Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 0.0e+00 2085.5 1052 100.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.5e-182 643.7 1074 40.7
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.1e-172 611.7 1091 39.8
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.1e-169 601.7 1087 39.5
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.7e-165 587.8 1076 38.4
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 6.9e-164 582.4 970 40.0
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.2e-160 571.6 1075 36.5
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 1.4e-156 558.1 1077 36.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 8.0e-152 542.3 1152 35.9
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 3.3e-150 537.0 1073 35.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.4e-150 535.8 1073 35.9
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 6.3e-149 532.7 1157 34.8
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.0e-147 527.7 1093 37.1
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 5.5e-145 519.6 1107 34.8
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.4e-143 515.0 1087 34.6
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 8.8e-143 512.3 1139 33.9
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 8.8e-143 512.3 1069 35.5
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 6.3e-141 506.1 1122 33.7
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 4.5e-139 500.0 1087 33.3
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.1e-136 491.1 1104 33.2
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 4.7e-136 490.0 1096 33.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.8e-132 478.0 1123 33.4
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 9.1e-132 475.7 1110 33.0
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.0e-130 472.2 1103 33.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 3.8e-130 470.3 1100 32.1
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 3.3e-129 467.2 1090 34.8
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 3.3e-129 467.2 1103 32.2
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 2.8e-128 464.2 1093 31.8
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.4e-126 457.2 1090 32.9
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.2e-124 449.1 1068 32.3
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.7e-123 447.6 1100 32.5
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 3.3e-121 440.7 1053 32.4
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 4.3e-121 440.3 1092 32.0
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 5.6e-121 439.9 1090 31.7
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 8.9e-119 432.6 1084 34.2
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 2.6e-118 431.0 1078 33.6
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 6.0e-115 419.9 1116 32.3
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.7e-114 418.3 1113 31.9
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 6.6e-114 416.4 1047 31.6
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 4.3e-113 413.7 1066 32.1
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.3e-109 402.1 1063 32.9
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.9e-108 398.3 1122 30.8
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 3.2e-108 397.5 1076 30.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.7e-106 391.7 1109 30.6
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.1e-105 389.0 1069 30.7
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.9e-105 388.3 1119 31.2
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 7.3e-105 386.3 580 42.6
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.2e-104 385.6 1116 30.8
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 1.2e-104 385.6 1100 29.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.8e-104 384.4 1174 29.9
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 4.7e-104 383.6 1098 30.1
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 8.1e-104 382.9 1181 30.0
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.8e-103 381.7 1099 30.0
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 6.8e-103 379.8 1087 29.7
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.9e-101 374.4 1090 29.9
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.9e-101 374.4 1085 30.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 8.3e-101 372.9 1071 30.4
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.1e-100 372.5 1115 30.5
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.6e-99 368.6 1125 30.1
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.9e-97 361.7 1135 29.6
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 9.6e-97 359.4 1080 30.8
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.1e-95 355.9 1132 29.2
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 5.8e-94 350.1 1094 29.9
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.8e-93 347.4 1161 30.1
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 4.2e-92 344.0 1069 29.4
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 7.1e-92 343.2 1089 29.6
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.5e-89 334.7 1057 29.2
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 3.1e-87 327.8 1071 29.3
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.3e-87 327.0 1073 29.4
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.6e-86 324.7 1060 29.2
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.3e-85 322.4 1066 29.5
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 4.9e-85 320.5 1069 27.4
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.1e-84 319.3 1170 28.5
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.1e-83 315.1 902 29.5
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.0e-82 312.8 1065 28.3
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 3.0e-82 311.2 825 33.0
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 3.9e-82 310.8 1062 29.4
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.5e-81 308.9 674 36.4
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 5.6e-81 307.0 1085 28.8
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.5e-73 282.3 1045 27.4
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 3.3e-73 281.2 680 32.9
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.4e-71 275.8 1066 27.8
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 9.0e-71 273.1 1046 27.6
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 5.8e-70 270.4 1078 27.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 6.5e-69 266.9 1071 27.4
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.6e-67 262.3 806 28.5
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 8.7e-66 256.5 919 28.2
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.7e-61 242.3 1019 28.4
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 2.7e-59 235.0 1029 25.6
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 5.1e-58 230.7 1029 25.5
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.9e-57 228.8 832 27.8
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.5e-57 228.4 833 27.7
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 2.5e-57 228.4 834 27.8
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 6.9e-55 220.3 1116 24.6
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.2e-52 210.3 518 32.2
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 3.6e-51 208.0 469 30.9
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.0e-50 206.5 709 26.8
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.7e-49 199.9 495 32.9
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.8e-48 198.4 251 45.0
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.4e-47 196.1 336 38.4
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 1.2e-46 193.0 406 33.5
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.3e-45 189.5 386 32.6
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 3.2e-44 184.9 524 31.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 3.2e-44 184.9 932 25.4
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.4e-42 179.5 335 34.3
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 2.6e-38 165.2 301 32.2
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.7e-37 162.5 407 31.9
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.7e-35 154.5 231 42.0
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.0e-35 153.7 181 46.4
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 3.8e-29 134.8 114 53.5
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 8.5e-29 133.7 792 24.9
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.1e-28 133.3 130 46.9
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 1.9e-28 132.5 133 49.6
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 4.2e-28 131.3 130 46.9
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.6e-27 129.4 132 44.7
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.1e-27 129.0 133 45.9
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.4e-26 126.3 159 39.0
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.4e-26 126.3 130 47.7
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.0e-26 125.2 439 29.4
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 4.4e-25 121.3 763 23.9
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.3e-24 119.8 235 36.2
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 2.2e-24 119.0 132 46.2
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 9.1e-23 113.6 347 27.4
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 5.0e-21 107.8 745 25.9
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.0e-21 107.8 441 28.6
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.5e-20 106.3 676 25.0
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 7.2e-20 104.0 756 24.7
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.7e-19 102.1 147 39.5
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 4.7e-19 101.3 301 31.2
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 6.8e-18 97.4 195 43.1
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.5e-17 96.3 322 28.9
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.0e-17 95.9 105 41.9
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 4.4e-17 94.7 378 28.3
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 3.7e-16 91.7 165 39.4
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.1e-15 90.1 1026 22.6
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 5.0e-13 81.3 64 50.0
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.9e-12 79.3 58 58.6
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 3.3e-12 78.6 491 25.7
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.6e-11 75.1 736 24.6
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 3.4e-09 68.6 89 40.4
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 1.8e-07 62.8 182 30.8
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.1e-07 61.6 742 21.4
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 4.6e-06 58.2 425 24.5
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 7.8e-06 57.4 74 43.2


User provided reference genes

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