Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0581500 Oryza sativa ssp. japonica HOM05D003438 ORTHO05D004235 1.1e-173 613.2 308 100.0
Zm00001eb245370 Zea mays HOM05D003438 ORTHO05D004235 3.1e-112 409.1 277 75.1
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 5.3e-80 302.0 274 53.6
Ciclev10030492m.g Citrus clementina HOM05D003438 ORTHO05D004235 5.9e-79 298.5 270 54.1
Sabra10G0104100 Salix brachista HOM05D003438 ORTHO05D004235 3.8e-78 295.8 274 52.2
FAN17G0827 Fragaria x ananassa HOM05D003438 ORTHO05D004235 2.5e-77 293.1 282 51.1
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 3.2e-77 292.7 270 52.2
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 4.2e-77 292.4 286 49.0
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 5.5e-77 292.0 270 51.9
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 1.6e-76 290.4 277 52.0
FAN12G2600 Fragaria x ananassa HOM05D003438 ORTHO05D004235 3.6e-76 289.3 282 50.4
Prupe.1G298000 Prunus persica HOM05D003438 ORTHO05D004235 3.6e-76 289.3 269 52.8
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 4.6e-76 288.9 282 50.0
Haze_11830 Corylus avellana HOM05D003438 ORTHO05D004235 2.3e-75 286.6 275 50.2
DCAR_023734 Daucus carota HOM05D003438 ORTHO05D004235 2.3e-75 286.6 270 52.2
FvH4_4g28800 Fragaria vesca HOM05D003438 ORTHO05D004235 2.3e-75 286.6 270 52.2
CSS0014289 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 5.1e-75 285.4 272 54.0
vmacro10455 Vaccinium macrocarpon HOM05D003438 ORTHO05D004235 8.8e-75 284.6 272 53.3
GSVIVG01010139001 Vitis vinifera HOM05D003438 ORTHO05D004235 1.1e-74 284.3 274 51.1
Cfa008813 Carpinus fangiana HOM05D003438 ORTHO05D004235 2.0e-74 283.5 274 49.3
MD16G1052600 Malus domestica HOM05D003438 ORTHO05D004235 4.3e-74 282.3 269 52.4
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 5.7e-74 282.0 267 53.2
RcHm_v2.0_Chr4g0436941 Rosa chinensis HOM05D003438 ORTHO05D004235 5.7e-74 282.0 272 51.5
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 3.7e-73 279.3 278 51.8
Atru.chr11.1518 Acer truncatum HOM05D003438 ORTHO05D004235 4.8e-73 278.9 274 52.9
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 1.1e-72 277.7 272 54.0
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 1.1e-72 277.7 271 48.7
Gohir.A03G107400 Gossypium hirsutum HOM05D003438 ORTHO05D004235 1.8e-72 276.9 261 52.9
HanXRQChr16g0528311 Helianthus annuus HOM05D003438 ORTHO05D004235 1.8e-72 276.9 275 50.9
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 2.4e-72 276.6 271 52.4
Eucgr.G02402 Eucalyptus grandis HOM05D003438 ORTHO05D004235 3.1e-72 276.2 280 47.1
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 4.1e-72 275.8 275 50.9
Sp5g24020 Schrenkiella parvula HOM05D003438 ORTHO05D004235 2.0e-71 273.5 285 48.1
CDE02G1987 Ceratophyllum demersum HOM05D003438 ORTHO05D004235 3.4e-71 272.7 276 49.3
Gohir.D02G132466 Gossypium hirsutum HOM05D003438 ORTHO05D004235 3.4e-71 272.7 261 52.1
PGR119G1138 Punica granatum HOM05D003438 ORTHO05D004235 3.4e-71 272.7 262 50.8
CsaV3_5G033620 Cucumis sativus L. HOM05D003438 ORTHO05D004235 4.5e-71 272.3 277 50.2
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 5.9e-71 271.9 261 51.7
EL10Ac6g14628 Beta vulgaris HOM05D003438 ORTHO05D004235 7.7e-71 271.6 273 49.8
Carub.0002s1552 Capsella rubella HOM05D003438 ORTHO05D004235 1.0e-70 271.2 272 49.6
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 2.2e-70 270.0 277 49.8
Lj4g0011234 Lotus japonicus HOM05D003438 ORTHO05D004235 2.2e-70 270.0 275 48.0
Nn4g23588 Nelumbo nucifera HOM05D003438 ORTHO05D004235 2.2e-70 270.0 271 52.0
