Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu029503.1 Olea europaea HOM05D002722 ORTHO05D003076 1.3e-52 209.9 145 100.0
Oeu059335.1 Olea europaea HOM05D002722 ORTHO05D003076 4.2e-19 98.6 117 78.6
MSTRG.23859 Avicennia marina HOM05D002722 ORTHO05D003076 7.1e-19 97.8 118 50.0
Sc19g0008230 Simmondsia chinensis HOM05D002722 ORTHO05D003076 5.1e-17 91.7 126 41.3
Dinv09476 Davidia involucrata HOM05D002722 ORTHO05D003076 1.1e-16 90.5 69 62.3
Dinv34371 Davidia involucrata HOM05D002722 ORTHO05D003076 1.9e-16 89.7 117 44.4
Lj1A1095T29 Lonicera japonica HOM05D002722 ORTHO05D003076 1.9e-16 89.7 117 44.4
SalBow5G1745 Salvia bowleyana HOM05D002722 ORTHO05D003076 4.3e-16 88.6 117 45.3
GSVIVG01027320001 Vitis vinifera HOM05D002722 ORTHO05D003076 7.4e-16 87.8 117 42.7
Nitab4.5_0007985g0020 Nicotiana tabacum HOM05D002722 ORTHO05D003076 9.7e-16 87.4 117 43.6
unitig_37.g12701 Utricularia gibba HOM05D002722 ORTHO05D003076 9.7e-16 87.4 118 46.6
Nitab4.5_0000125g0340 Nicotiana tabacum HOM05D002722 ORTHO05D003076 1.3e-15 87.0 117 42.7
Sopen12g008390 Solanum pennellii HOM05D002722 ORTHO05D003076 1.6e-15 86.7 117 43.6
CAN.G506.9 Capsicum annuum HOM05D002722 ORTHO05D003076 2.2e-15 86.3 117 43.6
Solyc12g017630.2 Solanum lycopersicum HOM05D002722 ORTHO05D003076 2.2e-15 86.3 117 42.7
PGSC0003DMG400033615 Solanum tuberosum HOM05D002722 ORTHO05D003076 3.7e-15 85.5 117 42.7
SGA_v2.0_scaffold273G46400 Striga asiatica HOM05D002722 ORTHO05D003076 3.7e-15 85.5 122 45.9
SalBow8G4805 Salvia bowleyana HOM05D002722 ORTHO05D003076 2.4e-14 82.8 118 44.9
GSVIVG01033616001 Vitis vinifera HOM05D002722 ORTHO05D003076 2.4e-14 82.8 117 40.2
MBI10_g18308_MAGBIO Magnolia biondii HOM05D002722 ORTHO05D003076 4.1e-14 82.0 74 52.7
Migut.D02225 Erythranthe guttata HOM05D002722 ORTHO05D003076 6.9e-14 81.3 120 42.5
CiPaw.09G046900 Carya illinoinensis HOM05D002722 ORTHO05D003076 9.0e-14 80.9 130 39.2
DCAR_013140 Daucus carota HOM05D002722 ORTHO05D003076 1.2e-13 80.5 120 55.8
DCAR_015349 Daucus carota HOM05D002722 ORTHO05D003076 1.2e-13 80.5 119 42.9
Cpa.g.sc5.184 Carica papaya HOM05D002722 ORTHO05D003076 2.0e-13 79.7 69 55.1
Peaxi162Scf00105g01445 Petunia axillaris HOM05D002722 ORTHO05D003076 2.0e-13 79.7 119 42.9
SGA_v2.0_scaffold94G28531 Striga asiatica HOM05D002722 ORTHO05D003076 2.0e-13 79.7 121 41.3
Nitab4.5_0006579g0030 Nicotiana tabacum HOM05D002722 ORTHO05D003076 3.4e-13 79.0 117 41.0
CDE06G1766 Ceratophyllum demersum HOM05D002722 ORTHO05D003076 5.9e-13 78.2 126 39.7
CSS0045331 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 7.7e-13 77.8 68 54.4
QL07p009818 Quercus lobata HOM05D002722 ORTHO05D003076 7.7e-13 77.8 79 49.4
