Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu039462.1 Olea europaea HOM05D001647 ORTHO05D001191 6.1e-46 187.2 99 100.0
Cc07_g01540 Coffea canephora HOM05D001647 ORTHO05D001191 1.5e-20 102.8 72 80.6
SalBow1G0849 Salvia bowleyana HOM05D001647 ORTHO05D001191 1.1e-18 96.7 84 67.9
CSS0005156 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 3.2e-18 95.1 74 75.7
SGA_v2.0_scaffold42G16007 Striga asiatica HOM05D001647 ORTHO05D001191 1.2e-17 93.2 80 70.0
SGA_v2.0_scaffold2G01173 Striga asiatica HOM05D001647 ORTHO05D001191 2.7e-17 92.0 61 83.6
Dinv33429 Davidia involucrata HOM05D001647 ORTHO05D001191 1.9e-15 85.9 84 67.9
Hma1.2p1_1747F.1_g300520 Hydrangea macrophylla HOM05D001647 ORTHO05D001191 1.9e-15 85.9 62 82.3
Actinidia36122 Actinidia chinensis HOM05D001647 ORTHO05D001191 2.1e-14 82.4 91 62.6
Lsat_1_v5_gn_0_47341 Lactuca sativa HOM05D001647 ORTHO05D001191 2.1e-14 82.4 74 66.2
ECA246G2376 Erigeron canadensis HOM05D001647 ORTHO05D001191 2.8e-14 82.0 78 61.5
vmacro05874 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 2.8e-14 82.0 75 66.7
DCAR_021729 Daucus carota HOM05D000709 ORTHO05D001191 3.6e-14 81.6 61 78.7
unitig_52.g17659 Utricularia gibba HOM05D001647 ORTHO05D001191 3.6e-14 81.6 61 75.4
SHI16456 Sapria himalayana HOM05D001647 ORTHO05D001191 8.1e-14 80.5 93 54.8
Phvul.004G005000 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 1.1e-13 80.1 101 51.5
BcaC06g30978 Brassica carinata HOM05D001647 ORTHO05D001191 1.4e-13 79.7 86 61.6
AT3G27550 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 1.8e-13 79.3 92 62.0
C07p36660 Brassica napus HOM05D001647 ORTHO05D001191 1.8e-13 79.3 86 61.6
BolC7t44184H Brassica oleracea HOM05D000088 ORTHO05D001191 1.8e-13 79.3 86 61.6
Migut.H00066 Erythranthe guttata HOM05D001647 ORTHO05D001191 3.1e-13 78.6 54 79.6
Lj7A600G51 Lonicera japonica HOM05D001647 ORTHO05D001191 3.1e-13 78.6 59 78.0
BcaC03g17472 Brassica carinata HOM05D001647 ORTHO05D001191 5.2e-13 77.8 88 62.5
A06p41080 Brassica napus HOM05D001647 ORTHO05D001191 5.2e-13 77.8 84 59.5
BraA06t27031Z Brassica rapa HOM05D001647 ORTHO05D001191 5.2e-13 77.8 84 59.5
PGR142G3896 Punica granatum HOM05D001647 ORTHO05D001191 5.2e-13 77.8 45 93.3
Carub.0005s0598 Capsella rubella HOM05D001647 ORTHO05D001191 6.8e-13 77.4 74 68.9
HanXRQChr17g0548611 Helianthus annuus HOM05D001647 ORTHO05D001191 6.8e-13 77.4 74 66.2
VMungo0464G0398 Vigna mungo HOM05D001647 ORTHO05D001191 6.8e-13 77.4 101 49.5
GSVIVG01032387001 Vitis vinifera HOM05D001647 ORTHO05D001191 6.8e-13 77.4 45 93.3
arahy.Tifrunner.gnm1.ann1.S0UJPA Arachis hypogaea HOM05D001647 ORTHO05D001191 8.9e-13 77.0 60 73.3
BcaB07g30153 Brassica carinata HOM05D001647 ORTHO05D001191 8.9e-13 77.0 87 59.8
Potri.001G343700 Populus trichocarpa HOM05D001647 ORTHO05D001191 8.9e-13 77.0 45 93.3
Sabra16G0223000 Salix brachista HOM05D001647 ORTHO05D001191 8.9e-13 77.0 45 93.3
BcaC06g33804 Brassica carinata HOM05D001647 ORTHO05D001191 1.2e-12 76.6 87 58.6
