Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 0.0e+00 1206.0 602 100.0
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 6.7e-204 714.5 624 59.5
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 5.0e-199 698.4 607 61.4
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 1.6e-197 693.3 615 60.8
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 4.6e-197 691.8 613 61.0
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 5.7e-195 684.9 666 55.4
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 7.7e-192 674.5 599 59.3
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 1.4e-190 670.2 617 58.3
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 5.5e-190 668.3 619 58.8
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 9.4e-190 667.5 619 58.8
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 1.1e-187 660.6 615 58.0
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 7.4e-187 657.9 615 57.7
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 4.8e-186 655.2 611 57.6
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 2.0e-184 649.8 626 57.2
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 2.6e-184 649.4 614 56.5
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 2.2e-183 646.4 615 57.2
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 5.5e-182 641.7 613 56.4
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 1.6e-181 640.2 625 56.0
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 7.5e-179 631.3 606 55.4
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 2.2e-178 629.8 615 54.8
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 2.8e-178 629.4 615 55.6
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 3.1e-177 625.9 645 53.8
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 1.3e-175 620.5 615 54.5
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 2.9e-175 619.4 516 61.4
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 3.2e-174 615.9 492 64.8
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 3.2e-174 615.9 603 54.9
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 4.2e-174 615.5 520 59.4
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 9.4e-174 614.4 641 54.0
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 2.1e-173 613.2 647 54.4
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 1.8e-172 610.1 615 55.1
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 2.6e-171 606.3 617 54.6
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 4.4e-171 605.5 542 57.7
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 9.8e-171 604.4 620 54.4
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 4.8e-170 602.1 623 53.6
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 8.3e-170 601.3 621 53.9
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 5.4e-169 598.6 614 54.6
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 7.7e-168 594.7 627 53.9
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 3.2e-166 589.3 613 52.9
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 3.2e-166 589.3 608 54.1
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 5.5e-166 588.6 615 53.0
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 7.2e-166 588.2 612 53.8
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 1.2e-165 587.4 619 54.0
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.6e-165 587.0 631 52.1
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 4.7e-165 585.5 626 52.1
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 4.7e-165 585.5 609 53.0
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 5.2e-164 582.0 616 52.8
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 8.8e-164 581.3 612 53.4
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 5.7e-163 578.6 580 54.0
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 5.4e-161 572.0 651 51.3
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 2.7e-160 569.7 549 54.6
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 7.7e-160 568.2 611 52.9
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 2.5e-158 563.1 635 51.2
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 1.2e-157 560.8 609 50.9
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 1.6e-157 560.5 548 55.3
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 2.1e-157 560.1 603 51.6
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 4.7e-157 558.9 609 51.4
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 2.0e-155 553.5 607 51.6
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 2.6e-155 553.1 634 49.4
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 3.4e-155 552.7 622 50.0
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 4.4e-155 552.4 622 51.0
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 5.7e-155 552.0 619 50.7
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 4.1e-153 545.8 575 50.6
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 5.4e-153 545.4 517 56.5
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 7.0e-153 545.0 607 50.6
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 3.5e-152 542.7 568 53.7
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 7.8e-152 541.6 557 53.1
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 3.0e-151 539.7 588 50.7
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 6.6e-151 538.5 605 50.1
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 3.3e-150 536.2 621 51.0
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 2.1e-149 533.5 609 48.9
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 4.7e-149 532.3 562 52.0
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 8.0e-149 531.6 608 48.7
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 5.2e-148 528.9 610 48.9
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 1.2e-147 527.7 616 49.0
