Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu058924.1 Olea europaea HOM05D006443 ORTHO05D007797 1.5e-308 1062.0 514 100.0
MSTRG.502 Avicennia marina HOM05D006443 ORTHO05D007797 2.9e-155 552.7 351 74.1
Migut.K00736 Erythranthe guttata HOM05D006443 ORTHO05D007797 8.7e-152 541.2 358 73.5
Cc11_g16930 Coffea canephora HOM05D006443 ORTHO05D007797 9.9e-148 527.7 358 72.1
Actinidia30647 Actinidia chinensis HOM05D006443 ORTHO05D007797 1.4e-146 523.9 359 71.0
SGA_v2.0_scaffold9G04677 Striga asiatica HOM05D006443 ORTHO05D007797 5.4e-146 521.9 383 67.9
CSS0008831 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.0e-144 517.7 360 70.3
CSS0026603 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.0e-144 517.7 360 70.3
Haze_12422 Corylus avellana HOM05D006443 ORTHO05D007797 1.3e-144 517.3 359 69.4
Nitab4.5_0008905g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 8.7e-144 514.6 358 67.9
QL03p052624 Quercus lobata HOM05D006443 ORTHO05D007797 1.9e-143 513.5 359 69.9
Gorai.012G175900 Gossypium raimondii HOM05D006443 ORTHO05D007797 4.3e-143 512.3 361 68.1
Atru.chr11.2327 Acer truncatum HOM05D006443 ORTHO05D007797 7.3e-143 511.5 361 69.0
Cfa009372 Carpinus fangiana HOM05D006443 ORTHO05D007797 7.3e-143 511.5 359 69.6
Hma1.2p1_0065F.1_g035440 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 1.6e-142 510.4 358 69.3
Gohir.D04G182900 Gossypium hirsutum HOM05D006443 ORTHO05D007797 3.6e-142 509.2 361 67.9
MELO3C011863.2 Cucumis melo HOM05D006443 ORTHO05D007797 1.8e-141 506.9 361 69.3
Gohir.A04G139700 Gossypium hirsutum HOM05D006443 ORTHO05D007797 1.8e-141 506.9 358 67.9
CAN.G237.4 Capsicum annuum HOM05D006443 ORTHO05D007797 3.1e-141 506.1 358 67.3
GSVIVG01010487001 Vitis vinifera HOM05D006443 ORTHO05D007797 3.1e-141 506.1 358 67.3
TWI36G0197 Tripterygium wilfordii HOM05D006443 ORTHO05D007797 5.3e-141 505.4 359 67.1
Duzib248G1079 Durio zibethinus HOM05D006443 ORTHO05D007797 6.9e-141 505.0 359 68.0
Peaxi162Scf00359g00713 Petunia axillaris HOM05D006443 ORTHO05D007797 9.0e-141 504.6 350 69.1
COL.COLO4_20406 Corchorus olitorius HOM05D006443 ORTHO05D007797 1.5e-140 503.8 359 68.2
RcHm_v2.0_Chr4g0430211 Rosa chinensis HOM05D006443 ORTHO05D007797 3.4e-140 502.7 359 67.1
Ciclev10031911m.g Citrus clementina HOM05D006443 ORTHO05D007797 4.5e-140 502.3 359 68.0
Sopen04g017520 Solanum pennellii HOM05D006443 ORTHO05D007797 5.8e-140 501.9 358 67.0
HanXRQChr08g0207841 Helianthus annuus HOM05D006443 ORTHO05D007797 7.6e-140 501.5 360 68.9
Potri.003G171900 Populus trichocarpa HOM05D006443 ORTHO05D007797 2.9e-139 499.6 359 67.4
Cpa.g.sc43.60 Carica papaya HOM05D006443 ORTHO05D007797 4.9e-139 498.8 359 66.9
Solyc04g045590.3 Solanum lycopersicum HOM05D006443 ORTHO05D007797 1.1e-138 497.7 358 66.5
Nitab4.5_0001356g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 1.9e-138 496.9 348 67.2
