Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055503.2 Olea europaea HOM05D005501 ORTHO05D007485 2.3e-268 928.3 470 100.0
Dinv43691 Davidia involucrata HOM05D005501 ORTHO05D007485 2.8e-189 665.6 463 75.6
MSTRG.20738 Avicennia marina HOM05D005501 ORTHO05D007485 6.9e-188 661.0 468 74.4
GSVIVG01027664001 Vitis vinifera HOM05D005501 ORTHO05D007485 5.8e-187 657.9 467 73.2
FAN03G0203 Fragaria x ananassa HOM05D005501 ORTHO05D007485 7.1e-185 651.0 460 74.3
Lj7C531T10 Lonicera japonica HOM05D005501 ORTHO05D007485 9.3e-185 650.6 463 73.9
FvH4_7g11490 Fragaria vesca HOM05D005501 ORTHO05D007485 1.6e-184 649.8 460 74.1
FAN10G2758 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.6e-184 649.8 460 74.1
QL08p052809 Quercus lobata HOM05D005501 ORTHO05D007485 1.6e-184 649.8 461 73.5
FAN06G3216 Fragaria x ananassa HOM05D005501 ORTHO05D007485 2.1e-184 649.4 460 73.9
TAR374G1545 Trochodendron aralioides HOM05D005501 ORTHO05D007485 3.5e-184 648.7 465 73.5
FAN06G2192 Fragaria x ananassa HOM05D005501 ORTHO05D007485 4.6e-184 648.3 460 73.9
FAN10G2689 Fragaria x ananassa HOM05D005501 ORTHO05D007485 4.6e-184 648.3 460 73.9
Potri.014G067800 Populus trichocarpa HOM05D005501 ORTHO05D007485 4.6e-184 648.3 465 72.7
CSS0010588 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 1.3e-183 646.7 462 72.9
FAN01G2666 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.7e-183 646.4 460 73.7
CSS0024830 Camellia sinensis var. sinensis HOM05D005501 ORTHO05D007485 3.0e-183 645.6 462 72.7
RcHm_v2.0_Chr1g0349931 Rosa chinensis HOM05D005501 ORTHO05D007485 1.5e-182 643.3 459 72.8
TWI14G0369 Tripterygium wilfordii HOM05D005501 ORTHO05D007485 3.3e-182 642.1 469 70.6
TAR375G0004 Trochodendron aralioides HOM05D005501 ORTHO05D007485 9.6e-182 640.6 465 72.0
Nn1g01133 Nelumbo nucifera HOM05D005501 ORTHO05D007485 1.6e-181 639.8 465 71.4
Prupe.2G143300 Prunus persica HOM05D005501 ORTHO05D007485 2.1e-181 639.4 465 71.8
Cc02_g24090 Coffea canephora HOM05D005501 ORTHO05D007485 4.8e-181 638.3 467 69.8
CANSAT56G2357 Cannabis sativa HOM05D005501 ORTHO05D007485 8.1e-181 637.5 462 71.6
Sc02g0002650 Simmondsia chinensis HOM05D005501 ORTHO05D007485 1.1e-180 637.1 459 71.2
Sabra14G0047700 Salix brachista HOM05D005501 ORTHO05D007485 5.3e-180 634.8 464 71.8
MD02G1206900 Malus domestica HOM05D005501 ORTHO05D007485 9.0e-180 634.0 465 71.2
Gorai.004G162900 Gossypium raimondii HOM05D005501 ORTHO05D007485 4.5e-179 631.7 466 69.5
PGSC0003DMG401007021 Solanum tuberosum HOM05D005501 ORTHO05D007485 4.5e-179 631.7 465 70.1
Duzib133G0079 Durio zibethinus HOM05D005501 ORTHO05D007485 9.9e-179 630.6 461 70.3
Glyma.03G027900 Glycine max HOM05D005501 ORTHO05D007485 9.9e-179 630.6 460 70.4
Cpa.g.sc18.102 Carica papaya HOM05D005501 ORTHO05D007485 1.3e-178 630.2 463 70.2
vmacro13416 Vaccinium macrocarpon HOM05D005501 ORTHO05D007485 1.3e-178 630.2 489 68.3
CsaV3_3G009810 Cucumis sativus L. HOM05D005501 ORTHO05D007485 2.2e-178 629.4 463 70.2
Lj3g0016597 Lotus japonicus HOM05D005501 ORTHO05D007485 2.2e-178 629.4 465 69.5
MELO3C006202.2 Cucumis melo HOM05D005501 ORTHO05D007485 3.8e-178 628.6 463 70.0
Gohir.D08G156600 Gossypium hirsutum HOM05D005501 ORTHO05D007485 4.9e-178 628.2 466 69.3
