Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0176000 Oryza sativa ssp. japonica HOM05D001117 ORTHO05D000930 2.0e-89 332.8 223 100.0
Zm00001eb233530 Zea mays HOM05D001117 ORTHO05D000930 3.6e-46 189.1 221 65.2
Os06g0661200 Oryza sativa ssp. japonica HOM05D001117 ORTHO05D000930 1.0e-32 144.4 222 56.3
Zm00001eb389190 Zea mays HOM05D001117 ORTHO05D000930 9.6e-31 137.9 221 47.1
Ciclev10026364m.g Citrus clementina HOM05D001117 ORTHO05D000930 1.3e-11 74.3 244 28.3
FAN05G3317 Fragaria x ananassa HOM05D001117 ORTHO05D000930 5.5e-10 68.9 269 28.3
RcHm_v2.0_Chr2g0149701 Rosa chinensis HOM05D001117 ORTHO05D000930 5.5e-10 68.9 269 31.2
TAR625G0819 Trochodendron aralioides HOM05D001117 ORTHO05D000930 7.1e-10 68.6 261 25.7
FvH4_6g37140 Fragaria vesca HOM05D001117 ORTHO05D000930 1.2e-09 67.8 269 28.6
SalBow6G1297 Salvia bowleyana HOM05D001117 ORTHO05D000930 1.2e-09 67.8 241 34.4
Oeu031650.1 Olea europaea HOM05D001117 ORTHO05D000930 1.6e-09 67.4 253 28.5
FAN09G1618 Fragaria x ananassa HOM05D001117 ORTHO05D000930 2.1e-09 67.0 260 35.8
Aa31LG8G8450 Aethionema arabicum HOM05D001117 ORTHO05D000930 6.0e-09 65.5 42 71.4
FAN02G0164 Fragaria x ananassa HOM05D001117 ORTHO05D000930 7.9e-09 65.1 269 27.5
Sabra10G0195900 Salix brachista HOM05D001117 ORTHO05D000930 7.9e-09 65.1 246 26.8
AL3G35090 Arabidopsis lyrata HOM05D001117 ORTHO05D000930 3.0e-08 63.2 233 35.2
Dinv20347 Davidia involucrata HOM05D001117 ORTHO05D000930 3.9e-08 62.8 285 27.0
AL3G36050 Arabidopsis lyrata HOM05D001117 ORTHO05D000930 5.1e-08 62.4 42 73.8
AL3G36070 Arabidopsis lyrata HOM05D001117 ORTHO05D000930 5.1e-08 62.4 42 73.8
AUR62025650 Chenopodium quinoa HOM05D001117 ORTHO05D000930 5.1e-08 62.4 257 31.5
Thhalv10021966m.g Eutrema salsugineum HOM05D001117 ORTHO05D000930 5.1e-08 62.4 42 73.8
Sp3g19860 Schrenkiella parvula HOM05D001117 ORTHO05D000930 5.1e-08 62.4 42 73.8
BcaC05g28254 Brassica carinata HOM05D001117 ORTHO05D000930 6.7e-08 62.0 229 34.1
SGA_v2.0_scaffold71G24000 Striga asiatica HOM05D001117 ORTHO05D000930 6.7e-08 62.0 242 28.5
BcaB06g26185 Brassica carinata HOM05D001117 ORTHO05D000930 1.1e-07 61.2 233 27.9
BcaC09g49131 Brassica carinata HOM05D001117 ORTHO05D000930 1.1e-07 61.2 42 71.4
BcaC09g49132 Brassica carinata HOM05D001117 ORTHO05D000930 1.1e-07 61.2 42 71.4
A01p33090 Brassica napus HOM05D001117 ORTHO05D000930 1.1e-07 61.2 42 71.4
C01p42320 Brassica napus HOM05D001117 ORTHO05D000930 1.1e-07 61.2 42 71.4
C05p42670 Brassica napus HOM05D001117 ORTHO05D000930 1.1e-07 61.2 229 34.1
BolC1t04187H Brassica oleracea HOM05D001117 ORTHO05D000930 1.1e-07 61.2 42 71.4
BolC5t32986H Brassica oleracea HOM05D001117 ORTHO05D000930 1.1e-07 61.2 229 34.1
BraA01t03432Z Brassica rapa HOM05D001117 ORTHO05D000930 1.1e-07 61.2 42 71.4
Carub.0003s2196 Capsella rubella HOM05D001117 ORTHO05D000930 1.1e-07 61.2 42 73.8