Prupe.1G225500 Prunus persica HOM05D006443 ORTHO05D007797 1.9e-138 496.9 361 68.4
Thecc.02G208000 Theobroma cacao HOM05D006443 ORTHO05D007797 2.4e-138 496.5 359 67.4
CiPaw.05G109500 Carya illinoinensis HOM05D006443 ORTHO05D007797 4.2e-138 495.7 359 67.7
Sabra03G0125800 Salix brachista HOM05D006443 ORTHO05D007797 5.4e-138 495.4 360 67.2
PGR119G0512 Punica granatum HOM05D006443 ORTHO05D007797 2.1e-137 493.4 361 69.0
FvH4_4g23730 Fragaria vesca HOM05D006443 ORTHO05D007797 2.7e-137 493.0 359 66.3
Glyma.18G006200 Glycine max HOM05D006443 ORTHO05D007797 2.7e-137 493.0 360 67.8
MD13G1119500 Malus domestica HOM05D006443 ORTHO05D007797 3.5e-137 492.7 361 67.3
Nn4g22309 Nelumbo nucifera HOM05D006443 ORTHO05D007797 2.3e-136 490.0 362 64.4
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 5.1e-136 488.8 343 71.7
MBI11_g05329_MAGBIO Magnolia biondii HOM05D006443 ORTHO05D007797 1.1e-135 487.6 358 66.2
CANSAT01G1158 Cannabis sativa HOM05D006443 ORTHO05D007797 4.3e-135 485.7 358 66.2
PSO017G6191 Papaver somniferum HOM05D006443 ORTHO05D007797 9.6e-135 484.6 360 65.3
Glyma.11G250800 Glycine max HOM05D006443 ORTHO05D007797 2.1e-134 483.4 360 66.1
Hund06091 Selenicereus undatus HOM05D006443 ORTHO05D007797 6.2e-134 481.9 360 66.4
PSO478G2155 Papaver somniferum HOM05D006443 ORTHO05D007797 8.1e-134 481.5 360 65.6
Lalb_Chr11g0075761 Lupinus albus HOM05D006443 ORTHO05D007797 1.8e-133 480.3 358 66.5
Phvul.001G262100 Phaseolus vulgaris HOM05D006443 ORTHO05D007797 1.8e-133 480.3 360 65.8
VMungo1383G0397 Vigna mungo HOM05D006443 ORTHO05D007797 4.0e-133 479.2 360 66.1
Sc14g0009070 Simmondsia chinensis HOM05D006443 ORTHO05D007797 1.2e-132 477.6 359 66.3
Actinidia08069 Actinidia chinensis HOM05D006443 ORTHO05D007797 2.0e-132 476.9 362 66.3
FAN07G1264 Fragaria x ananassa HOM05D006443 ORTHO05D007797 5.8e-132 475.3 359 64.3
Medtr3g085290 Medicago truncatula HOM05D006443 ORTHO05D007797 1.0e-131 474.6 361 65.7
FAN22G2300 Fragaria x ananassa HOM05D006443 ORTHO05D007797 1.7e-131 473.8 359 64.3
THA.LOC104807130 Tarenaya hassleriana HOM05D006443 ORTHO05D007797 1.7e-131 473.8 363 64.7
Aqoxy5G03367 Aquilegia oxysepala HOM05D006443 ORTHO05D007797 1.1e-130 471.1 354 66.1
Ca_16457_v3 Cicer arietinum L. HOM05D006443 ORTHO05D007797 1.9e-130 470.3 360 65.3
arahy.Tifrunner.gnm1.ann1.P16M7J Arachis hypogaea HOM05D006443 ORTHO05D007797 4.2e-130 469.2 359 65.5
Psat5g096400 Pisum sativum HOM05D006443 ORTHO05D007797 4.2e-130 469.2 360 64.7
Eucgr.H04637 Eucalyptus grandis HOM05D006443 ORTHO05D007797 1.6e-129 467.2 360 63.3
TPR.G17786 Trifolium pratense HOM05D006443 ORTHO05D007797 1.6e-129 467.2 360 65.3
arahy.Tifrunner.gnm1.ann1.DXN1WG Arachis hypogaea HOM05D006443 ORTHO05D007797 2.1e-129 466.8 359 64.9
Lsat_1_v5_gn_4_56020 Lactuca sativa HOM05D006443 ORTHO05D007797 2.7e-129 466.5 360 65.0
AT1G11780 Arabidopsis thaliana HOM05D006443 ORTHO05D007797 7.9e-129 464.9 360 63.3