TPR.G7589 Trifolium pratense HOM05D005501 ORTHO05D007485 8.4e-178 627.5 458 70.1
Migut.B01618 Erythranthe guttata HOM05D005501 ORTHO05D007485 1.9e-177 626.3 466 70.0
Ca_19945_v3 Cicer arietinum L. HOM05D005501 ORTHO05D007485 2.4e-177 625.9 460 70.2
Sopen05g029410 Solanum pennellii HOM05D005501 ORTHO05D007485 3.2e-177 625.5 466 69.7
CAN.G295.11 Capsicum annuum HOM05D005501 ORTHO05D007485 4.2e-177 625.2 459 70.6
Lalb_Chr07g0189951 Lupinus albus HOM05D005501 ORTHO05D007485 5.4e-177 624.8 461 68.8
Phvul.010G081700 Phaseolus vulgaris HOM05D005501 ORTHO05D007485 1.6e-176 623.2 458 69.2
Sp4g27290 Schrenkiella parvula HOM05D005501 ORTHO05D007485 2.7e-176 622.5 468 69.4
SpUn0031_0030 Schrenkiella parvula HOM05D005501 ORTHO05D007485 2.7e-176 622.5 468 69.4
Solyc05g050940.4 Solanum lycopersicum HOM05D005501 ORTHO05D007485 6.0e-176 621.3 462 69.7
Gohir.A08G135800 Gossypium hirsutum HOM05D005501 ORTHO05D007485 1.0e-175 620.5 466 68.5
HanXRQChr16g0519981 Helianthus annuus HOM05D005501 ORTHO05D007485 1.3e-175 620.2 471 69.9
Sed0021448 Sechium edule HOM05D005501 ORTHO05D007485 2.3e-175 619.4 460 68.5
Thhalv10001427m.g Eutrema salsugineum HOM05D005501 ORTHO05D007485 3.0e-175 619.0 463 69.5
arahy.Tifrunner.gnm1.ann1.J20DWG Arachis hypogaea HOM05D005501 ORTHO05D007485 6.7e-175 617.8 470 68.3
Aa31LG1G26800 Aethionema arabicum HOM05D005501 ORTHO05D007485 1.5e-174 616.7 466 68.5
Actinidia12246 Actinidia chinensis HOM05D005501 ORTHO05D007485 1.9e-174 616.3 492 67.7
Manes.01G266900 Manihot esculenta HOM05D005501 ORTHO05D007485 1.9e-174 616.3 465 69.5
THA.LOC104817237 Tarenaya hassleriana HOM05D005501 ORTHO05D007485 1.9e-174 616.3 458 69.4
Aqoxy7G00665 Aquilegia oxysepala HOM05D005501 ORTHO05D007485 2.5e-174 615.9 460 70.4
MBI04_g44162_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 7.4e-174 614.4 470 68.9
AT2G45270 Arabidopsis thaliana HOM05D005501 ORTHO05D007485 1.3e-173 613.6 463 68.7
Medtr4g024920 Medicago truncatula HOM05D005501 ORTHO05D007485 3.7e-173 612.1 460 68.9
AUR62004192 Chenopodium quinoa HOM05D005501 ORTHO05D007485 1.8e-172 609.8 459 69.3
unitig_37.g12896 Utricularia gibba HOM05D005501 ORTHO05D007485 2.4e-172 609.4 456 70.6
Peaxi162Scf00959g00124 Petunia axillaris HOM05D005501 ORTHO05D007485 3.1e-172 609.0 468 68.4
Lsat_1_v5_gn_4_43120 Lactuca sativa HOM05D005501 ORTHO05D007485 5.3e-172 608.2 463 69.5
BcaC02g12231 Brassica carinata HOM05D005501 ORTHO05D007485 6.9e-172 607.8 464 67.7
AL4G44370 Arabidopsis lyrata HOM05D005501 ORTHO05D007485 1.2e-171 607.1 464 68.1
Nitab4.5_0003912g0080 Nicotiana tabacum HOM05D005501 ORTHO05D007485 3.4e-171 605.5 443 70.4
EL10Ac1g00871 Beta vulgaris HOM05D005501 ORTHO05D007485 5.8e-171 604.7 464 67.5
Carub.0004s2787 Capsella rubella HOM05D005501 ORTHO05D007485 7.6e-171 604.4 462 68.0
BolC4t22243H Brassica oleracea HOM05D005501 ORTHO05D007485 9.9e-171 604.0 464 67.9
BraA05t19495Z Brassica rapa HOM05D005501 ORTHO05D007485 1.3e-170 603.6 465 67.5
C04p06180 Brassica napus HOM05D005501 ORTHO05D007485 1.7e-170 603.2 465 67.5
CARHR140480 Cardamine hirsuta HOM05D005501 ORTHO05D007485 2.2e-170 602.8 461 68.1
A05p05250 Brassica napus HOM05D005501 ORTHO05D007485 2.9e-170 602.4 465 67.5
