Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 3.7e-312 1073.9 545 100.0
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.0e-182 644.0 558 60.9
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 2.2e-177 626.3 549 58.8
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.2e-172 610.5 535 58.9
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 4.1e-168 595.5 569 55.2
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 7.0e-168 594.7 525 58.7
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.7e-167 592.8 545 57.1
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 4.5e-167 592.0 552 57.1
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 8.9e-163 577.8 554 55.8
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.9e-157 560.1 551 54.1
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.0e-155 554.3 531 54.0
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.8e-155 553.5 523 56.2
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 4.9e-153 545.4 527 53.5
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 4.1e-152 542.3 537 54.6
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 7.8e-151 538.1 477 58.7
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.1e-149 534.3 530 52.1
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.6e-148 530.4 535 52.5
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 6.2e-148 528.5 540 52.2
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 8.0e-148 528.1 532 52.8
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.1e-144 517.7 536 53.2
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 3.2e-144 516.2 549 50.8
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 7.0e-144 515.0 541 51.4
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 2.7e-143 513.1 537 50.3
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.3e-142 510.0 530 50.4
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 5.0e-142 508.8 532 49.6
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.5e-141 507.3 530 50.0
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 1.9e-141 506.9 536 52.6
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.5e-141 506.5 557 48.3
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.3e-141 506.1 530 50.2
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 9.5e-141 504.6 548 50.7
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.2e-140 504.2 527 50.5
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 3.6e-140 502.7 530 50.2
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 2.0e-138 496.9 555 49.4
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.6e-138 496.5 555 49.2
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.2e-137 493.4 540 48.3
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.7e-135 486.5 550 47.6
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 4.6e-135 485.7 541 47.1
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.0e-134 484.6 532 48.5
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 8.6e-134 481.5 541 47.9
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.5e-133 479.9 548 48.2
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.3e-133 479.2 542 48.0
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.1e-132 476.9 543 47.5
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 8.1e-132 474.9 542 47.0
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.5e-130 470.7 527 48.0
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 2.6e-130 469.9 521 48.6
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.1e-128 464.5 541 47.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.7e-127 459.9 546 46.3
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 1.7e-126 457.2 507 48.3
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 3.0e-126 456.4 537 49.0
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.1e-125 454.5 541 47.3
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.5e-125 454.1 527 47.6
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-124 451.1 525 47.2
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 3.6e-124 449.5 541 47.1
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 6.9e-123 445.3 363 60.6
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.0e-122 443.7 504 47.6
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 5.8e-122 442.2 547 45.9
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 7.6e-122 441.8 410 56.3
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.9e-121 439.1 553 45.4
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 2.4e-120 436.8 561 44.0
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 3.2e-120 436.4 529 44.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 9.3e-120 434.9 531 45.4
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.6e-119 434.1 547 45.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 2.1e-119 433.7 544 45.2
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 4.6e-119 432.6 539 47.5
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 5.1e-118 429.1 534 44.6
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 5.1e-118 429.1 558 44.4
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 4.3e-117 426.0 537 43.8
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.6e-116 424.1 528 45.3
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.6e-116 424.1 522 45.4
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 3.6e-116 422.9 542 44.5
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 6.2e-116 422.2 524 44.8
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 6.2e-116 422.2 535 45.2
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 2.4e-115 420.2 539 44.2
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 6.9e-115 418.7 528 44.9
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 3.8e-113 412.9 556 41.5
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 2.4e-112 410.2 557 43.1
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.1e-111 407.1 485 48.9
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 4.6e-111 406.0 516 45.2
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 2.3e-110 403.7 541 42.9
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.5e-109 400.2 550 41.6
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 7.4e-109 398.7 495 46.1
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 7.4e-109 398.7 548 42.0
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 9.3e-104 381.7 442 46.6
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 2.3e-102 377.1 529 41.6
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 9.0e-99 365.2 545 42.0
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 2.0e-98 364.0 479 43.2
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 8.4e-97 358.6 375 52.8
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.6e-92 344.4 339 51.6
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 8.2e-92 342.0 549 37.9
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 9.4e-88 328.6 363 49.9
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 2.3e-86 323.9 382 45.8
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.7e-84 316.6 522 38.9
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 4.5e-82 309.7 518 37.3
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 2.9e-81 307.0 522 36.6
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 6.1e-79 299.3 250 59.6
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 8.8e-78 295.4 516 36.6
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.7e-76 290.0 448 40.2
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.1e-75 286.6 238 58.8
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.4e-72 278.1 598 31.6
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 2.2e-68 264.2 311 48.9
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.3e-65 255.0 315 45.1
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.4e-62 245.0 642 28.7
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.0e-61 241.1 260 48.5
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.1e-59 235.3 365 40.0
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 2.8e-44 184.1 156 59.0
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 1.2e-42 178.7 665 25.4
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 8.9e-38 162.5 117 65.8
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 2.3e-33 147.9 299 35.1
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 5.0e-33 146.7 117 60.7
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.5e-32 145.2 111 59.5
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.3e-32 144.1 117 55.6
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 5.6e-32 143.3 198 42.4
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 2.1e-31 141.4 111 58.6
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 3.6e-31 140.6 139 48.9
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 5.2e-30 136.7 100 63.0
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.5e-29 135.2 105 57.1
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.4e-29 134.0 110 57.3
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 7.5e-29 132.9 91 61.5
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 2.9e-28 131.0 149 49.0
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 2.3e-25 121.3 87 56.3
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 3.9e-25 120.6 95 55.8
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 5.1e-25 120.2 98 49.0
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 8.6e-25 119.4 503 25.8
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 2.1e-23 114.8 82 59.8
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 9.9e-21 105.9 95 54.7
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 9.9e-21 105.9 87 55.2
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.2e-20 104.8 102 50.0
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.1e-18 98.2 79 59.5
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 3.5e-18 97.4 80 58.8
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 4.6e-18 97.1 126 40.5
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.6e-18 97.1 224 33.0
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.3e-16 90.5 87 46.0
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.6e-15 88.6 90 50.0
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 6.2e-15 86.7 86 53.5
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 8.9e-14 82.8 54 63.0
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.7e-12 78.6 147 32.7
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.8e-12 77.4 202 30.7
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.4e-12 76.6 69 43.5
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 5.4e-11 73.6 69 47.8
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 7.1e-11 73.2 145 34.5
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 3.5e-10 70.9 98 34.7
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 7.8e-10 69.7 94 40.4
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.9e-09 67.4 71 43.7
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.5e-08 65.5 57 50.9
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 2.5e-08 64.7 92 43.5
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 7.3e-08 63.2 47 57.4
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-07 62.0 94 37.2
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-07 62.0 94 37.2
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.6e-07 60.8 114 27.2
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 8.1e-07 59.7 44 47.7
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 3.1e-06 57.8 63 54.0


User provided reference genes

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