Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.5e-83 312.8 155 100.0
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 85.2
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.1e-70 270.0 155 82.6
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 3.3e-70 268.5 155 81.9
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 83.2
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 3.6e-69 265.0 155 82.6
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.1e-68 263.5 155 81.9
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.1e-68 263.5 155 81.9
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.8e-68 262.7 155 79.4
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.8e-68 262.7 155 79.4
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 79.4
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 80.0
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.6e-67 258.8 155 79.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 2.6e-67 258.8 155 79.4
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 3.4e-67 258.5 155 80.0
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 77.4
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 80.0
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 4.4e-67 258.1 154 79.2
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 5.8e-67 257.7 155 78.7
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.3e-66 256.5 155 78.1
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.2e-66 255.8 155 78.7
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 2.2e-66 255.8 155 79.4
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.2e-66 255.8 155 77.4
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 2.9e-66 255.4 155 78.7
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 3.7e-66 255.0 155 78.1
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.4e-66 254.2 155 78.1
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 8.3e-66 253.8 155 79.4
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 8.3e-66 253.8 155 76.1
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 8.3e-66 253.8 155 76.8
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 8.3e-66 253.8 155 80.0
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 1.1e-65 253.4 155 76.8
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.1e-65 253.4 155 75.5
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.9e-65 252.7 155 79.4
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 2.4e-65 252.3 155 76.1
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.4e-65 252.3 155 78.1
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 4.1e-65 251.5 174 71.8
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 74.8
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 74.2
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 78.7
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 77.4
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 2.1e-64 249.2 155 75.5
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 2.1e-64 249.2 155 75.5
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.5e-64 248.4 155 74.8
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 74.8
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 74.8
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 74.2
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 73.5
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 1.3e-63 246.5 155 78.1
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 76.1
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 75.5
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 8.6e-63 243.8 155 74.8
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.6e-63 243.8 155 75.5
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 72.9
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.5e-62 242.3 155 72.9
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 72.3
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 9.5e-62 240.4 156 75.6
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 9.5e-62 240.4 156 75.6
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.6e-61 239.6 155 74.2
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 1.6e-61 239.6 145 78.6
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.8e-61 238.8 145 78.6
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.6e-61 238.4 133 86.5
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 74.8
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 6.2e-61 237.7 155 72.3
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 1.8e-60 236.1 153 73.2
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 72.9
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 72.9
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 5.2e-60 234.6 155 71.6
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 74.2
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 72.3
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 69.0
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 73.5
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 73.5
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 71.6
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 72.3
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 72.3
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 72.9
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 71.6
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 71.6
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.3e-58 229.9 127 86.6
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.7e-58 229.6 155 70.3
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 2.2e-58 229.2 152 70.4
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 2.2e-58 229.2 152 72.4
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 2.9e-58 228.8 152 72.4
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.9e-58 228.0 155 71.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 72.9
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 71.0
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 70.3
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-57 226.9 155 71.0
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 3.2e-57 225.3 151 72.2
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 2.1e-56 222.6 147 73.5
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.0e-56 221.1 150 73.3
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 7.8e-56 220.7 155 69.7
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 3.0e-55 218.8 147 69.4
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 3.9e-55 218.4 133 78.2
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.9e-54 216.1 150 71.3
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 2.5e-54 215.7 154 68.2
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 2.5e-54 215.7 214 54.2
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 4.3e-54 214.9 156 69.2
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 5.6e-54 214.5 156 69.2
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 2.1e-53 212.6 156 69.2
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 4.7e-53 211.5 147 70.7
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 6.2e-53 211.1 152 67.8
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 8.1e-53 210.7 156 67.9
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 3.1e-52 208.8 146 70.5
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.4e-51 205.3 157 65.6
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 3.4e-51 205.3 153 63.4
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.2e-50 202.6 155 61.9
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 3.2e-49 198.7 156 65.4
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 5.4e-49 198.0 155 65.2
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.2e-48 196.8 188 53.7
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.7e-48 195.7 163 62.6
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.7e-47 193.0 149 64.4
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 6.6e-47 191.0 165 58.2
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 8.7e-47 190.7 126 71.4
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 8.7e-47 190.7 126 71.4
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.1e-46 190.3 126 70.6
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 4.3e-46 188.3 152 61.2
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.4e-44 183.3 128 66.4
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 5.3e-44 181.4 153 58.8
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 4.9e-42 174.9 146 59.6
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 8.4e-42 174.1 153 54.9
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 8.4e-42 174.1 114 72.8
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.7e-39 166.4 99 79.8
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.5e-38 163.3 103 71.8
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 3.6e-37 158.7 109 75.2
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 5.8e-35 151.4 109 62.4
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.8e-35 151.4 104 69.2
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 5.8e-35 151.4 91 78.0
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 7.6e-35 151.0 109 63.3
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 2.2e-34 149.4 144 49.3
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 7.9e-32 141.0 144 52.1
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 2.5e-30 136.0 83 77.1
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 2.4e-28 129.4 148 43.9
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 4.0e-28 128.6 128 53.1
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.2e-27 127.1 152 48.7
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 5.3e-20 101.7 153 35.9
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 4.5e-19 98.6 130 40.0
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.2e-17 92.4 61 70.5
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.2e-17 92.4 61 70.5
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.1e-17 91.3 68 66.2
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 9.3e-17 90.9 68 66.2
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.0e-15 87.4 50 78.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.8e-15 86.7 129 37.2


User provided reference genes

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