Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu060227.1 Olea europaea HOM05D000104 ORTHO05D004024 3.9e-310 1067.4 571 100.0
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 2.0e-157 560.1 654 54.6
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 5.4e-155 552.0 649 53.9
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 9.6e-152 541.2 698 51.3
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 2.4e-150 536.6 652 53.7
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 1.0e-148 531.2 643 54.7
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 6.7e-145 518.5 599 54.8
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 1.3e-143 514.2 649 52.5
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 4.1e-142 509.2 685 49.3
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 4.5e-141 505.8 656 50.9
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 2.1e-138 496.9 656 50.5
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 1.8e-137 493.8 693 48.6
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 2.3e-137 493.4 655 50.4
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 1.5e-136 490.7 663 49.5
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 2.5e-136 490.0 662 48.5
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 3.3e-136 489.6 653 50.1
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 6.3e-135 485.3 656 50.3
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 2.4e-134 483.4 662 50.5
CiPaw.01G063200 Carya illinoinensis HOM05D000104 ORTHO05D004024 3.1e-134 483.0 657 50.1
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 5.3e-134 482.3 659 49.6
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 2.0e-133 480.3 647 49.5
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 2.6e-133 479.9 661 49.2
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 4.5e-133 479.2 654 49.1
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 1.3e-132 477.6 654 48.5
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 3.8e-132 476.1 654 48.8
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 1.9e-131 473.8 684 48.5
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.2e-131 472.6 650 48.5
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 5.5e-131 472.2 651 48.2
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 5.5e-131 472.2 652 49.5
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.1e-130 470.3 653 48.2
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 2.7e-130 469.9 653 48.2
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 3.6e-130 469.5 652 48.6
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 4.6e-130 469.2 656 49.1
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 6.1e-130 468.8 653 48.1
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 1.8e-129 467.2 699 46.5
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 8.8e-129 464.9 659 48.9
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.1e-128 464.5 659 48.6
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 3.3e-128 463.0 648 49.5
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.3e-128 462.6 659 48.4
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 4.1e-126 456.1 661 47.5
COL.COLO4_12729 Corchorus olitorius HOM05D000104 ORTHO05D004024 5.3e-126 455.7 641 48.0
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 5.3e-126 455.7 663 48.3
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 2.6e-125 453.4 655 47.9
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 2.6e-125 453.4 655 48.1
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.0e-124 451.4 661 47.7
Lalb_Chr17g0339491 Lupinus albus HOM05D000104 ORTHO05D004024 3.8e-124 449.5 658 47.3
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 1.4e-123 447.6 659 47.5
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.4e-123 447.6 652 46.6
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 9.4e-123 444.9 658 47.1
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.6e-122 444.1 659 47.3
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 1.6e-122 444.1 644 46.7
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 7.9e-122 441.8 651 46.4
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.0e-121 441.4 651 46.4
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 3.9e-121 439.5 659 47.2
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 6.7e-121 438.7 651 46.4
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 2.0e-120 437.2 656 47.7
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 2.6e-120 436.8 655 46.3
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 4.4e-120 436.0 689 46.0
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 1.3e-119 434.5 657 45.7
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 2.2e-119 433.7 698 44.6
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 7.0e-118 428.7 654 45.4
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 7.0e-118 428.7 666 46.7
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 5.9e-117 425.6 699 44.3
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 5.9e-117 425.6 656 45.3
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 1.3e-116 424.5 647 46.8
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 5.0e-116 422.5 656 45.0
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 1.9e-115 420.6 670 45.1
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 1.2e-114 417.9 650 45.5
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 3.6e-114 416.4 656 46.3
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 1.0e-113 414.8 655 46.3
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 5.2e-113 412.5 700 43.1
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 2.6e-112 410.2 656 43.9
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 7.5e-112 408.7 699 43.3
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 1.3e-111 407.9 652 44.3
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 1.7e-111 407.5 643 45.1
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 2.2e-111 407.1 694 43.4
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 3.1e-110 403.3 697 43.0
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 4.5e-109 399.4 656 44.7
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 4.5e-109 399.4 638 43.7
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 7.7e-109 398.7 703 42.2
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 1.0e-108 398.3 703 42.2
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 1.3e-108 397.9 653 44.7