AUR62001354 Chenopodium quinoa HOM05D001117 ORTHO05D000930 1.1e-07 61.2 259 34.4
Lj3g0018576 Lotus japonicus HOM05D001117 ORTHO05D000930 1.1e-07 61.2 251 30.3
Pp3c11_6300 Physcomitrium patens HOM05D001117 ORTHO05D000930 1.1e-07 61.2 40 62.5
EL10Ac7g18174 Beta vulgaris HOM05D001117 ORTHO05D000930 1.5e-07 60.8 249 29.3
MBI16_g05841_MAGBIO Magnolia biondii HOM05D001117 ORTHO05D000930 1.5e-07 60.8 268 27.6
Pp3c7_25550 Physcomitrium patens HOM05D001117 ORTHO05D000930 1.5e-07 60.8 39 66.7
Oeu001812.1 Olea europaea HOM05D001117 ORTHO05D000930 2.5e-07 60.1 40 67.5
AT3G21890 Arabidopsis thaliana HOM05D001117 ORTHO05D000930 3.3e-07 59.7 42 71.4
CARHR097010 Cardamine hirsuta HOM05D001117 ORTHO05D000930 3.3e-07 59.7 40 67.5
Thhalv10021479m.g Eutrema salsugineum HOM05D001117 ORTHO05D000930 3.3e-07 59.7 226 29.2
Hma1.2p1_0517F.1_g170690 Hydrangea macrophylla HOM05D001117 ORTHO05D000930 3.3e-07 59.7 42 64.3
Oeu044523.1 Olea europaea HOM05D001117 ORTHO05D000930 3.3e-07 59.7 41 63.4
Pp3c2_30120 Physcomitrium patens HOM05D001117 ORTHO05D000930 3.3e-07 59.7 39 64.1
TAR626G0811 Trochodendron aralioides HOM05D001117 ORTHO05D000930 3.3e-07 59.7 40 65.0
Aa31LG9G2180 Aethionema arabicum HOM05D001117 ORTHO05D000930 4.3e-07 59.3 42 69.0
arahy.Tifrunner.gnm1.ann1.QUP41J Arachis hypogaea HOM05D001117 ORTHO05D000930 4.3e-07 59.3 42 64.3
arahy.Tifrunner.gnm1.ann1.Y5JHRV Arachis hypogaea HOM05D001117 ORTHO05D000930 4.3e-07 59.3 42 64.3
QL08p017105 Quercus lobata HOM05D001117 ORTHO05D000930 4.3e-07 59.3 43 60.5
BcaB04g19145 Brassica carinata HOM05D001117 ORTHO05D000930 5.7e-07 58.9 40 67.5
Carub.0007s2670 Capsella rubella HOM05D001117 ORTHO05D000930 5.7e-07 58.9 39 69.2
Nn8g40727 Nelumbo nucifera HOM05D001117 ORTHO05D000930 5.7e-07 58.9 273 24.9
THA.LOC104809280 Tarenaya hassleriana HOM05D001117 ORTHO05D000930 5.7e-07 58.9 39 64.1
MSTRG.11588 Avicennia marina HOM05D001117 ORTHO05D000930 7.4e-07 58.5 42 61.9
PSO063G7143 Papaver somniferum HOM05D001117 ORTHO05D000930 7.4e-07 58.5 42 59.5
TWI12G0590 Tripterygium wilfordii HOM05D001117 ORTHO05D000930 7.4e-07 58.5 42 59.5
TWI38G2058 Tripterygium wilfordii HOM05D001117 ORTHO05D000930 7.4e-07 58.5 43 60.5
TWI39G0308 Tripterygium wilfordii HOM05D001117 ORTHO05D000930 7.4e-07 58.5 43 60.5
Zm00001eb413010 Zea mays HOM05D001117 ORTHO05D000930 7.4e-07 58.5 45 60.0
BcaB04g20553 Brassica carinata HOM05D001117 ORTHO05D000930 9.6e-07 58.2 42 69.0
PSO170G5160 Papaver somniferum HOM05D001117 ORTHO05D000930 9.6e-07 58.2 42 59.5
Pp3c1_6980 Physcomitrium patens HOM05D001117 ORTHO05D000930 9.6e-07 58.2 39 64.1
Rhsim06G0157700 Rhododendron simsii HOM05D001117 ORTHO05D000930 9.6e-07 58.2 39 66.7
Sc12g0002400 Simmondsia chinensis HOM05D001117 ORTHO05D000930 9.6e-07 58.2 44 65.9
SGA_v2.0_scaffold122G33279 Striga asiatica HOM05D001117 ORTHO05D000930 9.6e-07 58.2 40 62.5
Zm00001eb170920 Zea mays HOM05D001051 ORTHO05D000886 9.6e-07 58.2 57 50.9
