Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 7.8e-69 263.8 150 100.0
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 4.3e-51 204.9 150 78.0
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.2e-23 112.8 97 64.9
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.9e-23 112.5 100 64.0
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.9e-23 112.5 100 64.0
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 4.9e-23 111.7 100 63.0
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 7.1e-22 107.8 99 63.6
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.2e-21 107.1 97 62.9
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.2e-21 107.1 173 46.8
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.8e-20 103.2 136 50.0
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 5.1e-20 101.7 103 56.3
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 6.7e-20 101.3 96 59.4
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 8.7e-20 100.9 96 59.4
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.9e-19 99.8 96 58.3
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 1.9e-19 99.8 100 59.0
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.9e-19 99.8 101 58.4
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 3.3e-19 99.0 107 55.1
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 4.3e-19 98.6 96 56.2
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 4.3e-19 98.6 114 52.6
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 5.7e-19 98.2 99 57.6
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 5.7e-19 98.2 108 54.6
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 7.4e-19 97.8 100 59.0
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 7.4e-19 97.8 102 57.8
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 7.4e-19 97.8 107 56.1
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 9.7e-19 97.4 97 60.8
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.6e-18 96.7 100 57.0
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.6e-18 96.7 101 56.4
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.2e-18 96.3 104 56.7
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.8e-18 95.9 96 58.3
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 2.8e-18 95.9 97 59.8
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 3.7e-18 95.5 104 53.8
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 3.7e-18 95.5 76 65.8
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 4.8e-18 95.1 107 57.0
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.8e-18 95.1 96 55.2
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.8e-18 95.1 96 55.2
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.8e-18 95.1 96 57.3
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 6.3e-18 94.7 113 50.4
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 6.3e-18 94.7 113 50.4
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 6.3e-18 94.7 113 50.4
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 6.3e-18 94.7 111 52.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 6.3e-18 94.7 80 65.0
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 6.3e-18 94.7 104 56.7
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 8.2e-18 94.4 111 52.3
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 8.2e-18 94.4 107 54.2
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 8.2e-18 94.4 59 76.3
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.1e-17 94.0 96 58.3
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 1.1e-17 94.0 101 54.5
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.4e-17 93.6 115 50.4
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.4e-17 93.6 112 54.5
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.8e-17 93.2 109 51.4
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 1.8e-17 93.2 104 54.8
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.8e-17 93.2 59 76.3
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 1.8e-17 93.2 107 53.3
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 1.8e-17 93.2 103 54.4
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 2.4e-17 92.8 100 56.0
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.4e-17 92.8 98 55.1
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.4e-17 92.8 96 54.2
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 2.4e-17 92.8 106 53.8
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.4e-17 92.8 67 71.6
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.1e-17 92.4 107 53.3
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 3.1e-17 92.4 103 53.4
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 3.1e-17 92.4 110 50.9
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.1e-17 92.0 96 56.2
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 4.1e-17 92.0 198 50.5
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 4.1e-17 92.0 105 52.4
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 5.3e-17 91.7 107 51.4
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 5.3e-17 91.7 108 53.7
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 6.9e-17 91.3 107 52.3
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 6.9e-17 91.3 100 52.0
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 6.9e-17 91.3 105 53.3
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 6.9e-17 91.3 105 53.3
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 6.9e-17 91.3 59 74.6
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 6.9e-17 91.3 103 53.4
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 6.9e-17 91.3 96 55.2
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 9.0e-17 90.9 111 50.5
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 9.0e-17 90.9 110 50.9
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 9.0e-17 90.9 104 51.9
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.2e-16 90.5 59 72.9
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-16 90.5 107 51.4
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-16 90.5 107 51.4
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.2e-16 90.5 108 51.9
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.2e-16 90.5 103 54.4
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.2e-16 90.5 103 54.4
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.2e-16 90.5 103 54.4
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.2e-16 90.5 99 54.5
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.5e-16 90.1 110 51.8
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-16 90.1 105 51.4
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.5e-16 90.1 108 51.9
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.5e-16 90.1 108 52.8
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 2.0e-16 89.7 104 52.9
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 2.0e-16 89.7 110 50.9
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 2.0e-16 89.7 109 49.5
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 2.0e-16 89.7 102 55.9
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 2.0e-16 89.7 113 50.4
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 3.4e-16 89.0 59 72.9
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 3.4e-16 89.0 59 72.9
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 3.4e-16 89.0 59 71.2
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 3.4e-16 89.0 67 67.2
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 3.4e-16 89.0 105 52.4
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 3.4e-16 89.0 105 52.4
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 3.4e-16 89.0 104 52.9
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 4.5e-16 88.6 106 51.9
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 4.5e-16 88.6 101 50.5
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 4.5e-16 88.6 59 69.5
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 4.5e-16 88.6 104 51.0
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.5e-16 88.6 103 53.4
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.5e-16 88.6 103 53.4
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 4.5e-16 88.6 104 51.0
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 5.9e-16 88.2 114 49.1
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 5.9e-16 88.2 105 52.4
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 5.9e-16 88.2 105 52.4
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 5.9e-16 88.2 117 47.9
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 7.6e-16 87.8 102 52.9
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.0e-15 87.4 109 50.5
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.0e-15 87.4 105 51.4
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.0e-15 87.4 109 50.5
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.0e-15 87.4 105 51.4
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.0e-15 87.4 109 50.5
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.3e-15 87.0 103 52.4
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.3e-15 87.0 60 66.7
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.3e-15 87.0 59 69.5
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.2e-15 86.3 107 49.5
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 2.2e-15 86.3 100 52.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 2.2e-15 86.3 104 50.0
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.2e-15 86.3 102 50.0
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 2.9e-15 85.9 107 51.4
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.8e-15 85.5 110 50.0
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 6.5e-15 84.7 59 67.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 6.5e-15 84.7 56 71.4
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 6.5e-15 84.7 98 55.1
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 6.5e-15 84.7 99 49.5
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 6.5e-15 84.7 106 47.2
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 8.5e-15 84.3 105 50.5
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.1e-14 84.0 152 43.4
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.9e-14 83.2 115 46.1
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.5e-14 82.8 101 52.5
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 2.5e-14 82.8 106 47.2
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 3.2e-14 82.4 192 43.8
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.2e-14 82.0 104 49.0
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 4.2e-14 82.0 79 58.2
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 7.2e-14 81.3 115 47.8
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 1.6e-13 80.1 102 44.1
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 1.6e-13 80.1 63 58.7
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.1e-13 79.7 114 47.4
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 2.7e-13 79.3 112 49.1
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.0e-12 77.4 50 76.0
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 2.3e-12 76.3 75 56.0
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 3.9e-12 75.5 75 56.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 5.1e-12 75.1 50 74.0
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 8.8e-12 74.3 87 50.6
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.9e-11 73.2 58 58.6
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.9e-11 73.2 134 39.6
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 3.3e-11 72.4 50 68.0
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 2.2e-10 69.7 44 77.3
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 3.7e-10 68.9 52 61.5
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 3.7e-10 68.9 49 67.3
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.8e-09 66.6 56 55.4
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 3.1e-09 65.9 44 72.7
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 2.6e-08 62.8 59 52.5
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-07 60.1 62 54.8
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-07 60.1 62 54.8
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-06 57.4 60 55.0
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-06 57.0 62 53.2
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-06 57.0 62 53.2
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-06 57.0 62 53.2


User provided reference genes

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