Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 6.0e-110 401.0 221 100.0
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 3.7e-99 365.2 201 90.0
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 8.2e-91 337.4 203 80.3
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 5.3e-90 334.7 203 79.8
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 1.5e-89 333.2 203 79.8
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.7e-88 329.7 203 78.8
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 3.8e-88 328.6 203 79.3
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.1e-87 327.0 203 75.4
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.4e-87 326.6 201 78.1
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.9e-87 326.2 201 78.6
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 5.5e-87 324.7 203 74.9
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 5.5e-87 324.7 203 74.9
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 5.5e-87 324.7 201 78.1
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 7.2e-87 324.3 203 77.3
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 7.2e-87 324.3 203 77.3
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 7.2e-87 324.3 203 76.8
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 7.2e-87 324.3 201 78.6
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 9.3e-87 323.9 201 78.1
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 9.3e-87 323.9 201 78.1
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.2e-86 323.6 203 76.8
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 1.2e-86 323.6 201 76.6
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.6e-86 323.2 203 76.8
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.1e-86 322.8 201 78.1
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.1e-86 322.8 201 77.1
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 2.7e-86 322.4 203 76.4
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.7e-86 322.4 201 76.6
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 6.1e-86 321.2 201 77.1
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 6.1e-86 321.2 201 77.1
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 6.1e-86 321.2 201 77.1
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 6.1e-86 321.2 201 77.1
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 6.1e-86 321.2 203 76.4
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 6.1e-86 321.2 201 77.1
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 6.1e-86 321.2 203 75.4
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 7.9e-86 320.9 203 75.9
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 7.9e-86 320.9 201 76.6
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.0e-85 320.5 201 76.6
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.3e-85 320.1 201 76.6
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 1.3e-85 320.1 201 77.1
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 1.8e-85 319.7 201 77.1
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 3.0e-85 318.9 201 74.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.9e-85 318.5 203 75.4
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 3.9e-85 318.5 203 76.8
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 5.1e-85 318.2 203 75.9
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 6.7e-85 317.8 203 75.9
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 6.7e-85 317.8 203 75.4
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 1.1e-84 317.0 203 75.4
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.5e-84 316.6 203 74.4
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 1.9e-84 316.2 201 74.6
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.9e-84 316.2 201 74.6
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.5e-84 315.8 203 74.9
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 4.3e-84 315.1 201 76.6
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.3e-84 315.1 203 74.9
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.3e-84 315.1 203 74.9
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 7.4e-84 314.3 201 75.6
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 9.7e-84 313.9 201 76.1
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 2.2e-83 312.8 203 74.9
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.2e-83 312.8 201 74.1
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 2.8e-83 312.4 203 73.9
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 4.8e-83 311.6 203 72.9
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 4.8e-83 311.6 203 73.4
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 4.8e-83 311.6 196 77.6
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 4.8e-83 311.6 203 73.4
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 6.3e-83 311.2 203 73.4
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 6.3e-83 311.2 203 72.9
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 6.3e-83 311.2 203 75.9
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 6.3e-83 311.2 203 74.4
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 8.2e-83 310.8 205 74.6
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 8.2e-83 310.8 203 73.4
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 8.2e-83 310.8 201 74.1
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.4e-82 310.1 203 73.4
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 1.4e-82 310.1 203 73.9
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.8e-82 309.7 201 74.1
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 3.1e-82 308.9 203 73.4
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 3.1e-82 308.9 203 73.4
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 4.1e-82 308.5 206 73.3
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 4.1e-82 308.5 203 73.4
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 9.0e-82 307.4 209 72.7
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.5e-81 306.6 203 73.4
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 4.5e-81 305.1 204 72.5
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 1.0e-80 303.9 201 71.6
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.0e-80 303.9 192 77.1
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 1.7e-80 303.1 192 76.6
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 5.0e-80 301.6 201 71.6
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 6.5e-80 301.2 190 76.8
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.1e-79 300.4 201 71.1
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 1.2e-78 297.0 201 70.6
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 2.7e-78 295.8 203 70.9
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 6.1e-78 294.7 192 74.0
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 7.9e-78 294.3 192 74.0
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 1.0e-77 293.9 201 73.1
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 8.8e-77 290.8 191 73.3
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 1.1e-76 290.4 202 70.3
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 2.0e-76 289.7 202 70.3
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 2.0e-76 289.7 202 70.3
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 2.0e-76 289.7 192 74.0
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 2.6e-76 289.3 202 70.3
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 2.6e-76 289.3 202 70.3
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 5.7e-76 288.1 279 56.6
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 2.2e-75 286.2 202 69.8
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 1.4e-74 283.5 203 68.0
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 4.1e-74 282.0 203 67.5
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 2.6e-73 279.3 203 67.0
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 4.5e-73 278.5 260 55.4
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 6.5e-72 274.6 194 68.6
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.9e-71 273.1 203 67.5
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 9.4e-71 270.8 201 65.2
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 3.3e-68 262.3 185 69.7
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 3.7e-67 258.8 201 61.7
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 6.3e-67 258.1 201 64.7
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.1e-66 257.3 164 73.8
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 2.4e-66 256.1 185 70.8
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 7.0e-66 254.6 205 57.6
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 2.6e-65 252.7 201 61.2
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.3e-64 250.4 173 70.5
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.9e-63 246.5 159 73.0
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 5.2e-61 238.4 201 58.2
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 6.8e-53 211.5 201 56.2
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 2.0e-52 209.9 139 71.2
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.0e-48 197.6 130 72.3
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.7e-48 196.8 203 52.7
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 6.1e-46 188.3 130 70.0
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 3.4e-44 182.6 141 64.5
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.9e-43 178.7 162 54.3
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.1e-42 177.6 161 57.8
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 2.7e-41 172.9 119 69.7
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 1.3e-40 170.6 110 70.9
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-39 167.5 203 46.3
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.0e-32 144.4 124 54.8
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 3.4e-28 129.4 203 40.4
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 3.3e-23 112.8 76 71.1
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.2e-22 110.9 69 75.4
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 2.7e-17 93.2 63 66.7
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.0e-16 89.7 46 87.0
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 3.6e-14 82.8 48 79.2
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 6.8e-13 78.6 56 64.3
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 3.4e-12 76.3 53 69.8
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 2.9e-11 73.2 88 51.1
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 7.3e-07 58.5 51 52.9
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 1.2e-06 57.8 34 79.4
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 6.2e-06 55.5 34 76.5


User provided reference genes

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