Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 3.6e-191 671.4 331 100.0
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 1.5e-144 516.5 331 78.2
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 5.2e-142 508.1 331 76.7
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 4.4e-141 505.0 325 78.2
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 2.2e-140 502.7 332 75.9
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 3.7e-140 501.9 331 76.4
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 6.4e-140 501.1 331 75.8
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 4.1e-139 498.4 331 75.2
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 7.1e-139 497.7 331 75.2
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.6e-138 496.5 331 75.2
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.1e-138 496.1 331 75.2
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 2.7e-138 495.7 329 75.1
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 6.0e-138 494.6 331 75.2
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 1.3e-137 493.4 331 74.6
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 2.3e-137 492.7 325 75.4
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 3.0e-137 492.3 332 75.3
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 8.6e-137 490.7 331 75.2
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.1e-136 490.3 332 75.0
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.5e-136 490.0 331 74.3
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 1.5e-136 490.0 325 76.6
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.9e-136 489.6 342 73.4
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.9e-136 489.6 325 75.1
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 3.3e-136 488.8 331 74.3
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 5.6e-136 488.0 332 75.0
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 7.3e-136 487.6 331 74.3
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 7.3e-136 487.6 331 74.3
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 9.6e-136 487.3 332 74.4
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 1.6e-135 486.5 331 73.7
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 2.8e-135 485.7 335 74.3
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 1.1e-134 483.8 331 74.0
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.1e-134 483.8 330 73.9
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 1.8e-134 483.0 330 73.0
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 8.9e-134 480.7 332 72.9
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 8.9e-134 480.7 332 73.2
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.2e-133 480.3 330 72.7
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 1.5e-133 479.9 331 71.6
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.4e-133 478.8 331 73.4
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 1.3e-132 476.9 331 71.9
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 2.2e-132 476.1 327 73.7
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 6.4e-132 474.6 331 71.6
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 1.4e-131 473.4 328 71.0
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.4e-131 472.6 331 71.6
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 4.2e-131 471.9 331 71.0
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 4.2e-131 471.9 332 71.7
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 5.4e-131 471.5 331 71.0
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 7.1e-131 471.1 330 70.3
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 9.3e-131 470.7 327 71.6
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 1.2e-130 470.3 331 72.5
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.2e-130 470.3 331 71.9
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 3.5e-130 468.8 328 72.6
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 6.0e-130 468.0 325 71.1
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 6.0e-130 468.0 332 71.7
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 6.0e-130 468.0 366 68.0
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 2.3e-129 466.1 330 71.8
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 3.0e-129 465.7 327 71.9
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 3.0e-129 465.7 331 71.0
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 8.7e-129 464.2 331 70.7
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.5e-128 463.4 331 69.8
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 5.6e-128 461.5 331 70.4
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 9.6e-128 460.7 332 70.8
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.3e-127 460.3 325 71.4
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 2.1e-127 459.5 331 70.1
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 2.8e-127 459.1 334 69.2
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 4.8e-127 458.4 324 70.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.8e-126 456.4 315 72.4
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 7.6e-125 451.1 324 70.7
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 9.9e-125 450.7 323 68.7
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 9.9e-125 450.7 331 68.6
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 4.9e-124 448.4 311 72.7
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 3.5e-122 442.2 305 73.8
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 4.6e-122 441.8 344 66.9
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 1.0e-121 440.7 331 66.2
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 1.3e-121 440.3 324 66.4
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 1.9e-120 436.4 324 66.4
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 1.9e-120 436.4 324 66.4
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 1.9e-120 436.4 324 66.4
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 1.9e-120 436.4 324 66.0
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 3.3e-120 435.6 324 66.0
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 3.3e-120 435.6 324 65.7
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 4.3e-120 435.3 328 68.6
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 9.6e-120 434.1 331 64.7
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 1.6e-119 433.3 331 65.3
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 4.8e-119 431.8 331 63.4
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 4.8e-119 431.8 331 64.0
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 1.8e-118 429.9 301 74.1
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 2.0e-117 426.4 272 78.3
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.7e-116 423.3 331 67.7
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.1e-115 420.6 282 73.8
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 9.3e-115 417.5 303 71.6
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 3.5e-114 415.6 322 62.7
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.3e-111 407.1 270 74.8
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 4.8e-111 405.2 246 80.5
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.0e-108 397.5 300 65.3
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 3.5e-106 389.0 324 60.5
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 6.0e-106 388.3 264 72.3
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 1.5e-104 383.6 255 75.3
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 2.2e-95 353.2 271 66.4
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 3.3e-88 329.3 410 49.3
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 3.7e-87 325.9 281 58.0
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 7.7e-85 318.2 320 51.9
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 1.7e-84 317.0 325 50.8
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 1.0e-81 307.8 246 68.3
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 1.1e-80 304.3 208 68.8
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 8.3e-63 245.0 305 46.2
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.0e-61 240.4 291 50.9
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 1.4e-57 227.6 146 78.1
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 9.5e-51 204.9 325 36.6
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 6.1e-50 202.2 265 43.0
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 8.0e-50 201.8 117 77.8
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 1.1e-46 191.4 157 63.1
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 3.5e-45 186.4 146 67.1
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 5.0e-44 182.6 226 46.9
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.3e-39 167.9 175 54.3
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 4.7e-34 149.4 111 67.6
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 2.2e-31 140.6 252 37.3
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 3.3e-27 126.7 82 74.4
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 2.1e-21 107.5 106 54.7
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 4.7e-18 96.3 48 87.5
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 2.4e-17 94.0 60 75.0
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 2.2e-15 87.4 52 75.0
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.9e-15 87.0 49 81.6
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 2.4e-14 84.0 85 55.3
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 3.2e-14 83.6 55 72.7
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 4.2e-14 83.2 136 37.5
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 4.6e-13 79.7 56 66.1
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.9e-12 76.6 59 61.0
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 8.7e-12 75.5 59 66.1
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.7e-07 61.2 107 38.3
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 3.8e-07 60.1 54 57.4
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 6.4e-07 59.3 83 44.6
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.9e-06 57.8 212 27.8
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 2.4e-06 57.4 215 28.8
Potri.010G239500 Populus trichocarpa HOM05D005598 ORTHO05D006587 3.2e-06 57.0 59 54.2
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 4.2e-06 56.6 26 88.5
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 5.4e-06 56.2 42 64.3


User provided reference genes

Program Settings