Thhalv10008060m.g Eutrema salsugineum HOM05D006443 ORTHO05D007797 7.9e-129 464.9 361 64.5
FAN17G1989 Fragaria x ananassa HOM05D006443 ORTHO05D007797 1.3e-128 464.2 411 57.7
AL1G22970 Arabidopsis lyrata HOM05D006443 ORTHO05D007797 1.8e-128 463.8 362 63.0
Sp1g10410 Schrenkiella parvula HOM05D006443 ORTHO05D007797 2.3e-128 463.4 361 62.9
Carub.0001s1145 Capsella rubella HOM05D006443 ORTHO05D007797 6.7e-128 461.8 360 63.9
Lj6C827T5 Lonicera japonica HOM05D006443 ORTHO05D007797 1.6e-126 457.2 411 60.1
unitig_747.g21126 Utricularia gibba HOM05D006443 ORTHO05D007797 2.1e-126 456.8 338 65.4
CARHR012120 Cardamine hirsuta HOM05D006443 ORTHO05D007797 1.8e-125 453.8 359 63.0
BcaB08g37422 Brassica carinata HOM05D006443 ORTHO05D007797 2.4e-125 453.4 362 63.0
BraA09t41778Z Brassica rapa HOM05D006443 ORTHO05D007797 9.0e-125 451.4 361 63.2
AUR62005622 Chenopodium quinoa HOM05D006443 ORTHO05D007797 2.6e-124 449.9 360 62.5
Manes.13G011800 Manihot esculenta HOM05D006443 ORTHO05D007797 4.5e-124 449.1 319 67.4
BolC8t52335H Brassica oleracea HOM05D006443 ORTHO05D007797 7.6e-124 448.4 362 62.4
CDE05G3615 Ceratophyllum demersum HOM05D006443 ORTHO05D007797 1.3e-123 447.6 358 61.7
Lj6g0022486 Lotus japonicus HOM05D006443 ORTHO05D007797 1.3e-123 447.6 365 61.6
BcaC07g41759 Brassica carinata HOM05D006443 ORTHO05D007797 3.8e-123 446.0 362 62.2
Aa31LG1G3790 Aethionema arabicum HOM05D006443 ORTHO05D007797 8.4e-123 444.9 360 62.5
ClCG11G013630 Citrullus lanatus HOM05D006443 ORTHO05D007797 3.5e-121 439.5 361 62.0
Sed0000233 Sechium edule HOM05D006443 ORTHO05D007797 4.8e-118 429.1 319 65.5
ATR0561G191 Amborella trichopoda HOM05D006443 ORTHO05D007797 2.2e-115 420.2 320 63.4
vmacro19384 Vaccinium macrocarpon HOM05D006443 ORTHO05D007797 6.7e-112 408.7 373 57.9
AUR62028926 Chenopodium quinoa HOM05D006443 ORTHO05D007797 1.4e-109 401.0 316 62.3
C08p47970 Brassica napus HOM05D006443 ORTHO05D007797 5.9e-108 395.6 304 64.8
Zm00001eb169540 Zea mays HOM05D006443 ORTHO05D007797 7.7e-108 395.2 372 56.7
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 5.0e-107 392.5 304 64.8
EL10Ac6g13506 Beta vulgaris HOM05D006443 ORTHO05D007797 5.7e-103 379.0 324 60.2
SalBow1G6802 Salvia bowleyana HOM05D006443 ORTHO05D007797 1.3e-99 367.9 252 71.0
SalBow2G0214 Salvia bowleyana HOM05D006443 ORTHO05D007797 1.3e-99 367.9 252 71.0
SEGI_28427 Sequoiadendron giganteum HOM05D006443 ORTHO05D007797 2.2e-99 367.1 364 54.7
CsaV3_5G030250 Cucumis sativus L. HOM05D006443 ORTHO05D007797 5.0e-99 365.9 251 71.7
Rhsim12G0099900 Rhododendron simsii HOM05D006443 ORTHO05D007797 3.2e-98 363.2 262 66.0
Dinv17565 Davidia involucrata HOM05D006443 ORTHO05D007797 1.1e-90 338.2 255 66.3
Mapoly0036s0054 Marchantia polymorpha HOM05D006443 ORTHO05D007797 4.2e-90 336.3 407 46.7
Os11g0488500 Oryza sativa ssp. japonica HOM05D006443 ORTHO05D007797 1.4e-88 331.3 321 54.2
