Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 3.9e-235 817.8 423 100.0
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.2e-220 769.6 423 92.4
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 1.0e-219 766.5 423 92.2
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.0e-219 766.5 423 92.2
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 1.2e-218 763.1 423 91.7
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.6e-218 761.9 419 92.1
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.2e-215 753.1 423 90.8
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 4.5e-215 751.1 423 91.3
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 8.6e-214 746.9 422 90.3
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.9e-213 745.7 420 89.3
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.2e-212 743.0 420 88.8
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 2.8e-212 741.9 423 88.7
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.8e-211 739.2 423 88.7
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 3.0e-211 738.4 422 88.6
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 5.2e-211 737.6 422 87.9
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 8.8e-211 736.9 422 89.1
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.0e-210 735.7 423 88.4
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.0e-210 735.7 422 89.8
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 2.6e-210 735.3 419 88.1
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.7e-210 734.2 420 88.3
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 7.5e-210 733.8 419 89.0
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 9.8e-210 733.4 421 88.8
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 9.8e-210 733.4 421 88.8
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 9.8e-210 733.4 421 88.6
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.3e-209 733.0 422 88.4
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.2e-209 732.3 420 88.1
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 2.8e-209 731.9 423 87.0
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.8e-209 731.9 423 87.5
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 4.9e-209 731.1 422 87.4
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 6.3e-209 730.7 419 87.8
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 6.3e-209 730.7 422 88.6
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 6.3e-209 730.7 422 87.4
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 8.3e-209 730.3 422 87.2
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 8.3e-209 730.3 419 89.0
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 1.4e-208 729.6 420 87.9
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 1.8e-208 729.2 422 87.2
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.8e-208 729.2 419 89.0
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.4e-208 728.8 422 87.4
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 3.1e-208 728.4 421 88.1
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 3.1e-208 728.4 419 88.5
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 3.1e-208 728.4 423 87.7
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 3.1e-208 728.4 422 88.2
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 3.1e-208 728.4 419 89.0
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 3.1e-208 728.4 419 88.5
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 4.1e-208 728.0 422 87.2
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 7.0e-208 727.2 420 87.9
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 7.0e-208 727.2 422 86.5
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 9.2e-208 726.9 431 86.3
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.2e-207 726.5 419 88.8
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.2e-207 726.5 422 89.1
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.6e-207 726.1 422 88.4
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 3.5e-207 724.9 422 87.0
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 7.8e-207 723.8 420 87.1
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 7.8e-207 723.8 422 87.7
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.3e-206 723.0 420 86.7
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.3e-206 723.0 422 86.5
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.7e-206 722.6 422 86.7
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 2.3e-206 722.2 420 86.9
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.3e-206 722.2 420 86.7
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 3.8e-206 721.5 422 86.7
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 3.8e-206 721.5 423 86.3
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 5.0e-206 721.1 423 87.0
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 6.6e-206 720.7 420 86.9
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 6.6e-206 720.7 420 86.7
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 6.6e-206 720.7 420 86.9
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 6.6e-206 720.7 423 85.6
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 1.1e-205 719.9 419 86.6
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.1e-205 719.9 423 86.8
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.9e-205 719.2 419 86.2
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.9e-205 719.2 422 86.5
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.9e-205 719.2 423 85.6
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 2.5e-205 718.8 422 86.7
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.5e-205 718.8 423 86.8
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 3.3e-205 718.4 422 86.5
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 3.3e-205 718.4 422 86.3
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.3e-205 718.4 419 87.6
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.3e-205 718.4 434 85.9
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 3.3e-205 718.4 423 88.2
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 4.3e-205 718.0 422 86.3
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 4.3e-205 718.0 422 86.3
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 4.3e-205 718.0 420 86.2
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 5.6e-205 717.6 422 86.7
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 7.3e-205 717.2 422 85.8
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 9.5e-205 716.8 422 86.5
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 9.5e-205 716.8 423 85.3
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.2e-204 716.5 420 86.4
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 86.5
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 1.6e-204 716.1 422 86.0
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.6e-204 716.1 438 84.7
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 2.8e-204 715.3 422 85.8