AUR62003734 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.0e-12 77.4 77 45.5
Actinidia38157 Actinidia chinensis HOM05D002722 ORTHO05D003076 1.3e-12 77.0 117 38.5
CDE04G2576 Ceratophyllum demersum HOM05D002722 ORTHO05D003076 1.3e-12 77.0 126 38.1
AUR62022315 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.7e-12 76.6 77 45.5
AUR62022312 Chenopodium quinoa HOM05D002722 ORTHO05D003076 2.2e-12 76.3 68 48.5
QL08p033654 Quercus lobata HOM05D002722 ORTHO05D003076 2.2e-12 76.3 78 48.7
Cc06_g19070 Coffea canephora HOM05D002722 ORTHO05D003076 2.9e-12 75.9 70 52.9
Duzib128G1110 Durio zibethinus HOM05D002722 ORTHO05D003076 2.9e-12 75.9 83 49.4
AUR62014167 Chenopodium quinoa HOM05D002722 ORTHO05D003076 3.8e-12 75.5 68 48.5
HanXRQChr13g0414121 Helianthus annuus HOM05D002722 ORTHO05D003076 3.8e-12 75.5 123 50.4
Rhsim04G0110900 Rhododendron simsii HOM05D002722 ORTHO05D003076 3.8e-12 75.5 117 39.3
Thecc.07G138100 Theobroma cacao HOM05D002722 ORTHO05D003076 3.8e-12 75.5 119 39.5
EL10As8g23871 Beta vulgaris HOM05D002722 ORTHO05D003076 5.0e-12 75.1 77 45.5
AUR62026605 Chenopodium quinoa HOM05D002722 ORTHO05D003076 5.0e-12 75.1 68 48.5
Aqoxy3G03846 Aquilegia oxysepala HOM05D002722 ORTHO05D003076 6.5e-12 74.7 72 50.0
Gohir.A12G115000 Gossypium hirsutum HOM05D002722 ORTHO05D003076 6.5e-12 74.7 124 51.6
Hma1.2p1_2276F.1_g318640 Hydrangea macrophylla HOM05D002722 ORTHO05D003076 6.5e-12 74.7 122 55.7
Thecc.05G137600 Theobroma cacao HOM05D002722 ORTHO05D003076 6.5e-12 74.7 69 53.6
AUR62023903 Chenopodium quinoa HOM05D002722 ORTHO05D003076 8.5e-12 74.3 77 45.5
HanXRQChr03g0084251 Helianthus annuus HOM05D002722 ORTHO05D003076 8.5e-12 74.3 125 41.6
PGR142G2871 Punica granatum HOM05D002722 ORTHO05D003076 8.5e-12 74.3 77 50.6
Hma1.2p1_0004F.1_g003775 Hydrangea macrophylla HOM05D002722 ORTHO05D003076 1.4e-11 73.6 125 46.4
Aa31LG10G11900 Aethionema arabicum HOM05D002722 ORTHO05D003076 1.9e-11 73.2 70 51.4
Ciclev10005540m.g Citrus clementina HOM05D002722 ORTHO05D003076 1.9e-11 73.2 77 46.8
CsaV3_3G040270 Cucumis sativus L. HOM05D002722 ORTHO05D003076 2.5e-11 72.8 119 38.7
Gohir.D12G108700 Gossypium hirsutum HOM05D002722 ORTHO05D003076 2.5e-11 72.8 69 50.7
Gorai.008G117700 Gossypium raimondii HOM05D002722 ORTHO05D003076 2.5e-11 72.8 69 50.7
QL05p018587 Quercus lobata HOM05D002722 ORTHO05D003076 2.5e-11 72.8 69 52.2
QL93p1866_0204 Quercus lobata HOM05D002722 ORTHO05D003076 2.5e-11 72.8 69 52.2
Hund19102 Selenicereus undatus HOM05D002722 ORTHO05D003076 2.5e-11 72.8 117 33.3
THA.LOC104803263 Tarenaya hassleriana HOM05D002722 ORTHO05D003076 2.5e-11 72.8 60 56.7