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 1.7e-108 397.5 653 44.1
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 1.7e-108 397.5 657 44.4
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 2.9e-108 396.7 652 44.2
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 8.5e-108 395.2 691 42.7
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 4.2e-107 392.9 683 41.3
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 5.5e-107 392.5 683 41.4
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 7.2e-107 392.1 505 51.3
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 4.7e-106 389.4 650 42.8
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 4.7e-106 389.4 658 43.3
VMungo1383G0174 Vigna mungo HOM05D000104 ORTHO05D004024 6.1e-106 389.0 657 44.6
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 8.8e-105 385.2 651 42.9
Rhsim01G0163000 Rhododendron simsii HOM05D000104 ORTHO05D004024 8.8e-105 385.2 630 45.2
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 1.2e-104 384.8 656 44.2
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 4.4e-104 382.9 640 42.7
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 2.8e-103 380.2 648 42.6
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 3.7e-103 379.8 686 41.0
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 4.8e-103 379.4 683 41.6
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 6.3e-103 379.0 653 42.7
HanXRQChr16g0522401 Helianthus annuus HOM05D000104 ORTHO05D004024 6.3e-103 379.0 653 42.7
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 1.4e-102 377.9 657 43.2
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 4.1e-102 376.3 642 41.7
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 4.5e-101 372.9 647 42.0
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 7.7e-101 372.1 644 43.5
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 1.3e-100 371.3 594 44.8
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 2.9e-100 370.2 638 42.9
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 1.1e-99 368.2 649 40.8
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 1.1e-99 368.2 641 41.2
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 4.2e-99 366.3 641 41.2
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 1.8e-97 360.9 642 41.9
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 4.0e-97 359.8 661 41.9
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 1.2e-96 358.2 642 41.1
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 2.6e-96 357.1 642 41.1
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 4.9e-95 352.8 638 42.0
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 7.0e-94 349.0 679 40.1
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 3.8e-92 343.2 641 41.0
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 8.6e-92 342.0 627 42.7
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 1.5e-91 341.3 645 42.0
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 4.3e-91 339.7 657 41.2
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 7.3e-91 339.0 693 39.4
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 1.2e-90 338.2 707 39.5
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 3.0e-89 333.6 638 40.8
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 6.8e-89 332.4 701 37.7
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 1.2e-88 331.6 639 40.5
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 4.4e-88 329.7 638 40.4
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 1.8e-86 324.3 639 40.5
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 1.8e-86 324.3 645 40.6
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 5.4e-86 322.8 567 40.6
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 1.6e-82 311.2 618 40.5
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 2.1e-82 310.8 546 42.1
Os02g0114033 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 1.1e-78 298.5 666 37.5
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 7.0e-78 295.8 670 38.7
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 2.0e-77 294.3 666 38.7
CDE06G1551 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 4.6e-77 293.1 709 35.4
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 3.0e-76 290.4 626 37.9
CDE02G2573 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 8.6e-76 288.9 553 40.0
HPP92_025786 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.5e-75 288.1 660 36.2
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 2.1e-74 284.3 398 49.0
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 1.9e-70 271.2 225 68.9
HPP92_025793 Vanilla planifolia HOM05D000104 ORTHO05D004024 3.2e-70 270.4 533 38.8
Dinv43832 Davidia involucrata HOM05D000104 ORTHO05D004024 2.7e-69 267.3 376 50.3
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 8.4e-63 245.7 234 60.7
Dinv43833 Davidia involucrata HOM05D000104 ORTHO05D004024 1.1e-62 245.4 270 55.6
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 2.4e-62 244.2 591 37.1
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 4.0e-57 226.9 243 56.0
C03p30350 Brassica napus HOM05D000104 ORTHO05D004024 2.0e-48 198.0 163 69.3
Mapoly0001s0041 Marchantia polymorpha HOM05D000104 ORTHO05D004024 9.3e-46 189.1 464 32.8
AagrBONN_evm.TU.Sc2ySwM_228.1015 Anthoceros agrestis HOM05D000104 ORTHO05D004024 1.9e-43 181.4 244 46.3
Pp3c13_14440 Physcomitrium patens HOM05D000104 ORTHO05D004024 1.1e-41 175.6 219 48.4
Pp3c3_15820 Physcomitrium patens HOM05D000104 ORTHO05D004024 1.1e-41 175.6 493 32.9
C07p31560 Brassica napus HOM05D000104 ORTHO05D004024 1.3e-31 142.1 142 60.6
unitig_22.g5348 Utricularia gibba HOM05D000104 ORTHO05D004024 1.3e-31 142.1 226 45.1
C03p30340 Brassica napus HOM05D000104 ORTHO05D004024 2.5e-30 137.9 344 35.2
SEGI_24766 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 2.5e-30 137.9 534 28.3
unitig_8.g3795 Utricularia gibba HOM05D000104 ORTHO05D017821 2.7e-29 134.4 343 35.0
CBR_g12457 Chara braunii HOM05D000104 ORTHO05D004024 3.0e-28 131.0 194 43.3
BcaC06g34219 Brassica carinata HOM05D000104 ORTHO05D004024 3.0e-20 104.4 352 30.4
BolC7t43695H Brassica oleracea HOM05D000104 ORTHO05D004024 6.3e-18 96.7 69 79.7
C07p31550 Brassica napus HOM05D000104 ORTHO05D004024 2.4e-17 94.7 231 35.9
SEGI_28802 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 1.5e-16 92.0 370 31.1
HPP92_022593 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.1e-14 85.9 105 51.4


User provided reference genes

Program Settings