Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0147300 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.1e-95 352.4 186 100.0
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.5e-85 318.9 170 98.2
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 5.1e-70 268.1 168 83.9
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 3.1e-67 258.8 162 84.0
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 1.0e-38 164.1 172 55.8
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 1.0e-38 164.1 172 55.8
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 4.0e-38 162.2 170 56.5
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 8.8e-38 161.0 172 56.4
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.2e-37 160.6 171 55.6
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 2.0e-37 159.8 167 58.1
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 3.3e-37 159.1 172 55.2
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 4.4e-37 158.7 172 56.4
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 4.4e-37 158.7 172 56.4
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 4.4e-37 158.7 172 55.8
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 5.7e-37 158.3 171 56.1
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 7.5e-37 157.9 176 51.7
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 7.5e-37 157.9 170 55.3
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 7.5e-37 157.9 172 55.8
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 9.7e-37 157.5 173 54.3
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.3e-36 157.1 171 54.4
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 1.3e-36 157.1 169 56.2
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 1.3e-36 157.1 171 54.4
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 1.3e-36 157.1 170 54.7
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 1.3e-36 157.1 170 54.7
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.3e-36 157.1 184 51.6
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 4.8e-36 155.2 172 54.1
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 6.3e-36 154.8 172 52.3
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 6.3e-36 154.8 161 57.8
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 8.3e-36 154.5 169 53.8
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 1.4e-35 153.7 171 55.6
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 1.4e-35 153.7 162 57.4
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 1.8e-35 153.3 161 57.1
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 2.4e-35 152.9 172 54.1
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 2.4e-35 152.9 172 54.1
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 4.1e-35 152.1 171 53.2
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 4.1e-35 152.1 174 54.0
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 4.1e-35 152.1 174 51.1
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 4.1e-35 152.1 168 54.2
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 1.2e-34 150.6 171 54.4
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.6e-34 150.2 171 51.5
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 2.0e-34 149.8 169 55.0
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.7e-34 149.4 173 52.6
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.7e-34 149.4 173 52.6
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 5.9e-34 148.3 159 57.2
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 7.7e-34 147.9 172 51.7
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 1.3e-33 147.1 171 55.0
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 1.3e-33 147.1 171 55.0
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 1.3e-33 147.1 165 53.9
CSS0033238 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.2e-33 146.4 174 51.7
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 2.2e-33 146.4 168 53.0
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 2.2e-33 146.4 171 53.8
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 2.2e-33 146.4 169 51.5
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 2.9e-33 146.0 167 53.3
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 2.9e-33 146.0 172 54.1
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.8e-33 145.6 171 53.8
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.8e-33 145.6 167 53.9
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.5e-33 144.8 167 52.7
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 8.5e-33 144.4 168 53.0
Dinv04117 Davidia involucrata HOM05D003084 ORTHO05D003580 8.5e-33 144.4 174 50.0
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.1e-32 144.1 168 53.0
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 1.1e-32 144.1 158 54.4
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.1e-32 144.1 169 50.3
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 1.5e-32 143.7 172 50.6
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.5e-32 143.7 170 53.5
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.5e-32 143.7 167 53.3
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 1.5e-32 143.7 160 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 2.5e-32 142.9 167 52.1
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 2.5e-32 142.9 186 49.5
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 4.2e-32 142.1 172 51.7
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 4.2e-32 142.1 169 53.3
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 5.5e-32 141.7 169 52.7
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 7.2e-32 141.4 171 50.9
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 1.2e-31 140.6 213 46.0
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.2e-31 140.6 170 51.8
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 1.2e-31 140.6 169 52.1
