Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0831100 Oryza sativa ssp. japonica HOM05D002931 ORTHO05D003273 9.7e-188 660.2 390 100.0
Zm00001eb190610 Zea mays HOM05D002931 ORTHO05D003273 4.7e-49 199.5 403 42.4
Dinv06218 Davidia involucrata HOM05D002931 ORTHO05D003273 7.3e-18 95.9 430 28.4
PSO063G4393 Papaver somniferum HOM05D002931 ORTHO05D003273 7.3e-18 95.9 398 30.2
PSO782G2514 Papaver somniferum HOM05D002931 ORTHO05D003273 9.5e-18 95.5 408 33.1
Actinidia12422 Actinidia chinensis HOM05D002931 ORTHO05D003273 5.2e-16 89.7 415 30.1
TAR629G2161 Trochodendron aralioides HOM05D002931 ORTHO05D003273 1.5e-15 88.2 450 29.1
Nn4g24879 Nelumbo nucifera HOM05D002931 ORTHO05D003273 2.6e-15 87.4 422 29.4
MBI03_g42615_MAGBIO Magnolia biondii HOM05D002931 ORTHO05D003273 4.4e-15 86.7 418 29.7
Nitab4.5_0007973g0010 Nicotiana tabacum HOM05D002931 ORTHO05D003273 5.8e-15 86.3 383 29.5
FAN04G1136 Fragaria x ananassa HOM05D002931 ORTHO05D003273 7.6e-15 85.9 264 33.3
MBI06_g12324_MAGBIO Magnolia biondii HOM05D002931 ORTHO05D003273 1.3e-14 85.1 420 27.6
QL03p041904 Quercus lobata HOM05D002931 ORTHO05D003273 2.2e-14 84.3 393 31.3
Atru.chr11.1047 Acer truncatum HOM05D002931 ORTHO05D003273 1.1e-13 82.0 417 29.7
Manes.10G063900 Manihot esculenta HOM05D002931 ORTHO05D003273 1.4e-13 81.6 265 34.7
Sabra08G0109200 Salix brachista HOM05D002931 ORTHO05D003273 1.4e-13 81.6 247 37.2
Potri.008G144200 Populus trichocarpa HOM05D002931 ORTHO05D003273 1.9e-13 81.3 267 35.6
DCAR_023511 Daucus carota HOM05D002931 ORTHO05D003273 2.4e-13 80.9 392 28.1
CSS0049784 Camellia sinensis var. sinensis HOM05D002931 ORTHO05D003273 3.2e-13 80.5 289 31.5
Dinv28150 Davidia involucrata HOM05D002931 ORTHO05D003273 3.2e-13 80.5 295 29.8
PGSC0003DMG400031374 Solanum tuberosum HOM05D002931 ORTHO05D003273 3.2e-13 80.5 400 28.5
CiPaw.06G057100 Carya illinoinensis HOM05D002931 ORTHO05D003273 4.1e-13 80.1 423 30.0
Prupe.1G342700 Prunus persica HOM05D002931 ORTHO05D003273 4.1e-13 80.1 247 34.8
Eucgr.G02557 Eucalyptus grandis HOM05D002931 ORTHO05D003273 5.4e-13 79.7 375 28.5
Sopen04g003710 Solanum pennellii HOM05D002931 ORTHO05D003273 1.6e-12 78.2 399 27.8
CDE04G2689 Ceratophyllum demersum HOM05D002931 ORTHO05D003273 2.7e-12 77.4 375 26.7
PGR031G0955 Punica granatum HOM05D002931 ORTHO05D003273 2.7e-12 77.4 267 33.7
vmacro10786 Vaccinium macrocarpon HOM05D002931 ORTHO05D003273 2.7e-12 77.4 392 30.6
MD16G1008200 Malus domestica HOM05D002931 ORTHO05D003273 3.5e-12 77.0 379 27.7
Os04g0671800 Oryza sativa ssp. japonica HOM05D002931 ORTHO05D003273 3.5e-12 77.0 402 28.4
