Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 6.4e-166 587.4 312 100.0
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.5e-127 459.9 311 78.5
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 5.5e-125 451.4 312 76.6
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 7.2e-125 451.1 312 77.2
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 4.6e-124 448.4 312 77.6
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-119 433.7 287 78.0
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.0e-118 430.6 311 74.9
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 2.9e-118 429.1 311 72.7
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 1.1e-117 427.2 320 72.8
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.9e-117 426.4 297 74.7
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 3.2e-117 425.6 312 71.8
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 9.4e-117 424.1 313 73.5
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 9.4e-117 424.1 312 71.5
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.2e-116 423.7 312 72.1
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.6e-116 423.3 313 72.8
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.1e-116 422.9 313 73.5
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 6.1e-116 421.4 316 73.1
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 7.9e-116 421.0 312 71.2
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.4e-115 420.2 294 74.8
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.8e-115 419.9 296 74.0
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 3.9e-115 418.7 296 74.3
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 5.1e-115 418.3 310 73.9
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 2.0e-114 416.4 311 71.1
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 2.0e-114 416.4 313 71.2
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 7.4e-114 414.5 312 72.8
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.3e-113 413.7 316 72.2
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.8e-113 412.5 304 72.4
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.4e-112 410.2 317 71.6
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.4e-112 410.2 317 71.3
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 4.1e-112 408.7 311 69.1
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 5.3e-112 408.3 311 70.4
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.2e-111 407.1 317 71.3
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 2.0e-111 406.4 320 69.4
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.6e-111 406.0 316 71.5
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 3.4e-111 405.6 297 72.1
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.5e-111 405.2 317 71.0
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.9e-111 404.8 308 71.4
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 7.7e-111 404.4 280 75.7
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 7.7e-111 404.4 317 71.3
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.7e-110 403.3 317 71.0
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 6.5e-110 401.4 301 70.1
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 6.5e-110 401.4 305 69.8
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.1e-109 400.6 297 71.0
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.1e-109 400.6 304 70.7
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 2.5e-109 399.4 302 70.9
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 2.5e-109 399.4 315 69.2
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 9.4e-109 397.5 296 70.9
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 9.4e-109 397.5 303 69.6
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.6e-108 396.7 312 68.6
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.7e-108 396.0 312 68.6
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.7e-108 396.0 395 58.5
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 3.6e-108 395.6 313 69.0
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.6e-108 395.6 308 69.2
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.6e-108 395.6 308 69.2
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 4.7e-108 395.2 341 66.6
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 6.1e-108 394.8 308 69.2
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.0e-107 394.0 308 68.8
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.8e-107 393.3 308 68.8
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.8e-107 393.3 305 69.8
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 2.3e-107 392.9 312 66.3
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 3.0e-107 392.5 385 61.3
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 6.7e-107 391.3 309 67.6
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 4.4e-106 388.7 311 67.5
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 5.7e-106 388.3 311 67.2
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 5.7e-106 388.3 311 67.5
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.7e-105 385.6 312 66.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 4.8e-105 385.2 315 66.3
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.4e-104 383.6 279 71.0
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.4e-104 382.9 314 65.9
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.4e-104 382.9 314 66.6
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 3.1e-104 382.5 314 66.2
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 7.0e-104 381.3 306 66.3
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 9.1e-104 380.9 306 66.3
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.2e-103 380.6 312 66.3
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.6e-103 380.2 332 63.6
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 2.6e-103 379.4 301 67.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 4.5e-103 378.6 310 66.8
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 5.9e-103 378.3 314 65.6
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 7.7e-103 377.9 333 63.7
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.0e-102 377.5 309 67.3
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 2.9e-102 375.9 314 65.3
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 2.9e-102 375.9 312 65.1
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.1e-101 374.0 280 68.2
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.1e-101 374.0 276 69.2
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.9e-101 373.2 310 64.5
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 5.5e-101 371.7 313 64.2
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 7.2e-101 371.3 280 67.9
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.6e-100 370.2 277 67.5
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 2.1e-100 369.8 305 65.9
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.1e-100 369.8 324 63.9
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 3.6e-100 369.0 312 63.8
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 3.6e-100 369.0 312 65.1
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 3.0e-99 365.9 315 63.2
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 8.8e-99 364.4 306 66.3
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.0e-98 363.2 303 64.0
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 3.3e-98 362.5 296 65.9
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 4.4e-98 362.1 312 64.1
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 2.2e-97 359.8 300 65.0
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 2.8e-97 359.4 306 63.4
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 3.7e-97 359.0 312 63.5
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 3.7e-97 359.0 312 63.5
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 8.2e-97 357.8 305 63.3
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 9.1e-96 354.4 337 59.1
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 2.7e-95 352.8 304 62.2
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 4.5e-95 352.1 300 63.7
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 4.5e-95 352.1 282 64.9
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.9e-95 351.7 243 73.7
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 7.7e-95 351.3 313 60.7
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.0e-94 350.9 309 62.1
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.0e-94 350.9 309 62.1
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 6.5e-94 348.2 302 61.9
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.5e-93 347.1 319 63.6
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-93 347.1 302 61.9
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.9e-93 346.7 314 59.6
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.9e-93 346.7 304 61.5
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.2e-93 345.5 279 62.0
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 5.5e-93 345.1 302 61.6
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 9.4e-93 344.4 300 63.3
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 9.4e-93 344.4 302 61.6
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-91 340.1 318 59.7
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 5.2e-91 338.6 307 60.6
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.2e-91 338.6 292 64.4
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.2e-91 338.6 289 60.2
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 2.6e-90 336.3 332 59.0
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.0e-86 322.0 332 59.6
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 1.0e-83 314.3 311 57.2
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 2.8e-81 306.2 329 55.9
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 4.1e-80 302.4 291 58.4
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 5.9e-79 298.5 304 56.9
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 7.3e-77 291.6 311 60.1
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 1.7e-73 280.4 305 53.1
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 1.8e-72 276.9 288 57.3
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 2.4e-72 276.6 289 57.4
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.6e-71 273.9 284 53.5
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.3e-70 270.0 298 51.3
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 6.6e-70 268.5 243 61.3
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 3.6e-68 262.7 248 56.9
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 8.0e-68 261.5 278 53.2
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 2.0e-66 256.9 167 77.2
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 2.9e-65 253.1 304 52.0
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 3.3e-61 239.6 269 52.4
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.1e-59 234.6 165 72.7
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 3.1e-59 233.0 231 59.7
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 2.6e-58 229.9 268 53.7
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 1.9e-53 213.8 248 52.8
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.4e-50 203.0 187 66.3
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 7.1e-48 195.3 141 68.1
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.1e-47 193.7 137 75.2
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-42 177.9 188 57.4
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.5e-39 166.4 173 57.8
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.3e-38 164.5 272 40.8
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 3.9e-38 162.9 157 61.8
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.6e-34 150.2 115 74.8
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-26 124.4 148 54.7
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 9.9e-26 121.7 265 34.7
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.2e-23 114.8 346 31.8
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.5e-21 107.1 79 63.3
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.9e-16 90.9 99 53.5
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 9.3e-16 88.6 65 67.7
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.3e-14 84.7 89 49.4
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.0e-14 83.6 83 55.4
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 3.0e-14 83.6 61 72.1
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.0e-10 70.9 43 72.1
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 1.4e-08 64.7 42 73.8
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 2.5e-08 63.9 39 84.6
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 4.6e-07 59.7 107 43.9
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 4.6e-07 59.7 50 58.0
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 1.3e-06 58.2 93 44.1
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 6.7e-06 55.8 52 55.8


User provided reference genes

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