Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu027415.2 Olea europaea HOM05D003438 ORTHO05D004235 0.0e+00 1645.9 830 100.0
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 0.0e+00 1103.6 855 65.5
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 6.2e-309 1063.9 849 64.7
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 8.7e-303 1043.5 814 66.2
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 4.0e-300 1034.6 852 62.9
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 1.0e-295 1020.0 778 66.7
Cc11_g11330 Coffea canephora HOM05D003438 ORTHO05D004235 1.9e-289 999.2 861 59.6
MD16G1052600 Malus domestica HOM05D003438 ORTHO05D004235 1.1e-286 989.9 866 58.4
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 1.1e-286 989.9 888 59.0
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 1.4e-284 983.0 873 57.6
vmacro10455 Vaccinium macrocarpon HOM05D003438 ORTHO05D004235 1.4e-284 983.0 863 58.2
Prupe.1G298000 Prunus persica HOM05D003438 ORTHO05D004235 1.2e-283 979.9 866 58.3
GSVIVG01010139001 Vitis vinifera HOM05D003438 ORTHO05D004235 9.3e-281 970.3 903 56.8
Cfa008813 Carpinus fangiana HOM05D003438 ORTHO05D004235 1.1e-278 963.4 864 57.5
Sabra10G0104100 Salix brachista HOM05D003438 ORTHO05D004235 3.3e-278 961.8 864 56.9
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 9.7e-278 960.3 837 58.3
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 2.8e-277 958.7 866 57.0
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 3.1e-276 955.3 867 57.0
CAN.G263.2 Capsicum annuum HOM05D003438 ORTHO05D004235 1.2e-275 953.4 852 58.9
Nitab4.5_0000149g0230 Nicotiana tabacum HOM05D003438 ORTHO05D004235 3.4e-275 951.8 853 58.6
HanXRQChr16g0528311 Helianthus annuus HOM05D003438 ORTHO05D004235 5.0e-274 948.0 858 57.1
Sopen04g001190 Solanum pennellii HOM05D003438 ORTHO05D004235 6.5e-274 947.6 853 58.0
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 1.1e-273 946.8 860 57.6
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 4.6e-272 941.4 780 61.4
Hma1.2p1_0762F.1_g214450 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 4.6e-272 941.4 780 61.4
ECA234G3211 Erigeron canadensis HOM05D003438 ORTHO05D004235 2.3e-271 939.1 852 57.5
Haze_11830 Corylus avellana HOM05D003438 ORTHO05D004235 5.7e-270 934.5 867 55.6
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 4.8e-269 931.4 864 55.2
Nn4g23588 Nelumbo nucifera HOM05D003438 ORTHO05D004235 2.4e-268 929.1 865 55.0
Nitab4.5_0000591g0100 Nicotiana tabacum HOM05D003438 ORTHO05D004235 3.8e-266 921.8 879 55.6
Manes.14G092500 Manihot esculenta HOM05D003438 ORTHO05D004235 5.0e-266 921.4 840 56.3
arahy.Tifrunner.gnm1.ann1.2XHE7W Arachis hypogaea HOM05D003438 ORTHO05D004235 4.2e-265 918.3 858 55.0
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 2.7e-264 915.6 860 54.7
Lsat_1_v5_gn_4_21341 Lactuca sativa HOM05D003438 ORTHO05D004235 7.9e-264 914.1 852 56.3
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 6.7e-263 911.0 870 53.7
arahy.Tifrunner.gnm1.ann1.KJ79M0 Arachis hypogaea HOM05D003438 ORTHO05D004235 3.3e-262 908.7 850 54.8
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 5.7e-262 907.9 862 54.2
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 1.7e-261 906.4 863 54.8
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 2.8e-261 905.6 870 53.3
Gohir.A03G107400 Gossypium hirsutum HOM05D003438 ORTHO05D004235 3.7e-261 905.2 867 53.9
FvH4_4g28800 Fragaria vesca HOM05D003438 ORTHO05D004235 4.8e-261 904.8 864 55.9