RcHm_v2.0_Chr7g0176801 Rosa chinensis HOM05D002931 ORTHO05D003273 3.5e-12 77.0 401 30.2
ATR0618G305 Amborella trichopoda HOM05D002931 ORTHO05D003273 6.0e-12 76.3 420 29.0
Nn3g18713 Nelumbo nucifera HOM05D002931 ORTHO05D003273 6.0e-12 76.3 249 31.7
Potri.010G098200 Populus trichocarpa HOM05D002931 ORTHO05D003273 7.8e-12 75.9 235 35.3
CANSAT64G0742 Cannabis sativa HOM05D002931 ORTHO05D003273 1.0e-11 75.5 386 29.0
FvH4_5g18690 Fragaria vesca HOM05D002931 ORTHO05D003273 1.0e-11 75.5 252 33.3
Cfa021253 Carpinus fangiana HOM05D002931 ORTHO05D003273 1.3e-11 75.1 401 28.9
FAN08G0794 Fragaria x ananassa HOM05D002931 ORTHO05D003273 1.3e-11 75.1 273 31.5
Lj6C725G8 Lonicera japonica HOM05D002931 ORTHO05D003273 1.3e-11 75.1 250 32.4
Solyc04g008550.4 Solanum lycopersicum HOM05D002931 ORTHO05D003273 1.3e-11 75.1 399 28.1
Thecc.02G296000 Theobroma cacao HOM05D002931 ORTHO05D003273 1.3e-11 75.1 425 30.4
CDE02G4446 Ceratophyllum demersum HOM05D002931 ORTHO05D003273 1.7e-11 74.7 372 27.4
Peaxi162Scf00329g00939 Petunia axillaris HOM05D002931 ORTHO05D003273 1.7e-11 74.7 414 27.3
Ciclev10004417m.g Citrus clementina HOM05D002931 ORTHO05D003273 2.3e-11 74.3 283 33.2
VMungo0251G1797 Vigna mungo HOM05D002931 ORTHO05D003273 3.0e-11 73.9 375 29.3
Gorai.002G167900 Gossypium raimondii HOM05D002931 ORTHO05D003273 5.1e-11 73.2 353 31.4
Aqoxy3G04227 Aquilegia oxysepala HOM05D002931 ORTHO05D003273 1.1e-10 72.0 419 28.4
COL.COLO4_27513 Corchorus olitorius HOM05D002931 ORTHO05D003273 1.1e-10 72.0 337 30.3
Sabra10G0070700 Salix brachista HOM05D002931 ORTHO05D003273 1.1e-10 72.0 243 35.8
FAN13G0683 Fragaria x ananassa HOM05D002931 ORTHO05D003273 1.9e-10 71.2 271 31.4
Manes.07G081000 Manihot esculenta HOM05D002931 ORTHO05D003273 1.9e-10 71.2 406 28.3
HPP92_014781 Vanilla planifolia HOM05D002931 ORTHO05D003273 1.9e-10 71.2 424 27.1
ClCG11G000800 Citrullus lanatus HOM05D002931 ORTHO05D003273 2.5e-10 70.9 389 30.1
MELO3C022593.2 Cucumis melo HOM05D002931 ORTHO05D003273 3.3e-10 70.5 384 30.2
Ah.02g120060 Amaranthus hybridus HOM05D002931 ORTHO05D003273 4.3e-10 70.1 391 27.4
arahy.Tifrunner.gnm1.ann1.QW19KK Arachis hypogaea HOM05D002931 ORTHO05D003273 5.6e-10 69.7 391 29.9
Phvul.002G186300 Phaseolus vulgaris HOM05D002931 ORTHO05D003273 2.8e-09 67.4 387 27.6
Hund04302 Selenicereus undatus HOM05D002931 ORTHO05D003273 2.8e-09 67.4 412 27.2
Lsat_1_v5_gn_4_26121 Lactuca sativa HOM05D002931 ORTHO05D003273 3.6e-09 67.0 234 30.3
Sed0006180 Sechium edule HOM05D002931 ORTHO05D003273 3.6e-09 67.0 387 27.6
arahy.Tifrunner.gnm1.ann1.FAG6RL Arachis hypogaea HOM05D002931 ORTHO05D003273 4.7e-09 66.6 391 29.7