COL.COLO4_29168 Corchorus olitorius HOM05D000709 ORTHO05D001191 1.2e-12 76.6 100 53.0
Nn3g16694 Nelumbo nucifera HOM05D001647 ORTHO05D001191 1.5e-12 76.3 70 65.7
C02p54320 Brassica napus HOM05D001812 ORTHO05D001191 2.0e-12 75.9 99 55.6
Eucgr.I01734 Eucalyptus grandis HOM05D001647 ORTHO05D001191 2.0e-12 75.9 45 93.3
Glyma.19G003000 Glycine max HOM05D001647 ORTHO05D001191 2.0e-12 75.9 101 52.5
Glyma.05G002800 Glycine max HOM05D001647 ORTHO05D001191 2.6e-12 75.5 68 69.1
MBI16_g05784_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 2.6e-12 75.5 86 57.0
MSTRG.3140 Avicennia marina HOM05D001647 ORTHO05D001191 3.4e-12 75.1 79 60.8
BolC2t11499H Brassica oleracea HOM05D001647 ORTHO05D001191 3.4e-12 75.1 89 59.6
Sp2g16720 Schrenkiella parvula HOM05D001647 ORTHO05D001191 3.4e-12 75.1 89 58.4
Atru.chr6.2421 Acer truncatum HOM05D001647 ORTHO05D001191 4.4e-12 74.7 45 88.9
AL5G16970 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 4.4e-12 74.7 45 91.1
arahy.Tifrunner.gnm1.ann1.BA4K4E Arachis hypogaea HOM05D001647 ORTHO05D001191 4.4e-12 74.7 58 74.1
A02p35540 Brassica napus HOM05D001647 ORTHO05D001191 4.4e-12 74.7 45 91.1
BraA02t08556Z Brassica rapa HOM05D001647 ORTHO05D001191 4.4e-12 74.7 45 91.1
CARHR148930 Cardamine hirsuta HOM05D001647 ORTHO05D001191 4.4e-12 74.7 83 57.8
CDE10G0781 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 4.4e-12 74.7 57 73.7
CDE10G1164 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 4.4e-12 74.7 57 73.7
Ciclev10014676m.g Citrus clementina HOM05D001647 ORTHO05D001191 4.4e-12 74.7 83 60.2
Thhalv10004117m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 4.4e-12 74.7 45 91.1
MD09G1023500 Malus domestica HOM05D001647 ORTHO05D001191 5.8e-12 74.3 88 55.7
Psat1g053800 Pisum sativum HOM05D001647 ORTHO05D001191 5.8e-12 74.3 74 63.5
Duzib147G0348 Durio zibethinus HOM05D001647 ORTHO05D001191 7.5e-12 73.9 61 75.4
Manes.15G151600 Manihot esculenta HOM05D001647 ORTHO05D001191 7.5e-12 73.9 55 76.4
THA.LOC104823954 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 7.5e-12 73.9 45 88.9
Ca_04144_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 9.9e-12 73.6 45 86.7
Thecc.04G019000 Theobroma cacao HOM05D001647 ORTHO05D001191 9.9e-12 73.6 62 72.6
TPR.G31951 Trifolium pratense HOM05D001647 ORTHO05D001191 9.9e-12 73.6 53 79.2
Aa31LG2G5110 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.3e-11 73.2 45 86.7
Cpa.g.sc2900.3 Carica papaya HOM05D001647 ORTHO05D001191 1.3e-11 73.2 43 88.4
Gorai.012G064900 Gossypium raimondii HOM05D001647 ORTHO05D001191 1.7e-11 72.8 45 86.7
ATR0824G238 Amborella trichopoda HOM05D001647 ORTHO05D001191 2.2e-11 72.4 45 86.7
Gohir.A05G355000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 2.2e-11 72.4 88 55.7
Gohir.D04G058200 Gossypium hirsutum HOM05D001647 ORTHO05D001191 2.2e-11 72.4 88 55.7
MD17G1023000 Malus domestica HOM05D001647 ORTHO05D001191 2.9e-11 72.0 88 55.7
TWI56G0370 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 6.4e-11 70.9 45 82.2
