Gene: COL.COLO4_29168

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_29168
  • Transcript Identifier COL.rna27885
  • Gene Type Coding gene
  • Location AWUE01020253.1 : 23301-31342 : positive

Gene Family Information

  • ID HOM05D000709
  • #Genes/#Species 810/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna27885
  • GenBank OMO69266.1
  • id gene29140
  • gene_name COLO4_29168
  • uniprot A0A1R3HFX2

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0140040
ISO
PLAZA Integrative Orthologymitochondrial polycistronic RNA processing AT3G27550
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing AT3G27550
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT3G27550
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G27550
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT3G27550

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003700
ISO
PLAZA Homology (enrichment)DNA-binding transcription factor activity HOM05D000709

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G27550

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040286 CRM domain-containing protein At3g25440-like
IPR001890 RNA-binding, CRM domain
IPR003441 NAC domain
IPR036093 NAC domain superfamily
IPR035920 YhbY-like superfamily
Mapman id Description
15.5.17 RNA biosynthesis.transcriptional regulation.transcription factor (NAC)
16.11.4.2.7 RNA processing.organelle machinery.pre-mRNA splicing.mitochondrial RNA splicing.splicing factor (CFM9)