Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 0.0e+00 2402.5 1254 100.0
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 0.0e+00 1250.0 1243 58.0
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 0.0e+00 1180.6 1184 57.9
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1096.6 1294 52.7
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 1.6e-300 1036.6 1230 53.3
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.6e-295 1020.0 1291 48.6
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 7.0e-288 994.6 1302 48.5
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 6.1e-284 981.5 1275 48.1
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 8.0e-276 954.5 1269 48.8
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 3.7e-273 945.7 1294 47.1
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 5.9e-271 938.3 1252 47.4
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 5.0e-270 935.3 1318 45.6
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 1.8e-267 926.8 1253 47.6
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 4.1e-264 915.6 1278 46.9
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 3.9e-262 909.1 1247 47.1
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 8.6e-262 907.9 1179 47.7
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.2e-260 904.0 1261 48.1
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.9e-257 892.1 1307 45.5
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.9e-253 880.2 1289 45.3
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 3.6e-252 875.9 1273 44.6
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 2.1e-247 860.1 1284 44.6
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 4.4e-242 842.4 1277 42.8
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 7.1e-240 835.1 1277 44.4
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 2.7e-239 833.2 1273 44.6
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 6.0e-239 832.0 1275 44.6
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 5.1e-238 828.9 1174 46.0
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 3.3e-237 826.2 1249 45.6
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 4.3e-237 825.9 1249 45.1
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.7e-233 813.9 1184 45.1
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 6.4e-233 812.0 1256 42.0
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 5.4e-232 808.9 1259 43.6
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 5.6e-229 798.9 1274 42.9
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.6e-228 797.3 1267 43.5
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 2.1e-228 797.0 936 50.1
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 4.8e-228 795.8 1241 43.8
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.1e-227 794.7 1277 42.4
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 5.8e-226 788.9 1255 44.1
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 9.9e-226 788.1 1349 41.1
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 4.2e-224 782.7 1203 44.6
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 7.6e-218 761.9 1244 42.5
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 6.4e-217 758.8 1273 41.7
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.2e-215 754.6 1258 41.9
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.8e-214 750.7 1298 41.5
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 1.9e-213 747.3 1268 42.3
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 5.6e-213 745.7 1260 42.4
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 8.2e-212 741.9 1267 42.1
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 2.6e-210 736.9 1269 41.1
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 6.0e-207 725.7 1233 40.6
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 1.9e-205 720.7 1198 42.2
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.8e-196 689.5 1280 39.1
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.3e-195 686.0 1316 38.5
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 4.5e-194 682.9 1149 40.3
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.9e-192 677.6 1274 39.1
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.2e-192 675.6 1339 37.8
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 4.7e-191 672.9 1272 39.3
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 2.6e-189 667.2 1280 39.8
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 4.4e-189 666.4 1332 36.3
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 5.3e-187 659.4 1217 39.9
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 7.0e-187 659.1 1202 40.3
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 9.1e-179 632.1 1192 38.6
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 1.5e-176 624.8 1097 37.8
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 7.2e-176 622.5 1138 39.5
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.1e-171 608.6 1191 38.4
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 3.2e-168 597.0 1266 39.0
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.6e-167 594.7 1184 36.5
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 5.7e-165 586.3 1191 37.7
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.3e-164 585.1 946 40.1
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 2.5e-160 570.9 785 44.2
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 9.5e-160 568.9 1253 38.5
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.8e-159 567.4 1211 35.5
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.1e-152 545.4 1236 34.5
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 1.6e-151 541.6 1205 36.0
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 9.8e-149 532.3 1291 34.2
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.2e-146 525.4 1230 33.8