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.2e-31 140.6 169 52.1
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.6e-31 140.2 175 47.4
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.1e-31 139.8 169 52.1
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 2.1e-31 139.8 167 52.1
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 3.6e-31 139.0 168 50.6
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 6.1e-31 138.3 172 49.4
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 6.1e-31 138.3 171 50.3
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 6.1e-31 138.3 169 52.1
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.0e-30 137.5 179 45.8
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 1.0e-30 137.5 171 52.0
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.4e-30 137.1 171 48.5
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.4e-30 137.1 170 48.2
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 1.4e-30 137.1 172 50.0
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.8e-30 136.7 171 48.0
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 4.0e-30 135.6 170 47.6
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 5.2e-30 135.2 166 50.6
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 8.8e-30 134.4 170 50.6
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 1.5e-29 133.7 169 49.7
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 2.0e-29 133.3 180 49.4
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 3.4e-29 132.5 158 53.8
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 4.4e-29 132.1 172 47.1
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 5.7e-29 131.7 168 49.4
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 5.7e-29 131.7 168 49.4
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 9.8e-29 131.0 169 48.5
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 2.8e-28 129.4 170 47.6
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 2.8e-28 129.4 165 49.7
BcaB04g19962 Brassica carinata HOM05D003084 ORTHO05D003580 1.2e-26 124.0 171 46.2
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 1.2e-26 124.0 172 48.3
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 1.2e-26 124.0 172 48.3
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.2e-26 124.0 162 46.3
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 1.6e-26 123.6 168 45.2
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 1.6e-26 123.6 172 47.7
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 2.0e-26 123.2 173 48.0
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 3.5e-26 122.5 171 45.0
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 4.5e-26 122.1 168 48.2
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 7.7e-26 121.3 172 48.3
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 7.7e-26 121.3 171 45.6
CSS0000201 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.3e-25 120.6 169 47.9
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.7e-25 120.2 144 52.1
Actinidia38788 Actinidia chinensis HOM05D003084 ORTHO05D003580 2.9e-25 119.4 169 45.0
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 3.8e-25 119.0 171 45.6
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 3.8e-25 119.0 182 43.4
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 5.0e-25 118.6 160 46.9
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 6.6e-25 118.2 172 44.8
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 6.6e-25 118.2 168 47.0
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 1.1e-24 117.5 171 43.9
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 2.5e-24 116.3 174 43.7
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 2.5e-24 116.3 172 44.2
C03p62010 Brassica napus HOM05D003084 ORTHO05D003580 7.2e-24 114.8 173 43.4
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.2e-23 114.0 168 44.0
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 2.8e-23 112.8 172 43.6
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 6.1e-23 111.7 172 45.3
HPP92_010381 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.0e-22 109.0 163 47.2
FvH4_4g00110 Fragaria vesca HOM05D003084 ORTHO05D003580 4.9e-20 102.1 134 48.5
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.4e-19 99.8 98 57.1
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 2.4e-19 99.8 168 39.9
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.3e-17 94.0 169 40.8
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 5.0e-17 92.0 168 41.1
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.6e-17 91.7 67 70.1
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 1.9e-16 90.1 154 42.9
Rhsim04G0090100 Rhododendron simsii HOM05D003084 ORTHO05D003580 5.6e-16 88.6 197 35.5
Rhsim04G0095500 Rhododendron simsii HOM05D003084 ORTHO05D003580 7.3e-16 88.2 203 35.0
Sc25g0002420 Simmondsia chinensis HOM05D003084 ORTHO05D003580 4.0e-14 82.4 143 41.3
Os02g0142300 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 4.4e-13 79.0 39 100.0
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.4e-13 79.0 163 36.8
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 5.8e-13 78.6 163 35.0
Oeu052036.1 Olea europaea HOM05D003084 ORTHO05D003580 1.3e-12 77.4 119 42.9
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.3e-12 77.4 161 36.0
Rhsim04G0092700 Rhododendron simsii HOM05D003084 ORTHO05D003580 4.9e-12 75.5 174 34.5
Pp3c7_19180 Physcomitrium patens HOM05D003084 ORTHO05D003580 6.6e-09 65.1 151 39.7
arahy.Tifrunner.gnm1.ann1.8HD4Y1 Arachis hypogaea HOM05D003084 ORTHO05D003580 5.6e-08 62.0 132 39.4
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.1e-06 57.8 135 35.6
Medtr2g009090 Medicago truncatula HOM05D003084 ORTHO05D003580 4.0e-06 55.8 83 39.8


User provided reference genes

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