Aqoxy1G03739 Aquilegia oxysepala HOM05D001117 ORTHO05D000930 1.3e-06 57.8 39 66.7
AT3G21150 Arabidopsis thaliana HOM05D001117 ORTHO05D000930 1.3e-06 57.8 231 33.8
MSTRG.10885 Avicennia marina HOM05D001117 ORTHO05D000930 1.3e-06 57.8 225 27.6
BcaC05g28119 Brassica carinata HOM05D001117 ORTHO05D000930 1.3e-06 57.8 42 71.4
BcaC09g50207 Brassica carinata HOM05D001117 ORTHO05D000930 1.3e-06 57.8 40 67.5
A01p22290 Brassica napus HOM05D001117 ORTHO05D000930 1.3e-06 57.8 40 67.5
C01p27830 Brassica napus HOM05D001117 ORTHO05D000930 1.3e-06 57.8 40 67.5
C03p51480 Brassica napus HOM05D001117 ORTHO05D000930 1.3e-06 57.8 42 61.9
C05p41490 Brassica napus HOM05D001117 ORTHO05D000930 1.3e-06 57.8 42 71.4
BolC1t02717H Brassica oleracea HOM05D001117 ORTHO05D000930 1.3e-06 57.8 40 67.5
BolC5t32888H Brassica oleracea HOM05D001117 ORTHO05D000930 1.3e-06 57.8 42 71.4
BraA01t02145Z Brassica rapa HOM05D001117 ORTHO05D000930 1.3e-06 57.8 40 67.5
BraA03t13360Z Brassica rapa HOM05D001117 ORTHO05D000930 1.3e-06 57.8 42 61.9
CARHR097850 Cardamine hirsuta HOM05D001117 ORTHO05D000930 1.3e-06 57.8 42 69.0
CiPaw.01G090100 Carya illinoinensis HOM05D001117 ORTHO05D000930 1.3e-06 57.8 272 25.7
Phvul.005G113200 Phaseolus vulgaris HOM05D001117 ORTHO05D000930 1.3e-06 57.8 49 57.1
Prupe.4G192700 Prunus persica HOM05D001117 ORTHO05D000930 1.3e-06 57.8 42 61.9
PGR102G1110 Punica granatum HOM05D001117 ORTHO05D000930 1.3e-06 57.8 42 61.9
TPR.G15694 Trifolium pratense HOM05D001117 ORTHO05D000930 1.3e-06 57.8 42 61.9
AL7G40380 Arabidopsis lyrata HOM05D001117 ORTHO05D000930 1.6e-06 57.4 40 67.5
AT4G15248 Arabidopsis thaliana HOM05D001117 ORTHO05D000930 1.6e-06 57.4 40 67.5
A03p42060 Brassica napus HOM05D001117 ORTHO05D000930 1.6e-06 57.4 40 65.0
Cfa014442 Carpinus fangiana HOM05D001117 ORTHO05D000930 1.6e-06 57.4 52 55.8
Cfa020485 Carpinus fangiana HOM05D001117 ORTHO05D000930 1.6e-06 57.4 43 60.5
Haze_09554 Corylus avellana HOM05D001117 ORTHO05D000930 1.6e-06 57.4 43 60.5
MELO3C007337.2 Cucumis melo HOM05D001117 ORTHO05D000930 1.6e-06 57.4 39 66.7
Duzib268G1363 Durio zibethinus HOM05D001117 ORTHO05D000930 1.6e-06 57.4 42 59.5
Os08g0178800 Oryza sativa ssp. japonica HOM05D001117 ORTHO05D000930 1.6e-06 57.4 42 61.9
Potri.017G039400 Populus trichocarpa HOM05D001117 ORTHO05D000930 1.6e-06 57.4 42 64.3
QL05p083841 Quercus lobata HOM05D001117 ORTHO05D000930 1.6e-06 57.4 42 61.9
Rhsim04G0056900 Rhododendron simsii HOM05D001117 ORTHO05D000930 1.6e-06 57.4 39 66.7
Sabra07G0098100 Salix brachista HOM05D001117 ORTHO05D000930 1.6e-06 57.4 39 66.7
Zm00001eb171840 Zea mays HOM05D001117 ORTHO05D000930 1.6e-06 57.4 42 61.9
Cpa.g.sc34.54 Carica papaya HOM05D001117 ORTHO05D000930 2.1e-06 57.0 39 61.5
CiPaw.03G163400 Carya illinoinensis HOM05D001117 ORTHO05D000930 2.1e-06 57.0 39 66.7
Haze_12903 Corylus avellana HOM05D001117 ORTHO05D000930 2.1e-06 57.0 43 62.8
