Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 8.0e-233 810.1 413 100.0
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 1.7e-198 696.0 413 85.0
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 2.0e-154 549.7 411 67.2
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 3.3e-154 548.9 411 67.6
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 4.4e-154 548.5 412 66.0
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 1.1e-152 543.9 411 66.7
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 9.1e-152 540.8 411 65.5
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 3.8e-150 535.4 411 65.7
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 3.8e-150 535.4 411 65.7
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 5.0e-150 535.0 411 65.9
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 5.0e-150 535.0 411 65.5
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 1.5e-149 533.5 411 64.7
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 1.9e-149 533.1 411 64.7
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 3.2e-149 532.3 411 65.0
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 3.2e-149 532.3 412 65.5
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 4.2e-149 531.9 411 64.7
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 7.2e-149 531.2 411 65.0
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 2.7e-148 529.3 412 64.3
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 4.7e-148 528.5 411 65.2
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 1.0e-147 527.3 411 63.3
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 5.2e-147 525.0 412 63.6
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 6.7e-147 524.6 412 64.3
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 1.5e-146 523.5 412 64.1
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 1.5e-146 523.5 412 65.8
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 2.0e-146 523.1 411 65.0
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.0e-146 523.1 412 64.1
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.0e-146 523.1 412 64.3
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 2.0e-146 523.1 411 63.0
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.4e-146 521.9 412 63.8
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 7.5e-146 521.2 412 65.8
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 7.5e-146 521.2 412 64.3
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 9.7e-146 520.8 411 63.3
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 1.3e-145 520.4 412 64.6
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 1.7e-145 520.0 412 63.6
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 2.2e-145 519.6 412 63.6
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 2.2e-145 519.6 412 63.6
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 2.8e-145 519.2 411 63.5
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 3.7e-145 518.8 411 63.0
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 4.8e-145 518.5 412 62.4
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 4.8e-145 518.5 411 64.0
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 6.3e-145 518.1 412 63.3
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 8.2e-145 517.7 411 64.5
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 8.2e-145 517.7 416 62.7
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 4.1e-144 515.4 412 63.1
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 2.0e-143 513.1 411 62.8
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 4.5e-143 511.9 411 62.5
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 5.9e-143 511.5 413 62.5
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 7.7e-143 511.1 411 62.3
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 1.0e-142 510.8 438 60.0
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 1.0e-142 510.8 411 62.5
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 1.3e-142 510.4 411 62.8
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 8.5e-142 507.7 413 60.5
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 8.5e-142 507.7 411 59.6
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 9.4e-141 504.2 412 61.2
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 2.1e-140 503.1 413 63.0
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 3.6e-140 502.3 411 61.6
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 3.6e-140 502.3 411 62.0
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 4.7e-140 501.9 411 60.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 1.8e-139 500.0 412 61.2
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 3.0e-139 499.2 411 61.3
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 4.0e-139 498.8 412 59.7
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 1.2e-138 497.3 407 61.4
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 2.6e-138 496.1 411 61.1
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 3.4e-138 495.7 412 60.0
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 5.7e-138 495.0 411 62.8
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 5.7e-138 495.0 412 60.7
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 2.8e-137 492.7 411 60.1
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 3.1e-136 489.2 412 59.7
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 7.0e-136 488.0 412 58.5
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 7.0e-136 488.0 411 60.1
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 2.0e-135 486.5 411 58.6
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 2.7e-135 486.1 411 60.1
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 7.7e-135 484.6 407 60.0
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 7.7e-135 484.6 380 62.9
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 1.0e-134 484.2 411 59.4
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 1.3e-134 483.8 411 58.2
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 2.2e-134 483.0 411 59.1
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 2.9e-134 482.6 416 57.0
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 5.0e-134 481.9 411 59.9
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 5.0e-134 481.9 411 58.6
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 8.5e-134 481.1 411 58.2
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 1.5e-133 480.3 411 58.4
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 1.9e-133 479.9 411 58.4
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 2.5e-133 479.6 411 60.1
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 4.2e-133 478.8 411 57.4
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 9.4e-133 477.6 411 57.9
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 1.2e-132 477.2 411 58.4
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 1.6e-132 476.9 411 57.4
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 1.6e-132 476.9 411 57.4
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 4.7e-132 475.3 411 57.2
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 1.5e-130 470.3 410 57.3
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 3.4e-130 469.2 413 58.1
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 4.4e-130 468.8 410 59.0
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 7.5e-130 468.0 411 57.4
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 6.3e-129 464.9 448 54.7
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 9.2e-128 461.1 412 57.0
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 3.5e-127 459.1 448 54.0
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 1.3e-121 440.7 353 60.9
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 7.8e-119 431.4 439 51.7
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 5.6e-117 425.2 412 51.0
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 4.0e-115 419.1 413 52.5
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 1.1e-112 411.0 411 52.8
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 1.1e-109 401.0 412 50.0
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 1.1e-107 394.4 375 54.4
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 9.2e-104 381.3 412 49.0
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.4e-99 367.5 313 57.8
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 1.3e-94 350.9 374 49.5
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.5e-93 347.4 443 43.8
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.0e-91 339.3 256 64.8
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 4.3e-85 319.3 234 67.5
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 4.9e-81 305.8 233 63.9
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.0e-78 298.1 235 64.7
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 7.1e-72 275.4 410 40.5
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 5.8e-66 255.8 436 38.5
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.8e-62 244.2 173 68.8
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.1e-61 241.5 370 40.5
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 7.4e-53 212.2 202 55.4
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 5.3e-43 179.5 139 61.2
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 8.2e-28 129.0 91 69.2
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 9.4e-24 115.5 135 45.2
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 5.4e-11 73.2 59 54.2
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 5.4e-11 73.2 142 36.6
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 1.5e-08 65.1 49 57.1
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 9.5e-08 62.4 51 60.8
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 2.8e-07 60.8 51 54.9
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 2.8e-07 60.8 51 54.9
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.8e-06 58.2 50 56.0


User provided reference genes

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