2
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.9e-123 446.4 372 59.9
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-122 445.7 368 60.6
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-122 445.7 368 60.6
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 8.2e-117 426.0 587 42.9
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.1e-113 415.6 1069 31.9
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 7.2e-105 386.3 411 52.8
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 2.6e-102 377.9 461 49.2
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 4.1e-92 344.0 560 39.5
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.2e-91 342.4 494 45.3
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 9.5e-81 306.2 194 76.3
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 4.7e-80 303.9 659 35.2
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.7e-77 294.3 204 70.6
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 1.4e-71 275.8 525 34.1
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 2.4e-60 238.4 407 37.8
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 2.4e-60 238.4 286 47.6
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 5.8e-54 217.2 132 77.3
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.3e-50 206.1 184 59.8
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 3.6e-48 198.0 294 41.8
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 5.2e-47 194.1 184 60.9
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 2.9e-45 188.3 192 49.5
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.2e-44 183.3 305 36.7
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.3e-42 178.7 397 34.0
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 6.6e-42 177.2 125 69.6
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 7.8e-35 153.7 280 35.7
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-33 148.3 221 41.2
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 3.6e-32 144.8 172 49.4
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.8e-31 142.5 251 37.8
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 3.1e-31 141.7 143 54.5
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.0e-31 140.2 214 41.6
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-28 132.9 150 49.3
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 4.3e-25 121.3 89 62.9
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.9e-20 105.9 133 45.1
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 5.6e-17 94.4 97 53.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 5.5e-12 77.8 72 48.6
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.0e-10 72.0 82 45.1
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 6.7e-10 70.9 49 65.3
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.3e-09 68.6 55 61.8
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.7e-09 67.8 202 29.2


User provided reference genes

Program Settings