ClCG05G002370 Citrullus lanatus HOM05D005501 ORTHO05D007485 4.9e-170 601.7 504 63.7
BcaB02g08946 Brassica carinata HOM05D005501 ORTHO05D007485 1.1e-169 600.5 463 67.0
Eucgr.E01449 Eucalyptus grandis HOM05D005501 ORTHO05D007485 1.9e-169 599.7 462 67.3
ATR0757G194 Amborella trichopoda HOM05D005501 ORTHO05D007485 1.6e-168 596.7 455 69.0
Nitab4.5_0001329g0140 Nicotiana tabacum HOM05D005501 ORTHO05D007485 2.1e-168 596.3 449 69.0
PSO478G3019 Papaver somniferum HOM05D005501 ORTHO05D007485 6.0e-168 594.7 460 68.3
PSO782G1940 Papaver somniferum HOM05D005501 ORTHO05D007485 1.0e-167 594.0 460 68.3
Hund17031 Selenicereus undatus HOM05D005501 ORTHO05D007485 1.9e-166 589.7 513 62.4
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 2.5e-166 589.3 447 68.7
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 9.6e-166 587.4 462 67.5
CDE11G1124 Ceratophyllum demersum HOM05D005501 ORTHO05D007485 6.2e-165 584.7 475 66.1
arahy.Tifrunner.gnm1.ann1.M89JWR Arachis hypogaea HOM05D005501 ORTHO05D007485 1.4e-164 583.6 508 62.4
Ah.05g176650 Amaranthus hybridus HOM05D005501 ORTHO05D007485 2.6e-163 579.3 458 65.9
SGA_v2.0_scaffold95G28910 Striga asiatica HOM05D005501 ORTHO05D007485 4.5e-163 578.6 479 64.9
PGR042G1853 Punica granatum HOM05D005501 ORTHO05D007485 5.8e-163 578.2 464 67.0
DCAR_002088 Daucus carota HOM05D005501 ORTHO05D007485 1.3e-159 567.0 428 69.4
CiPaw.01G263800 Carya illinoinensis HOM05D005501 ORTHO05D007485 6.3e-157 558.1 413 69.7
VMungo0331G1483 Vigna mungo HOM05D005501 ORTHO05D007485 1.4e-156 557.0 416 68.8
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 1.0e-154 550.8 491 60.7
AUR62013652 Chenopodium quinoa HOM05D005501 ORTHO05D007485 5.0e-154 548.5 462 64.5
Sed0024444 Sechium edule HOM05D005501 ORTHO05D007485 4.2e-153 545.4 413 67.8
AUR62025959 Chenopodium quinoa HOM05D005501 ORTHO05D007485 2.4e-148 529.6 492 60.6
HPP92_000383 Vanilla planifolia HOM05D005501 ORTHO05D007485 1.0e-146 524.2 426 64.6
Zm00001eb129920 Zea mays HOM05D005501 ORTHO05D007485 3.7e-141 505.8 415 64.6
Pp3c15_10750 Physcomitrium patens HOM05D005501 ORTHO05D007485 3.0e-135 486.1 454 55.7
Mapoly0019s0039 Marchantia polymorpha HOM05D005501 ORTHO05D007485 2.0e-134 483.4 459 55.1
Ciclev10021173m.g Citrus clementina HOM05D005501 ORTHO05D007485 1.8e-132 476.9 414 62.3
AagrBONN_evm.TU.Sc2ySwM_117.1161 Anthoceros agrestis HOM05D005501 ORTHO05D007485 5.9e-131 471.9 465 51.6
SMO271G0013 Selaginella moellendorffii HOM05D005501 ORTHO05D007485 2.9e-130 469.5 451 54.5
Psat0s3070g0040 Pisum sativum HOM05D005501 ORTHO05D007485 7.5e-126 454.9 367 62.4
Thecc.01G378900 Theobroma cacao HOM05D005501 ORTHO05D007485 7.5e-126 454.9 300 77.0
TAR374G0513 Trochodendron aralioides HOM05D005501 ORTHO05D007485 5.2e-119 432.2 308 71.4
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 3.4e-110 402.9 441 50.3
C04p08020 Brassica napus HOM05D005501 ORTHO05D007485 8.3e-109 398.3 294 70.7
Atru.chr5.287 Acer truncatum HOM05D005501 ORTHO05D007485 9.8e-102 374.8 248 77.4
SalBow5G4090 Salvia bowleyana HOM05D005501 ORTHO05D007485 2.9e-93 346.7 219 82.6
PRCOL_00001708 Prasinoderma coloniale HOM05D005501 ORTHO05D007485 5.8e-86 322.4 487 40.2
