Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033336.1 Olea europaea HOM05D003321 ORTHO05D005161 4.2e-219 764.6 447 100.0
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 1.2e-93 347.8 490 56.5
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 8.2e-90 335.1 490 51.0
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 1.3e-87 327.8 490 54.1
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 2.2e-87 327.0 490 48.2
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 2.2e-87 327.0 492 47.6
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 9.4e-86 321.6 490 53.9
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 1.2e-85 321.2 488 49.2
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 6.1e-85 318.9 484 52.1
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 2.3e-84 317.0 488 49.0
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 3.0e-84 316.6 491 53.2
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 3.0e-84 316.6 490 53.3
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 3.9e-84 316.2 487 51.1
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 1.5e-83 314.3 489 52.8
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 1.5e-83 314.3 483 49.1
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 3.3e-83 313.2 487 47.2
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 7.4e-83 312.0 466 47.9
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 7.4e-83 312.0 490 48.4
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 7.4e-83 312.0 489 53.2
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 1.3e-82 311.2 490 52.7
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.7e-82 310.8 490 52.7
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 1.7e-82 310.8 485 53.2
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 2.2e-82 310.5 489 53.2
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 2.2e-82 310.5 489 53.2
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 2.2e-82 310.5 483 46.6
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 2.8e-82 310.1 490 50.2
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 2.8e-82 310.1 484 44.4
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 2.8e-82 310.1 486 53.1
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 3.7e-82 309.7 491 53.0
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 3.7e-82 309.7 489 53.0
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 4.8e-82 309.3 485 52.8
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 6.3e-82 308.9 466 54.5
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 1.1e-81 308.1 490 48.0
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 1.1e-81 308.1 494 49.4
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 1.4e-81 307.8 483 53.2
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 1.4e-81 307.8 486 52.7
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 2.4e-81 307.0 491 47.3
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 4.1e-81 306.2 497 51.1
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 5.3e-81 305.8 492 51.8
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 5.3e-81 305.8 487 51.7
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 7.0e-81 305.4 485 52.6
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 1.5e-80 304.3 491 51.7
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 1.5e-80 304.3 483 49.9
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.0e-80 303.9 486 51.4
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.0e-80 303.9 486 51.4
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 2.6e-80 303.5 494 46.2
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 3.5e-80 303.1 508 46.1
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 3.5e-80 303.1 492 53.3
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 4.5e-80 302.8 491 51.5
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 5.9e-80 302.4 490 51.8
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 7.7e-80 302.0 505 50.5
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 7.7e-80 302.0 490 51.6
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 7.7e-80 302.0 489 42.5
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 1.0e-79 301.6 482 51.9
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.0e-79 301.6 505 50.5
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 1.7e-79 300.8 489 48.5
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 2.2e-79 300.4 486 52.9
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 2.9e-79 300.1 509 49.5
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 2.9e-79 300.1 491 51.9
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 2.9e-79 300.1 478 53.3
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 2.9e-79 300.1 486 52.3
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 2.9e-79 300.1 486 52.3
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 3.8e-79 299.7 462 53.9
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 3.8e-79 299.7 505 50.3
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 3.8e-79 299.7 507 51.3
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 6.5e-79 298.9 486 52.1
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 1.1e-78 298.1 485 51.3
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 1.5e-78 297.7 486 52.1
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 1.9e-78 297.4 488 44.5
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 5.5e-78 295.8 490 43.5
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 9.4e-78 295.0 486 52.1
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 2.1e-77 293.9 488 49.2
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 2.1e-77 293.9 488 44.9
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 6.1e-77 292.4 500 51.0
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 6.1e-77 292.4 490 46.7
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 3.9e-76 289.7 487 43.9
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 5.2e-76 289.3 492 50.4
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 5.2e-76 289.3 498 50.6
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 8.8e-76 288.5 492 47.4
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 8.8e-76 288.5 487 50.3
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 1.5e-75 287.7 491 46.6
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 4.4e-75 286.2 366 49.2
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 7.4e-75 285.4 493 50.1
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 1.7e-74 284.3 488 50.8
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 1.7e-74 284.3 490 49.6
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 2.2e-74 283.9 503 49.1
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 2.2e-74 283.9 475 40.4
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 2.8e-74 283.5 487 42.9
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 3.7e-74 283.1 493 48.3
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 1.1e-73 281.6 490 47.1
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 1.4e-73 281.2 492 50.2
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 3.1e-73 280.0 494 49.4
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 3.1e-73 280.0 494 49.4