FAN17G0827 Fragaria x ananassa HOM05D003438 ORTHO05D004235 1.2e-259 900.2 885 54.9
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 1.2e-259 900.2 860 53.7
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 2.6e-259 899.0 885 54.6
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 1.7e-258 896.3 869 53.4
Sc04g0007220 Simmondsia chinensis HOM05D003438 ORTHO05D004235 2.2e-258 896.0 862 52.8
Atru.chr11.1518 Acer truncatum HOM05D003438 ORTHO05D004235 5.0e-258 894.8 867 54.9
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 1.4e-257 893.3 868 53.7
Lj4g0011234 Lotus japonicus HOM05D003438 ORTHO05D004235 2.5e-257 892.5 861 52.8
FAN12G2600 Fragaria x ananassa HOM05D003438 ORTHO05D004235 1.4e-255 886.7 885 54.5
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 6.7e-255 884.4 870 53.3
THA.LOC104821983 Tarenaya hassleriana HOM05D003438 ORTHO05D004235 9.7e-254 880.6 855 53.0
RcHm_v2.0_Chr4g0436941 Rosa chinensis HOM05D003438 ORTHO05D004235 3.7e-253 878.6 835 55.6
Eucgr.G02402 Eucalyptus grandis HOM05D003438 ORTHO05D004235 5.3e-252 874.8 867 53.3
PGR119G1138 Punica granatum HOM05D003438 ORTHO05D004235 7.0e-252 874.4 858 52.2
AUR62007840 Chenopodium quinoa HOM05D003438 ORTHO05D004235 3.5e-251 872.1 859 51.2
QL03p047145 Quercus lobata HOM05D003438 ORTHO05D004235 5.9e-251 871.3 1051 46.9
BraA02t06607Z Brassica rapa HOM05D003438 ORTHO05D004235 1.3e-250 870.2 857 51.6
A02p15460 Brassica napus HOM05D003438 ORTHO05D004235 2.9e-250 869.0 857 51.5
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 3.8e-250 868.6 865 52.1
Ciclev10030492m.g Citrus clementina HOM05D003438 ORTHO05D004235 5.0e-250 868.2 863 53.4
Thhalv10017999m.g Eutrema salsugineum HOM05D003438 ORTHO05D004235 5.0e-250 868.2 860 51.5
CsaV3_5G033620 Cucumis sativus L. HOM05D003438 ORTHO05D004235 9.4e-249 864.0 870 52.5
EL10Ac6g14628 Beta vulgaris HOM05D003438 ORTHO05D004235 2.7e-248 862.4 858 51.3
BolC2t08622H Brassica oleracea HOM05D003438 ORTHO05D004235 2.7e-248 862.4 860 51.3
C02p25570 Brassica napus HOM05D003438 ORTHO05D004235 6.1e-248 861.3 861 51.5
CARHR061750 Cardamine hirsuta HOM05D003438 ORTHO05D004235 8.0e-248 860.9 857 50.9
Ah.12g061010 Amaranthus hybridus HOM05D003438 ORTHO05D004235 5.2e-247 858.2 858 51.3
DCAR_023734 Daucus carota HOM05D003438 ORTHO05D004235 6.7e-247 857.8 860 52.9
Sp5g24020 Schrenkiella parvula HOM05D003438 ORTHO05D004235 2.2e-245 852.8 860 50.6
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 1.1e-244 850.5 861 50.3
Carub.0002s1552 Capsella rubella HOM05D003438 ORTHO05D004235 1.4e-244 850.1 859 51.2
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 1.4e-244 850.1 845 54.7
AT1G68890 Arabidopsis thaliana HOM05D003438 ORTHO05D004235 7.0e-244 847.8 860 50.5
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 3.6e-240 835.5 795 53.8
Hund25139 Selenicereus undatus HOM05D003438 ORTHO05D004235 4.4e-238 828.6 826 51.5
Aa31sc12G150 Aethionema arabicum HOM05D003438 ORTHO05D004235 9.8e-238 827.4 860 49.4
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 1.3e-237 827.0 779 54.8
CDE02G1987 Ceratophyllum demersum HOM05D003438 ORTHO05D004235 6.1e-232 808.1 869 48.4
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 4.4e-230 802.0 776 55.5
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 2.3e-226 789.6 850 51.1
MBI14_g11750_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D004235 6.6e-226 788.1 797 53.5
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 1.2e-224 783.9 783 52.1