AUR62022313 Chenopodium quinoa HOM05D002722 ORTHO05D003076 3.2e-11 72.4 77 44.2
Gohir.D12G118500 Gossypium hirsutum HOM05D002722 ORTHO05D003076 3.2e-11 72.4 124 48.4
Lsat_1_v5_gn_6_79381 Lactuca sativa HOM05D002722 ORTHO05D003076 3.2e-11 72.4 126 38.9
PSO478G3377 Papaver somniferum HOM05D002722 ORTHO05D003076 4.2e-11 72.0 120 43.3
Gorai.008G128200 Gossypium raimondii HOM05D002722 ORTHO05D003076 5.5e-11 71.6 123 49.6
Aa31LG10G12290 Aethionema arabicum HOM05D002722 ORTHO05D003076 9.4e-11 70.9 69 50.7
Peaxi162Scf00013g01020 Petunia axillaris HOM05D002722 ORTHO05D003076 9.4e-11 70.9 71 52.1
MELO3C009764.2 Cucumis melo HOM05D002722 ORTHO05D003076 1.2e-10 70.5 119 37.8
vmacro09026 Vaccinium macrocarpon HOM05D002722 ORTHO05D003076 1.2e-10 70.5 117 36.8
COL.COLO4_35076 Corchorus olitorius HOM05D002722 ORTHO05D003076 1.6e-10 70.1 89 44.9
MD14G1085000 Malus domestica HOM05D002722 ORTHO05D003076 1.6e-10 70.1 119 52.1
Potri.006G040600 Populus trichocarpa HOM05D002722 ORTHO05D003076 1.6e-10 70.1 69 52.2
Sabra16G0039500 Salix brachista HOM05D002722 ORTHO05D003076 1.6e-10 70.1 69 47.8
arahy.Tifrunner.gnm1.ann1.S7ZPK3 Arachis hypogaea HOM05D002722 ORTHO05D003076 2.1e-10 69.7 60 55.0
arahy.Tifrunner.gnm1.ann1.ZN92QR Arachis hypogaea HOM05D002722 ORTHO05D003076 2.1e-10 69.7 60 55.0
PSO017G6910 Papaver somniferum HOM05D002722 ORTHO05D003076 2.1e-10 69.7 60 55.0
Sopen12g008460 Solanum pennellii HOM05D002722 ORTHO05D003076 2.1e-10 69.7 66 54.5
ClCG10G016150 Citrullus lanatus HOM05D002722 ORTHO05D003076 2.7e-10 69.3 119 36.1
Duzib093G1218 Durio zibethinus HOM05D002722 ORTHO05D003076 2.7e-10 69.3 117 62.4
Lj6g0004170 Lotus japonicus HOM05D002722 ORTHO05D003076 2.7e-10 69.3 60 56.7
Phvul.011G027300 Phaseolus vulgaris HOM05D002722 ORTHO05D003076 2.7e-10 69.3 60 56.7
THA.LOC104824404 Tarenaya hassleriana HOM05D002722 ORTHO05D003076 2.7e-10 69.3 69 50.7
Sabra16G0022400 Salix brachista HOM05D002722 ORTHO05D003076 3.6e-10 68.9 69 50.7
Sabra16G0029700 Salix brachista HOM05D002722 ORTHO05D003076 3.6e-10 68.9 69 50.7
Sp5g05580 Schrenkiella parvula HOM05D002722 ORTHO05D003076 3.6e-10 68.9 70 52.9
Sed0027858 Sechium edule HOM05D002722 ORTHO05D003076 4.6e-10 68.6 119 37.8
VMungo1127G1646 Vigna mungo HOM05D002722 ORTHO05D003076 4.6e-10 68.6 69 50.7
CSS0033813 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 6.1e-10 68.2 93 43.0
CANSAT64G0594 Cannabis sativa HOM05D002722 ORTHO05D003076 6.1e-10 68.2 60 55.0
Manes.08G059000 Manihot esculenta HOM05D002722 ORTHO05D003076 6.1e-10 68.2 58 58.6
Glyma.12G025100 Glycine max HOM05D002722 ORTHO05D003076 7.9e-10 67.8 60 55.0
Nn3g17659 Nelumbo nucifera HOM05D002722 ORTHO05D003076 7.9e-10 67.8 57 50.9