Medtr6g004480 Medicago truncatula HOM05D001647 ORTHO05D001191 1.1e-10 70.1 49 77.6
QL02p074109 Quercus lobata HOM05D001647 ORTHO05D001191 1.1e-10 70.1 88 52.3
Sc18g0005250 Simmondsia chinensis HOM05D001647 ORTHO05D001191 1.1e-10 70.1 45 82.2
Haze_14755 Corylus avellana HOM05D000709 ORTHO05D001191 1.9e-10 69.3 46 80.4
Peaxi162Scf00700g00436 Petunia axillaris HOM05D001647 ORTHO05D001191 1.9e-10 69.3 73 58.9
CARHR148920 Cardamine hirsuta HOM05D001647 ORTHO05D001191 2.4e-10 68.9 43 88.4
CiPaw.04G029400 Carya illinoinensis HOM05D000709 ORTHO05D001191 3.2e-10 68.6 45 82.2
Nitab4.5_0002077g0020 Nicotiana tabacum HOM05D001647 ORTHO05D001191 3.2e-10 68.6 52 75.0
Solyc07g047900.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 3.2e-10 68.6 52 75.0
Sopen07g024330 Solanum pennellii HOM05D001647 ORTHO05D001191 3.2e-10 68.6 52 75.0
PGSC0003DMG400006153 Solanum tuberosum HOM05D001647 ORTHO05D001191 3.2e-10 68.6 52 75.0
CANSAT64G2892 Cannabis sativa HOM05D001647 ORTHO05D001191 4.1e-10 68.2 82 54.9
SEGI_39124 Sequoiadendron giganteum HOM05D001647 ORTHO05D001191 9.2e-10 67.0 54 68.5
AUR62016795 Chenopodium quinoa HOM05D001647 ORTHO05D001191 1.2e-09 66.6 68 58.8
Nitab4.5_0003267g0020 Nicotiana tabacum HOM05D001647 ORTHO05D001191 1.2e-09 66.6 57 68.4
Ah.01g006080 Amaranthus hybridus HOM05D001647 ORTHO05D001191 2.1e-09 65.9 45 77.8
EL10Ac9g21672 Beta vulgaris HOM05D001647 ORTHO05D001191 2.7e-09 65.5 45 77.8
PSO063G0624 Papaver somniferum HOM05D001647 ORTHO05D001191 2.7e-09 65.5 73 57.5
CAN.G404.63 Capsicum annuum HOM05D001647 ORTHO05D001191 6.0e-09 64.3 75 58.7
AUR62010426 Chenopodium quinoa HOM05D001647 ORTHO05D001191 7.8e-09 63.9 76 53.9
Os05g0145300 Oryza sativa ssp. japonica HOM05D001647 ORTHO05D001191 1.0e-08 63.5 45 75.6
PSO067G0082 Papaver somniferum HOM05D001647 ORTHO05D001191 1.0e-08 63.5 73 56.2
Aqoxy5G03747 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 1.7e-08 62.8 59 62.7
Zm00001eb354360 Zea mays HOM05D001647 ORTHO05D001191 1.7e-08 62.8 66 56.1
CSS0049659 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 1.9e-07 59.3 56 67.9
Zm00001eb417950 Zea mays HOM05D001647 ORTHO05D001191 1.9e-07 59.3 70 48.6
FvH4_6g51690 Fragaria vesca HOM05D001647 ORTHO05D001191 1.2e-06 56.6 53 60.4
FAN02G3474 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.2e-06 56.6 53 60.4
FAN05G1297 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.2e-06 56.6 53 60.4
FAN09G0821 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.2e-06 56.6 53 60.4
FAN14G0654 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.2e-06 56.6 53 60.4
FAN14G0999 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.2e-06 56.6 53 60.4
RcHm_v2.0_Chr2g0173221 Rosa chinensis HOM05D001647 ORTHO05D001191 1.6e-06 56.2 53 60.4
HPP92_000950 Vanilla planifolia HOM05D001647 ORTHO05D001191 6.2e-06 54.3 54 61.1


User provided reference genes

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