SMO196G0120 Selaginella moellendorffii HOM05D006443 ORTHO05D007797 3.4e-87 326.6 353 50.4
AagrBONN_evm.TU.Sc2ySwM_228.5822 Anthoceros agrestis HOM05D006443 ORTHO05D007797 1.4e-85 321.2 357 48.5
Pp3c15_20640 Physcomitrium patens HOM05D006443 ORTHO05D007797 5.9e-84 315.8 392 44.9
TAR629G0791 Trochodendron aralioides HOM05D006443 ORTHO05D007797 5.5e-82 309.3 199 72.9
CBR_g32330 Chara braunii HOM05D006443 ORTHO05D007797 1.0e-59 235.3 581 32.2
Hma1.2p1_0065F.1_g035450 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 8.1e-57 225.7 134 79.9
DCAR_031205 Daucus carota HOM05D006443 ORTHO05D007797 1.1e-56 225.3 207 57.0
CSS0017614 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 3.2e-53 213.8 126 78.6
CSS0019305 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 3.5e-52 210.3 126 77.8
DCAR_031204 Daucus carota HOM05D006443 ORTHO05D007797 2.3e-48 197.6 122 74.6
ClCG11G013640 Citrullus lanatus HOM05D006443 ORTHO05D007797 2.2e-38 164.5 100 78.0
Cre06.g278198 Chlamydomonas reinhardtii HOM05D006443 ORTHO05D007797 7.8e-36 156.0 248 36.3
PRCOL_00005324 Prasinoderma coloniale HOM05D006443 ORTHO05D007797 1.8e-24 118.2 162 40.1
CSS0022605 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 2.4e-24 117.9 97 61.9
MCO14G547 Micromonas commoda HOM05D006443 ORTHO05D007797 2.4e-24 117.9 126 44.4
C08p48190 Brassica napus HOM05D006443 ORTHO05D007797 3.1e-24 117.5 89 61.8
BolC8t52352H Brassica oleracea HOM05D006443 ORTHO05D007797 1.2e-23 115.5 89 60.7
Cfa001627 Carpinus fangiana HOM05D006443 ORTHO05D007797 3.3e-18 97.4 175 34.3
FAN12G3107 Fragaria x ananassa HOM05D006443 ORTHO05D007797 2.0e-15 88.2 87 47.1
TAR629G0787 Trochodendron aralioides HOM05D006443 ORTHO05D007797 3.8e-14 84.0 72 52.8
Rhsim12G0100100 Rhododendron simsii HOM05D006443 ORTHO05D007797 4.2e-13 80.5 101 44.6
C08p46980 Brassica napus HOM05D006443 ORTHO05D007797 1.6e-12 78.6 58 60.3
BolC8t52235H Brassica oleracea HOM05D006443 ORTHO05D007797 1.6e-12 78.6 58 60.3
CSS0049531 Camellia sinensis var. sinensis HOM05D001731 ORTHO05D000001 2.1e-12 78.2 53 66.0
VMungo0331G1094 Vigna mungo HOM05D003341 ORTHO05D003603 4.3e-10 70.5 181 29.3
Phvul.001G131400 Phaseolus vulgaris HOM05D003341 ORTHO05D003603 5.7e-10 70.1 193 29.0
VMungo0331G2034 Vigna mungo HOM05D003341 ORTHO05D003603 5.7e-10 70.1 180 27.8
Atru.chr8.2366 Acer truncatum HOM05D003341 ORTHO05D003603 1.6e-09 68.6 190 27.9
Migut.J00071 Erythranthe guttata HOM05D003341 ORTHO05D003603 3.7e-09 67.4 194 28.9
VMungo0720G1619 Vigna mungo HOM05D003341 ORTHO05D003603 3.7e-09 67.4 180 26.7
MSTRG.5521 Avicennia marina HOM05D003341 ORTHO05D003603 6.3e-09 66.6 180 27.2
Gorai.011G130100 Gossypium raimondii HOM05D003341 ORTHO05D003603 6.3e-09 66.6 190 28.9
Thecc.04G156400 Theobroma cacao HOM05D003341 ORTHO05D003603 6.3e-09 66.6 190 27.9
Sc10g0007940 Simmondsia chinensis HOM05D003341 ORTHO05D003603 1.1e-08 65.9 122 32.8