Thhalv10017999m.g Eutrema salsugineum HOM05D003438 ORTHO05D004235 5.0e-70 268.9 272 48.9
AT1G68890 Arabidopsis thaliana HOM05D003438 ORTHO05D004235 6.5e-70 268.5 272 47.4
Sc04g0007220 Simmondsia chinensis HOM05D003438 ORTHO05D004235 6.5e-70 268.5 271 49.4
arahy.Tifrunner.gnm1.ann1.2XHE7W Arachis hypogaea HOM05D003438 ORTHO05D004235 8.5e-70 268.1 275 48.7
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 1.1e-69 267.7 270 48.5
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 1.1e-69 267.7 293 48.5
Manes.14G092500 Manihot esculenta HOM05D003438 ORTHO05D004235 1.1e-69 267.7 287 48.4
Oeu027415.2 Olea europaea HOM05D003438 ORTHO05D004235 2.5e-69 266.5 271 52.0
CARHR061750 Cardamine hirsuta HOM05D003438 ORTHO05D004235 4.2e-69 265.8 285 47.0
Ah.12g061010 Amaranthus hybridus HOM05D003438 ORTHO05D004235 5.5e-69 265.4 271 50.2
Cc11_g11330 Coffea canephora HOM05D003438 ORTHO05D004235 2.1e-68 263.5 274 49.6
Lsat_1_v5_gn_4_21341 Lactuca sativa HOM05D003438 ORTHO05D004235 2.7e-68 263.1 299 45.8
AUR62007840 Chenopodium quinoa HOM05D003438 ORTHO05D004235 3.6e-68 262.7 265 52.1
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 3.6e-68 262.7 274 49.6
ECA234G3211 Erigeron canadensis HOM05D003438 ORTHO05D004235 6.1e-68 261.9 271 49.8
A02p15460 Brassica napus HOM05D003438 ORTHO05D004235 1.0e-67 261.2 270 47.8
BraA02t06607Z Brassica rapa HOM05D003438 ORTHO05D004235 1.0e-67 261.2 270 47.8
Aa31sc12G150 Aethionema arabicum HOM05D003438 ORTHO05D004235 1.4e-67 260.8 285 43.9
Cpa.g.sc53.1 Carica papaya HOM05D003438 ORTHO05D004235 1.4e-67 260.8 246 53.3
AUR62003034 Chenopodium quinoa HOM05D003438 ORTHO05D004235 2.3e-67 260.0 264 51.5
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 2.3e-67 260.0 276 46.7
arahy.Tifrunner.gnm1.ann1.KJ79M0 Arachis hypogaea HOM05D003438 ORTHO05D004235 3.0e-67 259.6 267 48.7
C02p25570 Brassica napus HOM05D003438 ORTHO05D004235 3.0e-67 259.6 285 46.3
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 3.9e-67 259.2 271 48.7
BolC2t08622H Brassica oleracea HOM05D003438 ORTHO05D004235 5.1e-67 258.8 263 48.3
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 5.1e-67 258.8 260 51.2
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 1.1e-66 257.7 277 47.7
THA.LOC104821983 Tarenaya hassleriana HOM05D003438 ORTHO05D004235 2.6e-66 256.5 265 48.7
CAN.G263.2 Capsicum annuum HOM05D003438 ORTHO05D004235 3.3e-66 256.1 289 47.4
Actinidia07752 Actinidia chinensis HOM05D003438 ORTHO05D004235 1.3e-65 254.2 259 49.8
Sopen04g001190 Solanum pennellii HOM05D003438 ORTHO05D004235 2.8e-65 253.1 289 46.4
PGSC0003DMG400001917 Solanum tuberosum HOM05D003438 ORTHO05D004235 2.8e-65 253.1 264 49.2
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 3.7e-65 252.7 248 52.4
SEGI_33974 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 4.8e-65 252.3 290 44.1
Nitab4.5_0000591g0100 Nicotiana tabacum HOM05D003438 ORTHO05D004235 3.1e-64 249.6 289 46.0
Nitab4.5_0000149g0230 Nicotiana tabacum HOM05D003438 ORTHO05D004235 4.1e-64 249.2 290 46.2
Peaxi162Scf00396g01316 Petunia axillaris HOM05D003438 ORTHO05D004235 7.0e-64 248.4 271 47.6
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 7.0e-64 248.4 271 48.3
Hund25139 Selenicereus undatus HOM05D003438 ORTHO05D004235 4.5e-63 245.7 231 51.5
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 1.0e-62 244.6 273 46.9
Solyc04g005200.4 Solanum lycopersicum HOM05D003438 ORTHO05D004235 2.2e-57 226.9 243 48.6
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 1.1e-56 224.6 238 49.6