Gohir.D02G132466 Gossypium hirsutum HOM05D003438 ORTHO05D004235 1.1e-220 770.8 825 49.7
ClCG05G023390 Citrullus lanatus HOM05D003438 ORTHO05D004235 1.4e-220 770.4 789 52.2
HPP92_019404 Vanilla planifolia HOM05D003438 ORTHO05D004235 1.9e-201 706.8 751 49.4
AUR62003034 Chenopodium quinoa HOM05D003438 ORTHO05D004235 1.3e-194 684.1 859 44.2
Rhsim13G0143500 Rhododendron simsii HOM05D003438 ORTHO05D004235 1.9e-188 663.7 787 48.3
Solyc04g005190.2 Solanum lycopersicum HOM05D003438 ORTHO05D004235 3.6e-184 649.4 600 57.2
Peaxi162Scf00396g01321 Petunia axillaris HOM05D003438 ORTHO05D004235 1.3e-181 641.0 588 56.3
SEGI_27375 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 7.1e-180 635.2 775 44.1
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 1.8e-170 604.0 822 42.1
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 4.0e-167 592.8 837 40.9
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 1.3e-165 587.8 576 53.1
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 2.5e-164 583.6 836 40.9
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 3.1e-159 566.6 837 40.3
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 1.6e-155 554.3 467 58.9
Zm00001eb245370 Zea mays HOM05D003438 ORTHO05D004235 3.3e-137 493.4 600 44.8
CSS0002113 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 1.8e-122 444.5 368 62.8
CSS0014289 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 1.5e-121 441.4 419 54.4
Actinidia07752 Actinidia chinensis HOM05D003438 ORTHO05D004235 4.9e-120 436.4 469 49.9
Dinv16579 Davidia involucrata HOM05D003438 ORTHO05D004235 7.8e-110 402.5 401 55.9
Psat7g028040 Pisum sativum HOM05D003438 ORTHO05D004235 3.7e-104 383.6 451 48.8
Ca_22508_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 4.6e-102 376.7 388 49.7
SEGI_33974 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 2.2e-96 357.8 476 40.5
Psat4g082840 Pisum sativum HOM05D003438 ORTHO05D004235 4.1e-95 353.6 319 56.7
PGSC0003DMG400001917 Solanum tuberosum HOM05D003438 ORTHO05D004235 4.0e-82 310.5 264 59.5
Peaxi162Scf00396g01316 Petunia axillaris HOM05D003438 ORTHO05D004235 5.2e-82 310.1 267 58.4
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 1.9e-76 291.6 1023 26.8
Solyc04g005200.4 Solanum lycopersicum HOM05D003438 ORTHO05D004235 2.0e-73 281.6 242 58.7
CBR_g48055 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-70 271.9 470 35.5
Os02g0581500 Oryza sativa ssp. japonica HOM05D003438 ORTHO05D004235 1.7e-69 268.5 271 52.0
Ca_22509_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 6.6e-69 266.5 311 47.3
Cpa.g.sc53.1 Carica papaya HOM05D003438 ORTHO05D004235 1.1e-68 265.8 251 55.4
Psat2g052880 Pisum sativum HOM05D003438 ORTHO05D004235 1.1e-68 265.8 236 58.9
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 1.9e-63 248.4 1111 25.0
VMungo1080G0040 Vigna mungo HOM05D003438 ORTHO05D000002 7.9e-62 243.0 203 56.7
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 1.9e-60 238.4 968 25.8
Gohir.A13G089245 Gossypium hirsutum HOM05D003438 ORTHO05D004235 1.7e-48 198.7 177 55.9
Actinidia30182 Actinidia chinensis HOM05D003438 ORTHO05D004235 5.5e-47 193.7 200 52.5
MD13G1054300 Malus domestica HOM05D003438 ORTHO05D004235 4.3e-44 184.1 178 56.7
FAN22G1421 Fragaria x ananassa HOM05D003438 ORTHO05D012326 1.3e-40 172.6 170 54.7
Zm00001eb245360 Zea mays HOM05D003438 ORTHO05D004235 3.2e-39 167.9 135 59.3
Actinidia30181 Actinidia chinensis HOM05D003438 ORTHO05D004235 8.8e-37 159.8 102 72.5
Psat2g033000 Pisum sativum HOM05D003438 ORTHO05D004235 2.8e-35 154.8 153 52.9
