Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 2154.0 1082 100.0
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1493.4 1196 64.6
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1481.1 1201 65.1
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1458.7 1195 63.8
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1447.6 1193 62.2
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1440.6 1200 62.1
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1440.2 1177 62.8
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1439.5 1199 63.4
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1438.7 1194 62.1
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1434.1 1200 61.2
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1396.3 1201 59.5
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1395.2 1189 60.8
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1388.2 1177 60.8
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1382.5 1199 59.3
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1372.8 1199 59.0
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1368.2 1195 58.9
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1361.3 1195 58.5
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1352.0 1186 58.9
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1350.5 1165 59.8
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1344.7 1191 59.0
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1342.0 1174 59.5
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1340.9 1189 58.7
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1340.9 1186 59.8
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1340.5 1191 59.0
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1338.9 1190 58.6
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1338.9 1189 58.4
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1338.9 1149 60.1
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1337.8 1172 59.4
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1337.8 1173 58.7
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1337.4 1189 58.5
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1337.4 1229 57.4
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1337.4 1189 58.6
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1334.3 1172 59.5
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1333.9 1193 57.8
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1333.2 1189 58.4
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1331.6 1270 55.8
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1327.8 1187 58.6
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1325.5 1189 57.9
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1323.9 1182 58.5
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1320.4 1172 58.6
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1316.6 1195 57.4
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1311.6 1162 57.7
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1306.6 1190 56.7
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1306.2 1279 56.0
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1304.7 1200 57.3
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1300.8 1173 57.6
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1300.0 1189 57.4
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1287.7 1200 56.2
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1287.3 1183 57.9
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1287.3 1186 55.9
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1281.5 1182 57.0
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1279.2 1192 56.5
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1278.8 1184 57.2
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1278.5 1190 56.6
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1274.2 1179 56.6
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1272.3 1215 55.3
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1272.3 1231 55.1
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1271.9 1184 57.0
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1267.7 1183 56.9
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1266.5 1189 55.8
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1263.4 1184 56.1
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1260.7 1184 55.7
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1260.4 1185 56.3
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1260.4 1184 56.2
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1259.6 1184 56.3
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1258.8 1199 55.7
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1258.4 1175 55.1
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1247.6 1261 53.1
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1246.9 1170 55.9
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1241.1 1194 54.4
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1238.8 1189 54.6
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1237.6 1190 54.8
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1236.9 1186 54.6
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1234.6 1188 53.8
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1232.6 1169 54.4
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1232.6 1299 52.3
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1231.1 1169 54.6
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1230.3 1169 54.6
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1228.0 1177 55.3
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1224.9 1170 54.3
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1224.2 1189 53.4
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1223.4 1194 52.9
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1218.0 1186 53.5
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1218.0 1171 53.9
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1215.7 1195 53.6
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1212.6 1204 52.2
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1211.1 1218 52.1
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1210.3 1194 52.7
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1197.2 1194 53.1
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1181.4 1135 55.2
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1179.1 1136 54.3
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1164.4 1014 59.5
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1156.0 1194 51.3
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1151.7 943 62.6
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1149.0 999 59.9
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1109.7 1189 49.7
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1102.0 965 59.5
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1101.3 1195 49.2
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1094.3 1188 50.2
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 2.8e-301 1038.9 1156 49.7
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 2.1e-277 959.5 1215 44.3
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 1.4e-268 930.2 1188 44.0
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 4.2e-265 918.7 1174 45.6
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 4.7e-256 888.6 1160 45.5
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 4.1e-252 875.5 1173 40.8
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.4e-246 855.5 710 62.1
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.5e-235 818.9 818 53.5
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.9e-233 813.5 703 59.9
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 8.3e-229 798.1 705 64.0
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.3e-226 790.0 822 52.7
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 7.3e-201 705.3 743 49.7
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 9.0e-183 645.2 1135 37.4
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 2.1e-179 634.0 1063 36.9
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 9.6e-177 625.2 1097 35.8
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.5e-174 617.8 501 65.5
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.1e-167 595.1 545 58.9
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.4e-167 594.0 426 68.3
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 5.7e-161 572.8 567 53.6
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 8.8e-130 469.2 410 57.3
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 5.7e-129 466.5 389 61.2
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 1.3e-101 375.6 584 39.7
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.8e-98 365.2 640 35.9
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 7.3e-92 343.2 253 66.4
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 5.8e-65 253.8 241 53.9
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 5.1e-61 240.7 169 69.2
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.1e-58 233.0 315 42.2
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 6.9e-58 230.3 245 51.0
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 1.8e-53 215.7 203 56.7
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 7.6e-41 173.7 141 63.8
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 2.8e-35 155.2 139 55.4
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 2.2e-27 129.0 162 45.7
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 6.9e-26 124.0 174 45.4
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 4.5e-17 94.7 72 59.7
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 8.5e-16 90.5 70 62.9
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 4.2e-15 88.2 196 34.7
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 5.7e-12 77.8 88 52.3
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 2.8e-11 75.5 82 47.6
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.0e-08 67.0 45 71.1
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 3.8e-08 65.1 95 42.1
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 1.9e-07 62.8 44 63.6
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 1.9e-07 62.8 63 47.6
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 7.2e-07 60.8 128 32.0
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 6.1e-06 57.8 45 55.6


User provided reference genes

Program Settings