MBI14_g11750_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D004235 2.5e-53 213.4 204 53.9
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 2.5e-53 213.4 310 40.3
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 4.2e-53 212.6 193 53.9
Hma1.2p1_0762F.1_g214450 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 4.2e-53 212.6 193 53.9
QL03p047145 Quercus lobata HOM05D003438 ORTHO05D004235 7.5e-50 201.8 208 49.0
ClCG05G023390 Citrullus lanatus HOM05D003438 ORTHO05D004235 9.7e-50 201.4 199 51.8
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 9.7e-50 201.4 218 47.2
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 9.7e-50 201.4 268 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 1.1e-48 198.0 223 48.9
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 1.6e-47 194.1 196 49.5
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 2.0e-47 193.7 195 48.2
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 7.7e-47 191.8 252 43.7
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 1.7e-46 190.7 250 40.8
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 1.5e-45 187.6 194 47.9
Ca_22508_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 1.2e-44 184.5 192 46.9
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 8.0e-44 181.8 193 47.2
Gohir.A13G089245 Gossypium hirsutum HOM05D003438 ORTHO05D004235 2.3e-43 180.3 172 50.0
HPP92_019404 Vanilla planifolia HOM05D003438 ORTHO05D004235 5.4e-40 169.1 179 47.5
Rhsim13G0143500 Rhododendron simsii HOM05D003438 ORTHO05D004235 6.3e-33 145.6 183 43.2
SEGI_27375 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 1.1e-32 144.8 169 43.2
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 8.6e-30 135.2 293 32.8
CBR_g48056 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-28 131.0 317 29.0
HPP92_019403 Vanilla planifolia HOM05D003438 ORTHO05D004235 6.1e-28 129.0 119 50.4
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 2.1e-20 104.0 287 28.2
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 3.1e-19 100.1 285 28.4
Nitab4.5_0002491g0050 Nicotiana tabacum HOM05D003438 ORTHO05D004235 1.1e-16 91.7 126 42.1
Lalb_Chr16g0392011 Lupinus albus HOM05D003438 ORTHO05D004235 1.4e-11 74.7 81 44.4
CAN.G1069.8 Capsicum annuum HOM05D000972 ORTHO05D007713 1.3e-09 68.2 311 25.7
Peaxi162Scf00096g00824 Petunia axillaris HOM05D000972 ORTHO05D007713 3.7e-09 66.6 289 26.0
Psat7g028040 Pisum sativum HOM05D003438 ORTHO05D004235 1.1e-08 65.1 65 49.2
PGSC0003DMG400028161 Solanum tuberosum HOM05D000972 ORTHO05D007713 3.2e-08 63.5 282 25.9
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 4.1e-08 63.2 281 23.1
Nitab4.5_0008328g0010 Nicotiana tabacum HOM05D000972 ORTHO05D007713 4.1e-08 63.2 283 25.8
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 4.1e-08 63.2 279 25.8
SMO116G0199 Selaginella moellendorffii HOM05D000972 ORTHO05D007713 5.4e-08 62.8 286 24.1
Solyc10g083270.3 Solanum lycopersicum HOM05D000972 ORTHO05D007713 7.1e-08 62.4 282 24.8
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 9.2e-08 62.0 277 26.4
Nitab4.5_0002491g0040 Nicotiana tabacum HOM05D016139 ORTHO05D014242 9.2e-08 62.0 68 42.6
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 9.2e-08 62.0 279 25.4
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 1.2e-07 61.6 279 24.0
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 1.6e-07 61.2 275 23.6
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 1.6e-07 61.2 279 23.7
Phvul.001G191800 Phaseolus vulgaris HOM05D000972 ORTHO05D007713 1.6e-07 61.2 290 23.4