Psat0s4200g0080 Pisum sativum HOM05D002807 ORTHO05D004235 4.1e-26 124.4 121 52.9
Nitab4.5_0002491g0050 Nicotiana tabacum HOM05D003438 ORTHO05D004235 5.3e-26 124.0 127 55.9
CBR_g48056 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-25 122.5 527 22.6
HPP92_019403 Vanilla planifolia HOM05D003438 ORTHO05D004235 1.2e-22 112.8 120 47.5
Psat0s5438g0040 Pisum sativum HOM05D003438 ORTHO05D014892 2.0e-20 105.5 97 55.7
Psat7g103520 Pisum sativum HOM05D003438 ORTHO05D014892 2.0e-20 105.5 97 55.7
Psat2g135600 Pisum sativum HOM05D003438 ORTHO05D004235 9.7e-20 103.2 78 64.1
Psat2g052840 Pisum sativum HOM05D003438 ORTHO05D004235 9.1e-18 96.7 110 44.5
Psat6g122800 Pisum sativum HOM05D002960 ORTHO05D014892 7.2e-15 87.0 89 51.7
Glyma.01G000100 Glycine max HOM05D003438 ORTHO05D004235 3.6e-14 84.7 108 40.7
Lalb_Chr16g0392011 Lupinus albus HOM05D003438 ORTHO05D004235 3.0e-13 81.6 81 49.4
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 9.8e-12 76.6 79 51.9
Psat1g137120 Pisum sativum HOM05D003438 ORTHO05D014892 9.8e-12 76.6 79 51.9
Nitab4.5_0002491g0040 Nicotiana tabacum HOM05D016139 ORTHO05D014242 8.3e-11 73.6 100 37.0
Cfa008818 Carpinus fangiana HOM05D003438 ORTHO05D004235 1.1e-10 73.2 114 40.4
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 2.4e-10 72.0 301 24.9
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 4.1e-10 71.2 174 30.5
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 1.0e-08 66.6 258 27.9
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 2.2e-08 65.5 259 28.2
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 3.8e-08 64.7 319 24.8
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 6.5e-08 63.9 344 25.3
MBI04_g26975_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D014892 8.5e-08 63.5 45 64.4
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 1.5e-07 62.8 365 26.0
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.5e-07 62.0 320 25.3
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 3.2e-07 61.6 320 25.3
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 4.2e-07 61.2 328 25.0
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 5.5e-07 60.8 298 27.2
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 9.4e-07 60.1 300 26.7
Actinidia07743 Actinidia chinensis HOM05D003438 ORTHO05D004235 1.2e-06 59.7 59 55.9
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.2e-06 59.7 359 25.3
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.2e-06 59.7 304 26.6
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.6e-06 59.3 301 26.9
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.6e-06 59.3 289 26.0
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 2.7e-06 58.5 341 26.1
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 2.7e-06 58.5 340 25.6
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 2.7e-06 58.5 315 26.7
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 3.6e-06 58.2 340 25.3
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 4.7e-06 57.8 258 26.4
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 4.7e-06 57.8 258 26.0
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 4.7e-06 57.8 307 23.8
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 4.7e-06 57.8 361 25.2
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 4.7e-06 57.8 338 24.3
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 6.1e-06 57.4 284 26.8


User provided reference genes

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