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 3.1e-73 280.0 494 49.4
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 3.1e-73 280.0 494 49.4
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 5.3e-73 279.3 493 49.3
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 9.1e-73 278.5 488 48.6
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 9.1e-73 278.5 494 49.2
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 1.6e-72 277.7 492 50.2
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 7.7e-72 275.4 491 47.9
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 1.0e-71 275.0 488 48.8
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 1.3e-71 274.6 491 49.1
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 1.7e-71 274.2 493 46.0
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 1.7e-71 274.2 490 47.8
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 3.8e-71 273.1 490 47.6
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 6.5e-71 272.3 491 49.1
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 8.5e-71 271.9 491 48.1
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 2.5e-70 270.4 494 49.2
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 2.5e-70 270.4 492 49.4
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 2.5e-70 270.4 487 42.7
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 3.2e-70 270.0 492 44.7
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 5.5e-70 269.2 507 46.4
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 7.2e-70 268.9 492 48.6
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 7.2e-70 268.9 494 49.0
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 1.2e-69 268.1 492 44.3
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 1.0e-68 265.0 489 48.3
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 2.3e-68 263.8 490 50.0
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 9.7e-67 258.5 367 46.6
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.3e-66 258.1 470 50.2
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 4.8e-66 256.1 492 47.8
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 6.3e-66 255.8 492 47.0
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 8.3e-66 255.4 489 40.5
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 1.1e-65 255.0 489 40.5
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 1.2e-64 251.5 493 42.6
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.2e-64 251.5 489 42.1
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.6e-64 251.1 489 45.0
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 4.5e-64 249.6 489 41.3
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 8.5e-63 245.4 393 41.2
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.1e-62 245.0 489 40.1
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 1.9e-62 244.2 469 37.7
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 1.9e-62 244.2 488 43.4
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 4.2e-62 243.0 236 58.1
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 1.2e-61 241.5 490 40.6
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 1.6e-61 241.1 225 57.3
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 1.4e-60 238.0 489 44.2
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 2.2e-58 230.7 484 41.3
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 1.1e-57 228.4 494 41.9
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.4e-57 226.1 235 54.9
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 5.4e-57 226.1 505 41.2
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 5.9e-56 222.6 514 42.4
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 7.2e-54 215.7 204 59.8
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 1.2e-51 208.4 498 39.6
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 5.7e-51 206.1 477 39.6
Cfa007905 Carpinus fangiana HOM05D003321 ORTHO05D005161 9.8e-51 205.3 140 75.0
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 3.9e-47 193.4 499 42.1
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 2.4e-41 174.1 288 42.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.3e-39 168.3 157 59.2
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 2.3e-39 167.5 458 34.1
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 6.2e-37 159.5 439 41.5
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 8.3e-34 149.1 373 41.6
CSS0041948 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 7.1e-33 146.0 112 68.8
CSS0018217 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 2.1e-32 144.4 112 67.9
PGSC0003DMG400001413 Solanum tuberosum HOM05D003321 ORTHO05D394828 3.6e-29 133.7 204 44.6
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 5.8e-27 126.3 231 33.8
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 1.7e-26 124.8 187 40.1
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 1.2e-24 118.6 245 32.7
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 1.2e-21 108.6 240 31.2
TAR371G0510 Trochodendron aralioides HOM05D003321 ORTHO05D414592 1.2e-21 108.6 233 34.8
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 4.9e-18 96.7 411 24.6
Oeu015789.1 Olea europaea HOM05D000528 ORTHO05D291572 4.9e-18 96.7 55 87.3
Oeu062026.1 Olea europaea HOM05D000528 ORTHO05D000999 6.4e-18 96.3 55 85.5
Cc07_g03050 Coffea canephora HOM05D003321 ORTHO05D005161 2.4e-17 94.4 173 61.3
BcaB01g02066 Brassica carinata HOM05D003321 ORTHO05D005161 1.6e-16 91.7 101 50.5
CDE05G3094 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 3.9e-15 87.0 159 40.3
Aqoxy3G00239 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 5.6e-14 83.2 135 40.0
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 2.8e-13 80.9 53 67.9
Aqoxy3G03302 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 5.8e-11 73.2 93 49.5
Lsat_1_v5_gn_5_101681 Lactuca sativa HOM05D003321 ORTHO05D000541 9.9e-11 72.4 107 42.1
HanXRQChr01g0022931 Helianthus annuus HOM05D003321 ORTHO05D019677 4.9e-10 70.1 55 60.0
HanXRQChr04g0102631 Helianthus annuus HOM05D003321 ORTHO05D019677 4.2e-09 67.0 55 58.2
HanXRQChr06g0173771 Helianthus annuus HOM05D003321 ORTHO05D019677 4.2e-09 67.0 55 58.2
Hma1.2p1_0105F.1_g050590 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 4.2e-09 67.0 53 66.0
HanXRQChr11g0334501 Helianthus annuus HOM05D003321 ORTHO05D019677 1.6e-08 65.1 53 58.5
HanXRQChr15g0486151 Helianthus annuus HOM05D003321 ORTHO05D019677 1.6e-08 65.1 53 58.5
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.7e-07 61.6 49 55.1
Lsat_1_v5_gn_6_49381 Lactuca sativa HOM05D003321 ORTHO05D033839 2.3e-07 61.2 36 75.0
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 3.9e-07 60.5 51 52.9
CANSAT01G0550 Cannabis sativa HOM05D000235 ORTHO05D000147 1.5e-06 58.5 47 55.3
Hma1.2p1_0423F.1_g150210 Hydrangea macrophylla HOM05D003321 ORTHO05D228203 1.5e-06 58.5 42 64.3
Cfa021690 Carpinus fangiana HOM05D003321 ORTHO05D005161 3.3e-06 57.4 196 22.4
ECA234G4637 Erigeron canadensis HOM05D003321 ORTHO05D008593 3.3e-06 57.4 119 32.8
BolC2t11554H Brassica oleracea HOM05D003321 ORTHO05D013943 4.3e-06 57.0 51 47.1
MD17G1205100 Malus domestica HOM05D003321 ORTHO05D013943 9.6e-06 55.8 55 47.3


User provided reference genes

Program Settings