Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 2.1e-310 1068.1 527 100.0
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 4.2e-210 734.9 525 69.7
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 3.9e-200 701.8 531 64.0
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.1e-199 700.3 530 69.1
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.0e-195 687.2 525 63.4
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.1e-189 667.2 530 63.0
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 3.1e-189 665.6 535 61.9
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 4.5e-188 661.8 528 60.2
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 3.0e-184 649.0 529 59.9
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.0e-183 646.4 527 61.7
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 7.4e-183 644.4 536 61.6
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.3e-181 638.3 537 59.2
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 9.1e-181 637.5 528 60.6
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.9e-179 632.5 537 57.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.5e-178 629.4 528 59.5
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 3.2e-178 629.0 528 59.1
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.4e-173 612.8 533 58.9
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.1e-173 612.5 535 58.9
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 9.1e-173 610.9 529 56.3
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.5e-170 602.8 535 57.2
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.5e-167 593.6 522 55.7
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 4.8e-166 588.6 534 55.2
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 8.3e-166 587.8 538 55.9
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 3.5e-164 582.4 533 55.5
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 3.5e-164 582.4 527 56.2
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 5.9e-164 581.6 540 54.6
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.5e-162 577.0 525 54.1
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 8.0e-161 571.2 531 55.0
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 6.8e-160 568.2 524 53.2
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.5e-159 564.7 539 54.0
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.7e-158 563.5 528 54.0
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.8e-157 560.1 524 52.7
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 4.1e-157 558.9 536 52.6
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.5e-156 555.4 537 53.1
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 6.6e-155 551.6 534 53.0
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.1e-154 550.8 530 53.8
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 1.5e-154 550.4 539 53.4
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.9e-154 550.1 540 51.9
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 2.3e-152 543.1 528 51.1
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.1e-149 534.3 525 51.6
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.4e-149 533.9 532 51.7
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 2.4e-149 533.1 533 51.8
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 4.1e-149 532.3 532 51.9
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 5.4e-149 531.9 538 52.0
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 3.0e-147 526.2 532 51.3
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 8.6e-147 524.6 531 51.6
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.5e-146 523.1 528 51.1
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 3.3e-146 522.7 544 50.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.2e-145 520.8 538 50.7
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.1e-145 520.0 528 51.1
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.8e-145 519.6 527 50.7
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.2e-145 518.5 527 50.5
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.4e-144 517.3 543 49.0
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 1.8e-144 516.9 525 50.9
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.8e-144 516.9 525 50.9
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.3e-144 516.5 529 51.2
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 2.3e-144 516.5 530 51.5
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.2e-143 514.2 543 48.4
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 9.8e-143 511.1 540 49.6
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.4e-141 507.3 535 50.5
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.9e-141 506.9 534 50.9
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 2.4e-141 506.5 532 50.0
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.4e-141 505.4 532 50.0
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.1e-141 505.0 534 48.1
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 4.6e-140 502.3 550 48.5
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.5e-138 497.3 540 48.7
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 4.3e-138 495.7 530 49.6
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.6e-137 493.8 522 49.4
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 6.2e-137 491.9 534 49.6
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 7.6e-135 485.0 519 48.4
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 7.1e-133 478.4 527 48.8
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.6e-132 477.2 549 47.2
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 2.7e-132 476.5 527 47.4
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.3e-131 474.2 536 46.3
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.7e-131 473.8 581 45.8
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 7.3e-130 468.4 524 46.9
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.8e-129 466.5 545 46.4
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.1e-128 464.5 528 46.2
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.4e-128 464.2 524 46.0
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.4e-128 463.4 546 46.7
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 5.2e-128 462.2 528 47.2
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 6.8e-128 461.8 524 46.0
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 1.5e-127 460.7 450 53.1
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.6e-127 459.9 514 48.2
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 4.4e-127 459.1 535 46.9
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.2e-126 456.8 536 45.5
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.3e-123 447.6 533 44.7
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.5e-122 444.1 532 45.5
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 6.2e-121 438.7 466 50.2
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 4.9e-118 429.1 449 51.2
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 7.9e-116 421.8 531 44.6
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 3.9e-115 419.5 531 43.3
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 2.1e-113 413.7 540 44.6
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.4e-112 411.0 524 43.1
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.4e-112 411.0 524 43.1
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.4e-112 411.0 524 43.1
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 2.4e-112 410.2 525 43.8
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 1.5e-111 407.5 525 42.3
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 5.4e-109 399.1 503 45.5
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.7e-108 396.7 523 41.9
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 4.3e-106 389.4 416 49.8
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 9.6e-106 388.3 547 40.4
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 4.9e-102 375.9 476 46.0
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 7.9e-100 368.6 327 56.9
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 4.8e-89 332.8 539 38.2
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.5e-87 326.2 584 36.8
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 1.5e-82 311.2 280 53.9
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.3e-82 310.1 614 33.4
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 7.4e-82 308.9 294 51.0
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 6.9e-80 302.4 228 62.7
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.7e-75 285.8 296 51.0
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 5.0e-70 269.6 316 47.2
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 6.5e-70 269.2 325 44.9
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 4.5e-63 246.5 406 38.2
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.7e-57 228.0 558 31.5
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 9.1e-56 222.2 551 29.4
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 8.6e-46 189.1 318 34.3
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 3.3e-45 187.2 196 43.4
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 4.4e-42 176.8 559 26.7
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 4.4e-42 176.8 290 38.6
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.7e-38 164.9 381 30.7
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 2.3e-38 164.5 322 31.1
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 6.0e-31 139.8 182 40.7
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 3.6e-28 130.6 122 54.9
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.1e-27 127.5 124 49.2
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.0e-22 112.5 104 48.1
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.9e-22 110.5 133 43.6
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-21 108.2 293 28.7
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 7.3e-21 106.3 107 47.7
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 4.0e-19 100.5 95 44.2
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 8.9e-19 99.4 210 33.3
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.3e-17 95.5 202 33.2
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.0e-14 85.9 89 42.7
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.8e-12 77.8 186 32.3
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.6e-12 77.4 186 32.3
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 6.2e-12 76.6 62 50.0
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.1e-11 75.9 69 58.0
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 4.0e-11 73.9 153 34.0
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.6e-10 69.7 60 50.0
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 9.9e-10 69.3 184 23.9
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-09 67.8 90 33.3
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-08 65.9 156 33.3
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.4e-08 63.5 108 35.2
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.6e-07 60.5 56 50.0
Nitab4.5_0001189g0060 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.6e-07 60.5 43 58.1
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.3e-06 58.2 63 47.6


User provided reference genes

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