FAN18G3391 Fragaria x ananassa HOM05D002931 ORTHO05D003273 4.7e-09 66.6 247 31.6
HPP92_020781 Vanilla planifolia HOM05D009170 ORTHO05D012011 4.7e-09 66.6 270 30.4
Duzib248G0685 Durio zibethinus HOM05D002931 ORTHO05D003273 8.1e-09 65.9 384 27.9
Nitab4.5_0007743g0010 Nicotiana tabacum HOM05D002931 ORTHO05D003273 8.1e-09 65.9 381 29.4
CsaV3_5G012550 Cucumis sativus L. HOM05D002931 ORTHO05D003273 1.4e-08 65.1 385 28.8
Nitab4.5_0000069g0600 Nicotiana tabacum HOM05D002931 ORTHO05D003273 1.4e-08 65.1 409 30.3
Solyc01g008170.3 Solanum lycopersicum HOM05D002931 ORTHO05D003273 1.4e-08 65.1 371 28.6
TWI53G0202 Tripterygium wilfordii HOM05D002931 ORTHO05D003273 1.8e-08 64.7 263 30.4
Thhalv10003749m.g Eutrema salsugineum HOM05D002931 ORTHO05D003273 6.9e-08 62.8 265 28.3
Glyma.05G135800 Glycine max HOM05D002931 ORTHO05D003273 6.9e-08 62.8 395 28.6
CAN.G458.3 Capsicum annuum HOM05D002931 ORTHO05D003273 8.9e-08 62.4 380 26.6
DCAR_030328 Daucus carota HOM05D002931 ORTHO05D003273 8.9e-08 62.4 400 28.5
HanXRQChr12g0365801 Helianthus annuus HOM05D002931 ORTHO05D003273 8.9e-08 62.4 288 27.8
Oeu006356.1 Olea europaea HOM05D002931 ORTHO05D003273 8.9e-08 62.4 387 29.5
Zm00001eb433430 Zea mays HOM05D002931 ORTHO05D003273 8.9e-08 62.4 380 28.2
MSTRG.2079 Avicennia marina HOM05D002931 ORTHO05D003273 1.5e-07 61.6 340 29.4
Duzib251G0035 Durio zibethinus HOM05D002931 ORTHO05D003273 1.5e-07 61.6 395 28.9
Ca_18209_v3 Cicer arietinum L. HOM05D002931 ORTHO05D003273 3.4e-07 60.5 394 28.9
Peaxi162Scf00097g01810 Petunia axillaris HOM05D002931 ORTHO05D003273 3.4e-07 60.5 407 27.3
Lj4g0006208 Lotus japonicus HOM05D002931 ORTHO05D003273 4.4e-07 60.1 391 28.4
ECA233G4272 Erigeron canadensis HOM05D002931 ORTHO05D003273 5.8e-07 59.7 268 32.5
SalBow2G2773 Salvia bowleyana HOM05D002931 ORTHO05D003273 1.3e-06 58.5 275 29.5
TWI53G1306 Tripterygium wilfordii HOM05D002931 ORTHO05D003273 1.3e-06 58.5 263 29.3
Sopen01g003710 Solanum pennellii HOM05D002931 ORTHO05D003273 1.7e-06 58.2 380 27.4
Gohir.D01G138200 Gossypium hirsutum HOM05D002931 ORTHO05D003273 2.9e-06 57.4 412 27.9
Migut.E00661 Erythranthe guttata HOM05D002931 ORTHO05D003273 4.9e-06 56.6 378 29.4
Oeu044053.1 Olea europaea HOM05D002931 ORTHO05D003273 4.9e-06 56.6 392 28.3
Sp2g13570 Schrenkiella parvula HOM05D002931 ORTHO05D003273 4.9e-06 56.6 267 28.5
PGSC0003DMG400016400 Solanum tuberosum HOM05D002931 ORTHO05D003273 6.4e-06 56.2 406 27.3
HanXRQChr08g0225031 Helianthus annuus HOM05D002931 ORTHO05D003273 8.4e-06 55.8 210 30.0


User provided reference genes

Program Settings