Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 2.5e-178 628.6 314 100.0
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 7.0e-128 461.1 315 74.0
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 3.6e-76 289.3 297 51.2
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 3.4e-74 282.7 311 50.2
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 1.5e-69 267.3 196 63.3
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 3.6e-68 262.7 303 46.9
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 3.6e-68 262.7 301 47.5
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 8.1e-68 261.5 302 46.4
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 1.4e-67 260.8 308 48.7
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 2.6e-66 256.5 254 51.6
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 4.4e-66 255.8 312 47.8
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 4.4e-66 255.8 301 46.8
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 4.4e-66 255.8 300 47.0
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 2.4e-64 250.0 299 45.2
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 3.2e-64 249.6 275 47.6
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 5.4e-64 248.8 316 43.7
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 7.1e-64 248.4 219 54.8
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 2.1e-63 246.9 314 44.3
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 2.7e-63 246.5 302 46.0
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 7.8e-63 245.0 294 46.3
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 1.0e-62 244.6 261 50.6
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 1.0e-62 244.6 307 45.0
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 1.7e-62 243.8 298 45.6
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 3.9e-62 242.7 264 48.5
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 6.6e-62 241.9 298 45.0
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 1.1e-61 241.1 285 46.0
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 3.3e-61 239.6 297 45.1
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 5.6e-61 238.8 197 57.4
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 5.6e-61 238.8 299 45.5
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 9.6e-61 238.0 298 44.6
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 9.6e-61 238.0 307 42.7
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 1.6e-60 237.3 262 47.3
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 4.8e-60 235.7 251 48.6
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 1.4e-59 234.2 304 43.4
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 1.4e-59 234.2 298 44.6
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 1.8e-59 233.8 263 49.0
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 2.4e-59 233.4 298 45.0
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 4.0e-59 232.6 301 44.2
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 5.3e-59 232.3 264 48.1
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 5.3e-59 232.3 271 46.9
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 1.2e-58 231.1 269 46.8
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 2.6e-58 229.9 293 44.7
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 2.6e-58 229.9 298 45.0
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 2.6e-58 229.9 282 45.7
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 2.6e-58 229.9 276 46.0
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 3.4e-58 229.6 262 49.2
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 4.4e-58 229.2 251 49.4
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 9.9e-58 228.0 273 45.8
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.3e-57 227.6 282 46.8
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 1.7e-57 227.3 262 45.8
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 1.7e-57 227.3 313 40.3
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 2.2e-57 226.9 299 43.5
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 2.9e-57 226.5 253 43.9
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 3.8e-57 226.1 301 43.5
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 3.8e-57 226.1 267 44.2
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 3.8e-57 226.1 262 45.8
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 6.4e-57 225.3 273 45.4
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 6.4e-57 225.3 199 54.3
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 1.1e-56 224.6 276 44.6
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 2.4e-56 223.4 304 43.4
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 3.2e-56 223.0 274 43.8
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 4.2e-56 222.6 291 44.7
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 7.1e-56 221.9 233 49.8
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 9.3e-56 221.5 197 55.3
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 2.7e-55 219.9 273 45.1
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 2.7e-55 219.9 281 44.8
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 3.5e-55 219.5 271 43.5
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 3.5e-55 219.5 259 47.9
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 6.0e-55 218.8 311 42.8
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 3.0e-54 216.5 278 46.8
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 3.0e-54 216.5 284 44.4
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 5.1e-54 215.7 303 42.6
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 5.1e-54 215.7 276 42.8
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.1e-53 214.5 311 43.4
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 1.5e-53 214.2 313 42.5
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.5e-53 214.2 313 42.5
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 1.5e-53 214.2 196 54.1
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 1.9e-53 213.8 244 48.4
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 1.9e-53 213.8 271 43.2
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 7.4e-53 211.8 236 46.2
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 7.4e-53 211.8 320 40.9
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 1.3e-52 211.1 265 45.7
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 2.1e-52 210.3 203 52.2
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 2.8e-52 209.9 204 48.0
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 3.6e-52 209.5 340 38.5
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 6.2e-52 208.8 316 41.8
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 6.2e-52 208.8 306 42.5
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 1.4e-51 207.6 195 51.8
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 3.1e-51 206.5 301 40.5
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 9.0e-51 204.9 188 51.6
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 9.9e-50 201.4 271 43.2
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 2.2e-49 200.3 214 48.1
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 2.9e-49 199.9 240 44.2
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 1.9e-48 197.2 266 42.5
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 2.4e-48 196.8 263 43.0
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 7.1e-48 195.3 196 49.5
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 9.3e-48 194.9 196 50.5
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 9.3e-48 194.9 196 49.5
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 9.3e-48 194.9 196 49.5
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 6.0e-47 192.2 197 49.2
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 1.3e-46 191.0 314 39.2
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 8.7e-46 188.3 208 46.6
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 2.5e-45 186.8 260 41.9
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 4.3e-45 186.0 260 41.9
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 3.7e-44 183.0 263 41.1
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 4.8e-44 182.6 221 43.9
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 5.3e-43 179.1 233 42.9
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 7.6e-42 175.3 231 41.6
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 1.0e-41 174.9 265 39.2
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 2.2e-41 173.7 158 51.3
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.5e-39 166.4 235 40.4
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.5e-39 166.4 231 40.7
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 3.9e-38 162.9 198 43.9
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 7.4e-37 158.7 200 41.5
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 6.3e-36 155.6 260 38.8
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.1e-29 134.8 141 50.4
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 7.4e-29 132.1 129 48.1
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 2.6e-26 123.6 115 47.8
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 8.5e-25 118.6 179 38.5
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 7.4e-21 105.5 179 33.0
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 5.3e-19 99.4 180 36.1
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 2.0e-18 97.4 139 40.3
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 8.5e-17 92.0 76 59.2
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 1.6e-15 87.8 79 55.7
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 2.2e-12 77.4 202 29.7
SEGI_25648 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 7.2e-08 62.4 123 38.2


User provided reference genes

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