MCO07G252 Micromonas commoda HOM05D005501 ORTHO05D007485 8.3e-85 318.5 353 50.4
Cre14.g615500 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 4.1e-84 316.2 466 40.3
RcHm_v2.0_Chr1g0349801 Rosa chinensis HOM05D005501 ORTHO05D007485 4.6e-83 312.8 206 76.2
RcHm_v2.0_Chr1g0349851 Rosa chinensis HOM05D005501 ORTHO05D007485 8.6e-82 308.5 315 56.5
SEGI_07028 Sequoiadendron giganteum HOM05D005501 ORTHO05D007485 1.4e-79 301.2 202 72.8
Haze_16794 Corylus avellana HOM05D005501 ORTHO05D007485 3.1e-71 273.5 249 60.2
Dinv32366 Davidia involucrata HOM05D005501 ORTHO05D007485 3.1e-63 246.9 218 65.6
Cre15.g639400 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 5.1e-58 229.6 582 30.8
Haze_26798 Corylus avellana HOM05D005501 ORTHO05D008444 2.3e-50 204.1 323 40.6
Os01g0295900 Oryza sativa ssp. japonica HOM05D005501 ORTHO05D007485 8.4e-45 185.7 121 80.2
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.9e-44 184.5 295 38.3
arahy.Tifrunner.gnm1.ann1.4QW6M0 Arachis hypogaea HOM05D005501 ORTHO05D007485 8.7e-42 175.6 167 54.5
Os12g0485000 Oryza sativa ssp. japonica HOM05D005501 ORTHO05D007485 5.9e-38 162.9 103 81.6
Glyma.01G140002 Glycine max HOM05D005501 ORTHO05D007485 2.7e-35 154.1 112 67.0
EL10Ac2g02806 Beta vulgaris HOM05D005501 ORTHO05D014923 4.6e-35 153.3 163 52.8
EL10Ac9g20646 Beta vulgaris HOM05D005501 ORTHO05D007485 7.4e-33 146.0 148 54.1
SEGI_12424 Sequoiadendron giganteum HOM05D005501 ORTHO05D007485 1.0e-29 135.6 91 76.9
Glyma.01G139900 Glycine max HOM05D005501 ORTHO05D033049 2.7e-27 127.5 71 78.9
BcaC02g12086 Brassica carinata HOM05D005501 ORTHO05D007485 1.5e-22 111.7 76 75.0
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 9.4e-20 102.4 342 27.8
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 9.4e-20 102.4 342 27.5
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 2.7e-19 100.9 342 27.2
arahy.Tifrunner.gnm1.ann1.R3VUJN Arachis hypogaea HOM05D005501 ORTHO05D002299 4.7e-19 100.1 89 58.4
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 3.0e-18 97.4 342 26.9
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 2.6e-17 94.4 343 26.5
RcHm_v2.0_Chr1g0349791 Rosa chinensis HOM05D005501 ORTHO05D007485 2.6e-17 94.4 58 82.8
C04p06200 Brassica napus HOM05D005501 ORTHO05D033049 3.3e-17 94.0 67 64.2
Psat1g143840 Pisum sativum HOM05D005501 ORTHO05D050377 4.4e-17 93.6 127 51.2
BcaC01g05144 Brassica carinata HOM05D005501 ORTHO05D007485 1.2e-14 85.5 60 68.3
Dinv22743 Davidia involucrata HOM05D003336 ORTHO05D003807 1.6e-11 75.1 205 31.2
A05p05300 Brassica napus HOM05D001546 ORTHO05D008648 1.0e-10 72.4 48 66.7
BraA05t19499Z Brassica rapa HOM05D001546 ORTHO05D008648 1.0e-10 72.4 48 66.7
Psat0s3070g0080 Pisum sativum HOM05D005501 ORTHO05D050377 1.4e-10 72.0 57 73.7
RcHm_v2.0_Chr1g0349871 Rosa chinensis HOM05D005501 ORTHO05D007485 2.3e-10 71.2 39 84.6
Nitab4.5_0005460g0060 Nicotiana tabacum HOM05D003336 ORTHO05D003807 3.0e-10 70.9 191 29.3
MBI12_g18799_MAGBIO Magnolia biondii HOM05D005501 ORTHO05D007485 9.8e-09 65.9 36 80.6
arahy.Tifrunner.gnm1.ann1.Z7MJ9S Arachis hypogaea HOM05D005501 ORTHO05D007485 6.3e-08 63.2 73 49.3


User provided reference genes

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