Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 3.8e-246 854.4 424 100.0
Os09g0261100 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D299324 4.9e-52 209.5 245 51.0
Os09g0260000 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D296233 1.8e-49 201.1 253 49.8
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.6e-26 123.2 132 48.5
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 1.8e-25 121.3 132 47.7
Os09g0259500 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D293292 1.3e-23 115.2 214 40.2
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 1.3e-23 115.2 142 43.0
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 3.7e-23 113.6 133 42.9
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 3.7e-23 113.6 132 45.5
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 6.3e-23 112.8 124 46.0
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 6.3e-23 112.8 142 42.3
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.3e-23 112.8 142 42.3
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.3e-23 112.8 142 42.3
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 8.2e-23 112.5 145 42.8
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.1e-22 112.1 165 39.4
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.1e-22 112.1 122 45.1
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.1e-22 112.1 131 43.5
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.4e-22 111.7 133 42.1
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 1.4e-22 111.7 125 44.8
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.8e-22 111.3 124 44.4
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.4e-22 110.9 145 42.1
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.4e-22 110.9 122 44.3
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-22 110.9 132 43.9
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.4e-22 110.9 133 42.9
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.1e-22 110.5 124 43.5
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 3.1e-22 110.5 131 42.0
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.1e-22 110.5 133 41.4
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 3.1e-22 110.5 132 43.9
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 4.1e-22 110.2 131 44.3
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 4.1e-22 110.2 145 42.1
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 4.1e-22 110.2 117 44.4
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 4.1e-22 110.2 132 43.2
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 4.1e-22 110.2 133 43.6
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 4.1e-22 110.2 136 43.4
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 4.1e-22 110.2 122 45.1
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 5.3e-22 109.8 142 41.5
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 5.3e-22 109.8 122 45.1
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 6.9e-22 109.4 133 43.6
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 6.9e-22 109.4 133 43.6
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 6.9e-22 109.4 133 43.6
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 6.9e-22 109.4 132 43.2
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 6.9e-22 109.4 116 45.7
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 9.1e-22 109.0 131 41.2
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 9.1e-22 109.0 132 43.2
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 9.1e-22 109.0 133 42.9
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 9.1e-22 109.0 133 42.9
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 9.1e-22 109.0 142 40.8
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.2e-21 108.6 133 42.9
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.2e-21 108.6 133 42.9
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.2e-21 108.6 130 42.3
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.5e-21 108.2 126 42.1
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 2.0e-21 107.8 121 44.6
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 2.0e-21 107.8 106 47.2
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.0e-21 107.8 107 49.5
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.0e-21 107.8 107 49.5
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 2.0e-21 107.8 116 44.0
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-21 107.5 132 43.2
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 3.4e-21 107.1 133 42.1
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 3.4e-21 107.1 92 54.3
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 3.4e-21 107.1 140 38.6
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 4.5e-21 106.7 113 44.2
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 4.5e-21 106.7 108 46.3
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 4.5e-21 106.7 112 47.3
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 5.9e-21 106.3 124 40.3
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 5.9e-21 106.3 124 42.7
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.0e-20 105.5 113 46.9
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.0e-20 105.5 113 46.9
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-20 105.5 132 42.4
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.0e-20 105.5 96 52.1
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.3e-20 105.1 141 39.7
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.3e-20 105.1 124 42.7
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 1.3e-20 105.1 110 45.5
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.7e-20 104.8 106 47.2
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 2.9e-20 104.0 127 41.7
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 3.8e-20 103.6 131 40.5
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 3.8e-20 103.6 94 52.1
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 3.8e-20 103.6 122 43.4
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 5.0e-20 103.2 141 39.0
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 5.0e-20 103.2 117 43.6
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 6.5e-20 102.8 125 40.8
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 6.5e-20 102.8 87 52.9
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.5e-20 102.8 85 54.1
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 8.5e-20 102.4 99 50.5
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 8.5e-20 102.4 91 52.7
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-19 102.1 128 43.0
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.1e-19 102.1 121 43.0
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.1e-19 102.1 129 41.9
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.4e-19 101.7 131 42.0
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 1.9e-19 101.3 99 49.5
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.9e-19 101.3 99 48.5
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 3.2e-19 100.5 144 38.2
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 3.2e-19 100.5 124 41.1
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 5.5e-19 99.8 99 48.5
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 9.4e-19 99.0 99 47.5
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 9.4e-19 99.0 115 44.3
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.2e-18 98.6 116 43.1
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.6e-18 98.2 124 39.5
Os09g0260200 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D297600 2.1e-18 97.8 215 37.2
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 2.7e-18 97.4 89 50.6
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.7e-18 97.4 104 47.1
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.0e-17 95.5 119 42.9
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.7e-15 87.0 90 46.7
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 2.4e-14 84.3 86 46.5
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 4.1e-14 83.6 86 47.7
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 4.1e-14 83.6 95 45.3
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 9.1e-14 82.4 144 38.9
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.5e-13 81.6 123 39.0
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.0e-13 81.3 94 43.6
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 3.5e-13 80.5 114 43.0
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 3.5e-13 80.5 85 47.1
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 7.7e-13 79.3 119 36.1
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 7.7e-13 79.3 133 35.3
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 6.5e-12 76.3 114 37.7
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 5.5e-11 73.2 91 46.2
Os09g0260300 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D299988 2.1e-10 71.2 201 32.8
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.4e-09 68.6 70 47.1
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 8.8e-09 65.9 163 28.2
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 8.8e-09 65.9 122 34.4
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 8.8e-09 65.9 69 46.4
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 1.1e-08 65.5 72 43.1
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 2.0e-08 64.7 131 31.3
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 2.0e-08 64.7 126 32.5
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 7.4e-08 62.8 125 32.8
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 7.4e-08 62.8 133 30.1
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.7e-07 61.6 113 35.4
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 2.2e-07 61.2 101 38.6
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.2e-07 61.2 91 38.5
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 4.8e-07 60.1 117 31.6
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 4.8e-07 60.1 122 32.8
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 1.1e-06 58.9 121 32.2
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.8e-06 58.2 168 27.4
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.1e-06 57.4 125 29.6
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.3e-06 56.6 60 50.0


User provided reference genes

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