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 3.5e-07 60.1 279 24.0
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 3.5e-07 60.1 279 24.0
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 3.5e-07 60.1 279 23.7
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 3.5e-07 60.1 281 23.1
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 6.0e-07 59.3 280 24.6
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 6.0e-07 59.3 279 23.3
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 6.0e-07 59.3 279 23.3
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 6.0e-07 59.3 279 23.3
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 6.0e-07 59.3 279 22.9
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 6.0e-07 59.3 279 23.3
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 7.8e-07 58.9 279 23.3
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 7.8e-07 58.9 279 23.3
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 7.8e-07 58.9 279 22.2
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 7.8e-07 58.9 279 24.0
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 7.8e-07 58.9 279 23.3
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 7.8e-07 58.9 280 22.9
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 1.7e-06 57.8 279 22.9
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 1.7e-06 57.8 279 22.9
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 1.7e-06 57.8 279 22.2
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 1.7e-06 57.8 279 23.3
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 1.7e-06 57.8 274 26.6
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 1.7e-06 57.8 279 23.3
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 1.7e-06 57.8 272 23.9
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 2.3e-06 57.4 279 22.9
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 2.3e-06 57.4 279 22.9
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 2.3e-06 57.4 279 22.6
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 2.3e-06 57.4 275 23.6
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 2.3e-06 57.4 280 25.0
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 2.3e-06 57.4 279 23.3
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 3.0e-06 57.0 279 23.3
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 3.0e-06 57.0 279 22.9
Sc14g0001980 Simmondsia chinensis HOM05D000363 ORTHO05D000236 3.0e-06 57.0 125 31.2
Sopen10g032750 Solanum pennellii HOM05D000972 ORTHO05D007713 3.0e-06 57.0 282 24.1
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 3.0e-06 57.0 279 23.7
Ah.03g138940 Amaranthus hybridus HOM05D002734 ORTHO05D003035 3.9e-06 56.6 274 24.8
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 3.9e-06 56.6 279 22.6
CSS0004636 Camellia sinensis var. sinensis HOM05D000972 ORTHO05D007713 3.9e-06 56.6 308 24.7
Lj1g0015565 Lotus japonicus HOM05D000972 ORTHO05D007713 3.9e-06 56.6 289 23.5
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 5.1e-06 56.2 272 23.2
CSS0013615 Camellia sinensis var. sinensis HOM05D000972 ORTHO05D007713 5.1e-06 56.2 308 25.0
Zm00001eb147060 Zea mays HOM05D000972 ORTHO05D007713 5.1e-06 56.2 280 25.0
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 6.6e-06 55.8 275 22.9
Glyma.03G197700 Glycine max HOM05D000972 ORTHO05D007713 6.6e-06 55.8 289 23.2
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 6.6e-06 55.8 278 20.5


User provided reference genes

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