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 7.9e-10 67.8 71 47.9
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 7.9e-10 67.8 71 47.9
CSS0008082 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 1.0e-09 67.4 68 50.0
Ca_04642_v3 Cicer arietinum L. HOM05D002722 ORTHO05D003076 1.0e-09 67.4 63 54.0
Prupe.7G040700 Prunus persica HOM05D002722 ORTHO05D003076 1.0e-09 67.4 58 58.6
TWI77G0285 Tripterygium wilfordii HOM05D002722 ORTHO05D003076 1.0e-09 67.4 61 54.1
C08p32330 Brassica napus HOM05D002722 ORTHO05D003076 1.4e-09 67.0 66 56.1
BolC8t50847H Brassica oleracea HOM05D002722 ORTHO05D003076 1.4e-09 67.0 66 56.1
TWI53G0099 Tripterygium wilfordii HOM05D002722 ORTHO05D003076 1.4e-09 67.0 64 53.1
AT3G57000 Arabidopsis thaliana HOM05D002722 ORTHO05D003076 1.8e-09 66.6 64 50.0
Lalb_Chr02g0156551 Lupinus albus HOM05D002722 ORTHO05D003076 1.8e-09 66.6 61 57.4
Atru.chr6.2789 Acer truncatum HOM05D002722 ORTHO05D003076 2.3e-09 66.2 68 50.0
Lalb_Chr02g0156541 Lupinus albus HOM05D002722 ORTHO05D003076 2.3e-09 66.2 60 55.0
Medtr3g096190 Medicago truncatula HOM05D002722 ORTHO05D003076 2.3e-09 66.2 70 48.6
Lj1g0008464 Lotus japonicus HOM05D002722 ORTHO05D003076 3.0e-09 65.9 55 58.2
Medtr4g032390 Medicago truncatula HOM05D002722 ORTHO05D003076 3.0e-09 65.9 60 55.0
Potri.016G037500 Populus trichocarpa HOM05D002722 ORTHO05D003076 3.0e-09 65.9 118 50.8
AL5G38450 Arabidopsis lyrata HOM05D002722 ORTHO05D003076 5.1e-09 65.1 64 48.4
Ca_12664_v3 Cicer arietinum L. HOM05D002722 ORTHO05D003076 5.1e-09 65.1 63 50.8
CARHR167150 Cardamine hirsuta HOM05D002722 ORTHO05D003076 6.7e-09 64.7 55 58.2
Glyma.11G099000 Glycine max HOM05D002722 ORTHO05D003076 6.7e-09 64.7 60 53.3
HPP92_003789 Vanilla planifolia HOM05D002722 ORTHO05D003076 6.7e-09 64.7 78 41.0
Psat7g226520 Pisum sativum HOM05D002722 ORTHO05D003076 8.8e-09 64.3 62 50.0
BcaC07g40020 Brassica carinata HOM05D002722 ORTHO05D003076 1.1e-08 63.9 66 54.5
CSS0007850 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 1.1e-08 63.9 68 50.0
CSS0013149 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 1.1e-08 63.9 68 48.5
ECA246G4177 Erigeron canadensis HOM05D002722 ORTHO05D003076 1.1e-08 63.9 40 72.5
Sed0020900 Sechium edule HOM05D002722 ORTHO05D003076 1.1e-08 63.9 119 34.5
ATR1098G114 Amborella trichopoda HOM05D002722 ORTHO05D003076 1.5e-08 63.5 54 57.4
BcaC07g40087 Brassica carinata HOM05D002722 ORTHO05D003076 1.5e-08 63.5 55 58.2
A09p49930 Brassica napus HOM05D002722 ORTHO05D003076 1.5e-08 63.5 65 53.8
Os02g0290400 Oryza sativa ssp. japonica HOM05D002722 ORTHO05D003076 1.5e-08 63.5 64 50.0
Eucgr.A00197 Eucalyptus grandis HOM05D002722 ORTHO05D003076 2.0e-08 63.2 78 41.0