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 2.8e-204 715.3 431 85.6
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 3.6e-204 714.9 420 85.7
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 4.7e-204 714.5 471 79.4
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 4.7e-204 714.5 471 79.4
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 6.1e-204 714.1 422 86.0
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 6.1e-204 714.1 422 86.0
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 6.1e-204 714.1 419 86.4
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.4e-203 713.0 423 85.3
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.4e-203 713.0 419 86.6
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.8e-203 712.6 428 86.9
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 1.8e-203 712.6 423 85.6
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 2.3e-203 712.2 423 85.1
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 2.3e-203 712.2 453 83.4
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 4.0e-203 711.4 423 84.9
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 5.2e-203 711.1 420 85.2
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.2e-202 709.9 418 85.2
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 85.4
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 3.4e-202 708.4 424 85.1
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 3.4e-202 708.4 422 85.3
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 3.4e-202 708.4 423 86.8
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 4.4e-202 708.0 419 85.4
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 5.7e-202 707.6 440 83.0
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.2e-201 705.7 452 81.9
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 2.2e-201 705.7 419 85.2
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 4.9e-201 704.5 425 84.7
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 5.4e-200 701.0 423 84.6
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.6e-196 689.5 423 84.4
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.5e-194 682.9 429 81.6
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 2.4e-192 675.6 388 87.9
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 9.2e-192 673.7 469 78.3
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 1.3e-190 669.8 502 71.7
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.3e-190 669.1 412 83.3
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.5e-189 665.6 421 82.7
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 8.1e-188 660.6 423 83.7
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 4.0e-187 658.3 389 85.6
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 5.2e-187 657.9 374 87.4
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 1.1e-184 650.2 378 84.9
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.4e-184 649.0 417 81.3
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.9e-181 639.4 363 88.2
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.2e-180 636.7 373 85.5
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 2.9e-177 625.5 434 74.4
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 8.4e-177 624.0 405 77.8
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 3.8e-169 598.6 418 72.2
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.4e-168 596.7 415 73.7
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.9e-165 586.3 410 75.1
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.1e-163 580.5 334 86.2
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.3e-158 562.8 310 91.9
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.9e-149 533.1 422 65.6
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 9.0e-147 524.2 396 65.9
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 1.3e-145 520.4 396 67.4
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 1.4e-136 490.3 280 90.4
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.1e-135 486.5 459 60.8
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.0e-134 484.2 282 83.7
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.2e-130 470.7 392 67.3
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 8.2e-124 448.0 260 86.9
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.0e-118 431.0 243 90.9
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 2.4e-107 393.3 236 79.7
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.1e-103 380.2 225 82.2
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.5e-98 362.8 244 73.8
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 6.6e-97 358.6 205 88.8
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 6.4e-84 315.5 288 61.5
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-73 281.2 293 51.9
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 6.8e-70 268.9 207 68.1
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 1.5e-64 251.1 147 84.4
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 1.1e-59 235.0 191 61.3
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 5.8e-53 212.6 134 75.4
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 3.5e-50 203.4 181 66.3
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 2.6e-45 187.2 119 73.9
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 7.6e-45 185.7 114 89.5
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.3e-40 170.2 150 64.0
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 2.6e-37 160.6 287 35.9
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 8.4e-36 155.6 109 71.6
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 7.1e-35 152.5 157 59.2
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 9.3e-35 152.1 157 58.6
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 6.5e-28 129.4 178 38.8
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 4.2e-27 126.7 82 74.4
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 3.7e-23 113.6 129 51.2
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.2e-21 108.6 69 76.8
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 2.8e-15 87.4 100 52.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 4.1e-14 83.6 49 89.8
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 5.3e-14 83.2 50 92.0
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 6.5e-12 76.3 40 97.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.6e-10 71.6 113 39.8
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 2.7e-10 70.9 37 91.9
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.6e-10 70.5 111 39.6
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 4.4e-08 63.5 60 51.7
HanXRQChr15g0475161 Helianthus annuus HOM05D004007 ORTHO05D222506 3.1e-06 57.4 34 82.4
Cfa022239 Carpinus fangiana HOM05D002061 ORTHO05D121718 4.1e-06 57.0 319 22.6
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 7.0e-06 56.2 370 25.7


User provided reference genes

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