Ciclev10012606m.g Citrus clementina HOM05D003341 ORTHO05D003603 1.4e-08 65.5 122 32.8
Cc04_g00980 Coffea canephora HOM05D003341 ORTHO05D003603 1.4e-08 65.5 159 30.2
Ah.08g209790 Amaranthus hybridus HOM05D003341 ORTHO05D003603 3.1e-08 64.3 122 33.6
Gohir.D10G118300 Gossypium hirsutum HOM05D003341 ORTHO05D003603 3.1e-08 64.3 158 31.0
MBI15_g40704_MAGBIO Magnolia biondii HOM05D003341 ORTHO05D003603 5.3e-08 63.5 122 34.4
Psat5g189880 Pisum sativum HOM05D003341 ORTHO05D003603 5.3e-08 63.5 97 37.1
Cfa003499 Carpinus fangiana HOM05D003341 ORTHO05D003603 6.9e-08 63.2 122 32.8
AUR62006332 Chenopodium quinoa HOM05D003341 ORTHO05D003603 6.9e-08 63.2 154 28.6
Gohir.A10G148300 Gossypium hirsutum HOM05D003341 ORTHO05D003603 6.9e-08 63.2 159 30.2
Lsat_1_v5_gn_1_49781 Lactuca sativa HOM05D000682 ORTHO05D000510 6.9e-08 63.2 110 34.5
Oeu064882.1 Olea europaea HOM05D003341 ORTHO05D003603 6.9e-08 63.2 167 28.7
vmacro22021 Vaccinium macrocarpon HOM05D003341 ORTHO05D003603 6.9e-08 63.2 171 29.2
Cfa003500 Carpinus fangiana HOM05D003341 ORTHO05D003603 9.0e-08 62.8 122 32.0
Migut.I01109 Erythranthe guttata HOM05D003341 ORTHO05D003603 9.0e-08 62.8 87 39.1
Sed0009033 Sechium edule HOM05D003341 ORTHO05D003603 9.0e-08 62.8 155 31.0
COL.COLO4_36103 Corchorus olitorius HOM05D003341 ORTHO05D003603 1.2e-07 62.4 192 25.0
Lalb_Chr12g0207541 Lupinus albus HOM05D003341 ORTHO05D003603 1.2e-07 62.4 149 31.5
CANSAT56G3367 Cannabis sativa HOM05D003341 ORTHO05D003603 1.5e-07 62.0 154 30.5
Lj2C63G6 Lonicera japonica HOM05D003341 ORTHO05D003603 2.0e-07 61.6 153 28.1
AUR62026370 Chenopodium quinoa HOM05D003341 ORTHO05D003603 3.4e-07 60.8 154 27.3
Zm00001eb212020 Zea mays HOM05D003341 ORTHO05D003603 3.4e-07 60.8 122 32.0
Glyma.01G129600 Glycine max HOM05D003341 ORTHO05D003603 5.9e-07 60.1 92 33.7
QL05p003212 Quercus lobata HOM05D003341 ORTHO05D003603 5.9e-07 60.1 122 32.8
CARHR089020 Cardamine hirsuta HOM05D003341 ORTHO05D003603 7.6e-07 59.7 86 38.4
Psat7g228080 Pisum sativum HOM05D003341 ORTHO05D003603 7.6e-07 59.7 110 30.9
Thecc.06G125900 Theobroma cacao HOM05D003341 ORTHO05D003603 7.6e-07 59.7 139 30.9
Actinidia26012 Actinidia chinensis HOM05D003341 ORTHO05D003603 1.3e-06 58.9 147 29.9
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 1.3e-06 58.9 94 34.0
TAR633G0659 Trochodendron aralioides HOM05D003341 ORTHO05D003603 1.3e-06 58.9 122 32.0
CsaV3_4G026990 Cucumis sativus L. HOM05D003341 ORTHO05D003603 2.2e-06 58.2 151 31.1
HanXRQChr09g0276511 Helianthus annuus HOM05D003341 ORTHO05D003603 2.2e-06 58.2 84 33.3
EL10Ac7g17042 Beta vulgaris HOM05D003341 ORTHO05D003603 2.9e-06 57.8 125 32.0
GSVIVG01016708001 Vitis vinifera HOM05D003341 ORTHO05D003603 2.9e-06 57.8 122 31.1
THA.LOC104823314 Tarenaya hassleriana HOM05D003341 ORTHO05D003603 5.0e-06 57.0 125 32.8


User provided reference genes

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