Eucgr.A02611 Eucalyptus grandis HOM05D002722 ORTHO05D003076 2.0e-08 63.2 78 43.6
Lj1A1097T43 Lonicera japonica HOM05D002722 ORTHO05D003076 2.0e-08 63.2 40 70.0
Aqoxy6G02147 Aquilegia oxysepala HOM05D002722 ORTHO05D003076 2.5e-08 62.8 68 42.6
BraA09t40444Z Brassica rapa HOM05D002722 ORTHO05D003076 2.5e-08 62.8 65 53.8
Sc13g0001210 Simmondsia chinensis HOM05D002722 ORTHO05D003076 2.5e-08 62.8 112 38.4
Carub.0005s2374 Capsella rubella HOM05D002722 ORTHO05D003076 4.3e-08 62.0 64 45.3
TAR622G0121 Trochodendron aralioides HOM05D002722 ORTHO05D003076 7.4e-08 61.2 53 52.8
BcaB02g07626 Brassica carinata HOM05D002722 ORTHO05D003076 1.3e-07 60.5 66 45.5
RcHm_v2.0_Chr1g0324931 Rosa chinensis HOM05D002722 ORTHO05D003076 1.3e-07 60.5 120 57.5
FvH4_7g03130 Fragaria vesca HOM05D002722 ORTHO05D003076 1.7e-07 60.1 130 35.4
TPR.G8394 Trifolium pratense HOM05D002722 ORTHO05D003076 1.7e-07 60.1 61 52.5
FAN06G2456 Fragaria x ananassa HOM05D002722 ORTHO05D003076 2.2e-07 59.7 130 35.4
Solyc12g017675.2 Solanum lycopersicum HOM05D002722 ORTHO05D003076 2.2e-07 59.7 74 41.9
Actinidia17690 Actinidia chinensis HOM05D002722 ORTHO05D003076 2.8e-07 59.3 40 62.5
FAN03G1329 Fragaria x ananassa HOM05D002722 ORTHO05D003076 2.8e-07 59.3 121 36.4
FAN10G3784 Fragaria x ananassa HOM05D002722 ORTHO05D003076 2.8e-07 59.3 121 36.4
Pp3c24_11670 Physcomitrium patens HOM05D002722 ORTHO05D003076 3.7e-07 58.9 68 47.1
SalBow8G2070 Salvia bowleyana HOM05D002722 ORTHO05D003076 4.8e-07 58.5 120 35.0
Mapoly0014s0080 Marchantia polymorpha HOM05D002722 ORTHO05D003076 6.3e-07 58.2 49 57.1
SMO347G0033 Selaginella moellendorffii HOM05D002722 ORTHO05D003076 8.2e-07 57.8 42 66.7
Gorai.008G095800 Gossypium raimondii HOM05D002722 ORTHO05D003076 1.8e-06 56.6 79 43.0
TPR.G22980 Trifolium pratense HOM05D002722 ORTHO05D003076 1.8e-06 56.6 60 48.3
Gohir.A12G087250 Gossypium hirsutum HOM05D002722 ORTHO05D003076 4.1e-06 55.5 68 41.2
Rhsim09G0083600 Rhododendron simsii HOM05D002722 ORTHO05D003076 4.1e-06 55.5 69 40.6
Sed0027850 Sechium edule HOM05D002722 ORTHO05D003076 4.1e-06 55.5 64 43.8
BcaC04g18585 Brassica carinata HOM05D000493 ORTHO05D003076 5.3e-06 55.1 40 62.5
AagrBONN_evm.TU.Sc2ySwM_368.2134 Anthoceros agrestis HOM05D002722 ORTHO05D003076 6.9e-06 54.7 49 51.0
Nitab4.5_0005720g0010 Nicotiana tabacum HOM05D002722 ORTHO05D003076 6.9e-06 54.7 35 65.7
Hund00512 Selenicereus undatus HOM05D002722 ORTHO05D003076 6.9e-06 54.7 54 48.1
Nitab4.5_0005444g0010 Nicotiana tabacum HOM05D002722 ORTHO05D003076 9.1e-06 54.3 37 59.5


User provided reference genes

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