Gorai.002G077700 Gossypium raimondii HOM05D001117 ORTHO05D000930 2.1e-06 57.0 42 59.5
Manes.15G081202 Manihot esculenta HOM05D001117 ORTHO05D000930 2.1e-06 57.0 43 58.1
Peaxi162Scf00007g10129 Petunia axillaris HOM05D001117 ORTHO05D000930 2.1e-06 57.0 44 61.4
Phvul.008G254400 Phaseolus vulgaris HOM05D001117 ORTHO05D000930 2.1e-06 57.0 45 57.8
Potri.010G251800 Populus trichocarpa HOM05D001117 ORTHO05D000930 2.1e-06 57.0 254 26.8
QL08p033897 Quercus lobata HOM05D001117 ORTHO05D000930 2.1e-06 57.0 43 60.5
Sp7g13460 Schrenkiella parvula HOM05D001117 ORTHO05D000930 2.1e-06 57.0 42 64.3
SMO133G0012 Selaginella moellendorffii HOM05D001117 ORTHO05D000930 2.1e-06 57.0 39 64.1
Aa31LG8G7850 Aethionema arabicum HOM05D001117 ORTHO05D000930 2.8e-06 56.6 224 26.8
BraA05t21646Z Brassica rapa HOM05D001117 ORTHO05D000930 2.8e-06 56.6 227 32.6
Cfa002141 Carpinus fangiana HOM05D001117 ORTHO05D000930 2.8e-06 56.6 265 26.4
Gohir.A04G024900 Gossypium hirsutum HOM05D001117 ORTHO05D000930 2.8e-06 56.6 42 59.5
Gohir.D05G362500 Gossypium hirsutum HOM05D001117 ORTHO05D000930 2.8e-06 56.6 42 59.5
Gorai.009G430000 Gossypium raimondii HOM05D001117 ORTHO05D000930 2.8e-06 56.6 42 59.5
THA.LOC104816867 Tarenaya hassleriana HOM05D001117 ORTHO05D000930 2.8e-06 56.6 53 54.7
Ah.14g088770 Amaranthus hybridus HOM05D001117 ORTHO05D000930 3.7e-06 56.2 42 54.8
BcaNung00293 Brassica carinata HOM05D001117 ORTHO05D000930 3.7e-06 56.2 40 65.0
COL.COLO4_31183 Corchorus olitorius HOM05D001117 ORTHO05D000930 3.7e-06 56.2 249 28.1
Glyma.07G020400 Glycine max HOM05D001117 ORTHO05D000930 3.7e-06 56.2 42 59.5
THA.LOC104799898 Tarenaya hassleriana HOM05D001117 ORTHO05D000930 3.7e-06 56.2 39 61.5
THA.LOC104821750 Tarenaya hassleriana HOM05D001117 ORTHO05D000930 3.7e-06 56.2 42 64.3
TWI36G0911 Tripterygium wilfordii HOM05D001117 ORTHO05D000930 3.7e-06 56.2 39 66.7
unitig_52.g17336 Utricularia gibba HOM05D001117 ORTHO05D000930 3.7e-06 56.2 42 61.9
HPP92_010077 Vanilla planifolia HOM05D001117 ORTHO05D000930 3.7e-06 56.2 39 64.1
GSVIVG01000440001 Vitis vinifera HOM05D001117 ORTHO05D000930 3.7e-06 56.2 43 60.5
Ah.09g236270 Amaranthus hybridus HOM05D001117 ORTHO05D000930 4.8e-06 55.8 39 56.4
Ah.09g236520 Amaranthus hybridus HOM05D001117 ORTHO05D000930 4.8e-06 55.8 39 56.4
A05p27570 Brassica napus HOM05D001117 ORTHO05D000930 4.8e-06 55.8 227 32.6
COL.COLO4_09503 Corchorus olitorius HOM05D001117 ORTHO05D000930 4.8e-06 55.8 42 59.5
DCAR_019775 Daucus carota HOM05D001117 ORTHO05D000930 4.8e-06 55.8 39 64.1
Peaxi162Scf00007g01730 Petunia axillaris HOM05D001117 ORTHO05D000930 4.8e-06 55.8 42 59.5
Pp3c17_6790 Physcomitrium patens HOM05D000707 ORTHO05D001462 4.8e-06 55.8 45 64.4
Sp7g25230 Schrenkiella parvula HOM05D001117 ORTHO05D000930 4.8e-06 55.8 42 57.1
Solyc07g052620.1 Solanum lycopersicum HOM05D001117 ORTHO05D000930 4.8e-06 55.8 39 64.1