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 3.7e-146 522.7 600 48.3
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 8.3e-146 521.5 616 48.7
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 5.4e-145 518.8 636 47.8
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 6.0e-144 515.4 604 48.0
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 2.3e-143 513.5 545 51.4
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 4.3e-142 509.2 674 45.0
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 3.6e-141 506.1 547 50.6
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 4.4e-139 499.2 603 47.8
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 2.2e-138 496.9 604 46.9
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 2.4e-137 493.4 536 50.6
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 1.6e-136 490.7 631 45.6
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 1.3e-135 487.6 566 48.9
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 1.7e-135 487.3 536 50.4
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 3.9e-135 486.1 632 46.2
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 1.5e-134 484.2 514 50.0
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 4.3e-134 482.6 632 47.2
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 6.2e-133 478.8 457 55.1
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 4.9e-130 469.2 571 48.5
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 4.1e-129 466.1 494 50.8
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 3.5e-128 463.0 633 44.2
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 1.1e-124 451.4 561 45.1
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 3.1e-116 423.3 481 47.2
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 1.5e-115 421.0 401 54.1
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 4.6e-88 329.7 450 44.0
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 7.7e-83 312.4 530 36.6
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 5.0e-82 309.7 576 37.8
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 3.7e-77 293.5 462 39.0
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 1.7e-74 284.6 541 34.9
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 1.2e-67 261.9 323 51.4
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.8e-55 221.5 318 38.4
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 1.2e-54 218.8 193 60.6
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 8.6e-50 202.6 188 55.3
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 1.4e-44 185.3 584 27.9
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 1.4e-31 142.1 437 28.4
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 2.1e-24 118.2 123 51.2
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.4e-23 115.5 575 23.5
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 5.8e-22 110.2 379 26.9
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 7.8e-19 99.8 124 47.6
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 7.8e-19 99.8 124 47.6
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.9e-18 97.4 124 46.8
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.9e-18 97.4 124 46.8
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 3.6e-16 90.9 61 73.8
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.3e-13 82.4 112 40.2
Psat5g086560 Pisum sativum HOM05D001470 ORTHO05D006756 1.9e-09 68.6 279 24.0
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 4.3e-09 67.4 203 30.0
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 9.6e-09 66.2 289 24.2
Cre12.g521200 Chlamydomonas reinhardtii HOM05D004977 ORTHO05D006454 9.6e-09 66.2 358 22.1
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 2.1e-08 65.1 348 23.6
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 2.1e-08 65.1 348 23.6
Ca_16563_v3 Cicer arietinum L. HOM05D001470 ORTHO05D006756 2.8e-08 64.7 271 24.7
Pp3c22_21030 Physcomitrium patens HOM05D004977 ORTHO05D006454 2.8e-08 64.7 358 22.6
Medtr3g088120 Medicago truncatula HOM05D001470 ORTHO05D006756 3.6e-08 64.3 247 25.1
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 8.1e-08 63.2 289 23.9
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 1.1e-07 62.8 348 22.7
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 1.4e-07 62.4 289 23.2
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 1.4e-07 62.4 289 23.2
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 4.0e-07 60.8 348 22.1
HPP92_002246 Vanilla planifolia HOM05D004977 ORTHO05D006454 4.0e-07 60.8 349 23.8
Lj1g0008455 Lotus japonicus HOM05D001470 ORTHO05D006756 5.2e-07 60.5 241 24.5
Zm00001eb256550 Zea mays HOM05D001470 ORTHO05D006756 5.2e-07 60.5 261 24.5
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 9.0e-07 59.7 278 23.0
Lalb_Chr11g0065951 Lupinus albus HOM05D001470 ORTHO05D006756 9.0e-07 59.7 241 24.5
AUR62019054 Chenopodium quinoa HOM05D001470 ORTHO05D006756 1.2e-06 59.3 252 24.6
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 1.2e-06 59.3 347 20.7
SGA_v2.0_scaffold7G04011 Striga asiatica HOM05D004977 ORTHO05D006454 1.5e-06 58.9 370 23.2
THA.LOC104800207 Tarenaya hassleriana HOM05D001470 ORTHO05D006756 1.5e-06 58.9 254 24.4
AUR62014313 Chenopodium quinoa HOM05D001470 ORTHO05D006756 2.0e-06 58.5 252 24.6
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 3.4e-06 57.8 93 40.9
BcaB05g25051 Brassica carinata HOM05D001470 ORTHO05D006756 4.4e-06 57.4 274 22.3
Os02g0775200 Oryza sativa ssp. japonica HOM05D001470 ORTHO05D006756 4.4e-06 57.4 252 25.4
ATR0709G002 Amborella trichopoda HOM05D001470 ORTHO05D006756 9.9e-06 56.2 265 24.9
SMO329G0082 Selaginella moellendorffii HOM05D001470 ORTHO05D006756 9.9e-06 56.2 243 23.9


User provided reference genes

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