Sopen07g026230 Solanum pennellii HOM05D001117 ORTHO05D000930 4.8e-06 55.8 39 64.1
PGSC0003DMG400026169 Solanum tuberosum HOM05D001117 ORTHO05D000930 4.8e-06 55.8 39 64.1
SGA_v2.0_scaffold34G13898 Striga asiatica HOM05D001117 ORTHO05D000930 4.8e-06 55.8 42 61.9
CAN.G640.14 Capsicum annuum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 59.5
CARHR234960 Cardamine hirsuta HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 57.1
Cc05_g05180 Coffea canephora HOM05D001117 ORTHO05D000930 6.3e-06 55.5 43 60.5
Thhalv10014573m.g Eutrema salsugineum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 39 61.5
Hma1.2p1_0613F.1_g189230 Hydrangea macrophylla HOM05D001117 ORTHO05D000930 6.3e-06 55.5 41 63.4
Manes.13G073800 Manihot esculenta HOM05D001117 ORTHO05D000930 6.3e-06 55.5 52 55.8
Nitab4.5_0001680g0030 Nicotiana tabacum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 37 64.9
Nitab4.5_0002949g0020 Nicotiana tabacum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 37 64.9
Nitab4.5_0004360g0050 Nicotiana tabacum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 59.5
Nitab4.5_0004625g0020 Nicotiana tabacum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 59.5
Sed0001274 Sechium edule HOM05D001117 ORTHO05D000930 6.3e-06 55.5 64 48.4
Solyc06g063280.1 Solanum lycopersicum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 61.9
Solyc07g053140.3 Solanum lycopersicum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 59.5
Sopen06g022740 Solanum pennellii HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 61.9
Sopen07g026690 Solanum pennellii HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 59.5
PGSC0003DMG400026181 Solanum tuberosum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 59.5
PGSC0003DMG400026515 Solanum tuberosum HOM05D001117 ORTHO05D000930 6.3e-06 55.5 42 61.9
Aa31LG5G10190 Aethionema arabicum HOM05D001117 ORTHO05D000930 8.2e-06 55.1 45 55.6
Aqoxy7G02853 Aquilegia oxysepala HOM05D001117 ORTHO05D000930 8.2e-06 55.1 58 48.3
AL7G25510 Arabidopsis lyrata HOM05D001117 ORTHO05D000930 8.2e-06 55.1 42 57.1
AT4G27310 Arabidopsis thaliana HOM05D001117 ORTHO05D000930 8.2e-06 55.1 42 57.1
Carub.0007s1357 Capsella rubella HOM05D001117 ORTHO05D000930 8.2e-06 55.1 42 57.1
Carub.0008s1476 Capsella rubella HOM05D001117 ORTHO05D000930 8.2e-06 55.1 43 58.1
CAN.G80.16 Capsicum annuum HOM05D001117 ORTHO05D000930 8.2e-06 55.1 39 61.5
MD09G1104600 Malus domestica HOM05D001117 ORTHO05D000930 8.2e-06 55.1 39 64.1
Mapoly0049s0030 Marchantia polymorpha HOM05D001117 ORTHO05D000930 8.2e-06 55.1 51 52.9
Nitab4.5_0002354g0010 Nicotiana tabacum HOM05D001117 ORTHO05D000930 8.2e-06 55.1 39 64.1
Sed0025411 Sechium edule HOM05D001117 ORTHO05D000930 8.2e-06 55.1 39 61.5


User provided reference genes

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