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 8.0e-143 512.7 1230 32.8
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.8e-142 511.5 1254 33.3
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.6e-141 507.7 1235 34.5
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 2.6e-141 507.7 723 45.0
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 2.2e-140 504.6 1233 32.7
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 8.3e-140 502.7 1264 35.0
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 1.1e-139 502.3 1234 33.4
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 2.4e-139 501.1 1232 34.0
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.6e-135 488.4 690 44.1
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.6e-135 488.4 1453 31.8
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.1e-135 488.0 1223 32.5
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 6.8e-134 483.0 1158 32.4
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 5.8e-125 453.4 1236 32.1
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.2e-124 451.4 686 45.3
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.6e-111 408.7 798 36.0
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.5e-101 374.0 565 41.8
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 7.4e-96 356.7 1183 29.2
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 5.5e-91 340.5 489 47.6
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.3e-71 276.2 350 48.3
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 2.8e-71 275.0 295 54.2
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 2.6e-64 251.9 404 40.6
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 7.4e-64 250.4 344 44.2
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 1.7e-63 249.2 907 30.5
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 1.0e-49 203.4 712 29.5
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.8e-44 184.9 664 30.0
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 4.0e-41 174.9 705 25.7
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 4.0e-41 174.9 843 24.0
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.4e-40 171.4 426 34.5
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 8.3e-31 140.6 206 41.7
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 5.6e-27 127.9 200 33.5
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 5.6e-27 127.9 741 26.2
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 9.5e-27 127.1 211 35.5
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.8e-25 122.9 235 37.0
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 2.3e-25 122.5 200 36.0
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 2.1e-21 109.4 78 64.1
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 7.8e-21 107.5 180 35.6
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 1.5e-19 103.2 104 46.2
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 9.5e-19 100.5 135 49.6
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 6.2e-18 97.8 77 54.5
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 8.1e-18 97.4 77 53.2
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 8.9e-17 94.0 117 38.5
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 4.4e-16 91.7 74 52.7
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 7.6e-16 90.9 115 47.0
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 7.6e-16 90.9 115 38.3
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 3.0e-12 79.0 279 28.7
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 9.6e-11 73.9 103 41.7
SGA_v2.0_scaffold12G06172 Striga asiatica HOM05D002300 ORTHO05D002340 1.6e-10 73.2 393 23.4
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 3.6e-10 72.0 173 28.9
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 3.6e-10 72.0 122 44.3
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 1.4e-09 70.1 115 31.3
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 1.8e-09 69.7 123 33.3
SEGI_23247 Sequoiadendron giganteum HOM05D002300 ORTHO05D002340 2.4e-09 69.3 190 26.8
Atru.chr4.1262 Acer truncatum HOM05D002300 ORTHO05D002340 8.9e-09 67.4 511 19.8
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 8.9e-09 67.4 192 28.1
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 8.9e-09 67.4 61 52.5
Cc03_g12090 Coffea canephora HOM05D002300 ORTHO05D002340 2.0e-08 66.2 253 23.3
Nitab4.5_0006064g0040 Nicotiana tabacum HOM05D002300 ORTHO05D002340 5.8e-08 64.7 71 38.0
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 5.8e-08 64.7 65 46.2
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 2.9e-07 62.4 140 27.1
PSO675G3071 Papaver somniferum HOM05D002300 ORTHO05D002340 2.9e-07 62.4 316 22.5
AUR62023840 Chenopodium quinoa HOM05D002300 ORTHO05D002340 3.8e-07 62.0 158 24.7
ECA248G2483 Erigeron canadensis HOM05D002300 ORTHO05D002340 4.9e-07 61.6 179 25.7
PSO017G2971 Papaver somniferum HOM05D002300 ORTHO05D002340 4.9e-07 61.6 316 22.5
CAN.G540.6 Capsicum annuum HOM05D002300 ORTHO05D002340 6.4e-07 61.2 204 22.1
Actinidia22689 Actinidia chinensis HOM05D001879 ORTHO05D007648 8.4e-07 60.8 75 49.3
Peaxi162Scf00180g00216 Petunia axillaris HOM05D002300 ORTHO05D002340 1.4e-06 60.1 72 36.1
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 1.9e-06 59.7 51 49.0
VMungo1127G0975 Vigna mungo HOM05D002300 ORTHO05D002340 1.9e-06 59.7 158 24.7
AT2G43410 Arabidopsis thaliana HOM05D002300 ORTHO05D002340 2.4e-06 59.3 113 27.4
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 2.4e-06 59.3 113 28.3
AUR62002349 Chenopodium quinoa HOM05D002300 ORTHO05D002340 2.4e-06 59.3 122 26.2
AL4G42150 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 3.2e-06 58.9 113 27.4
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 3.2e-06 58.9 105 45.7
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 4.2e-06 58.5 113 30.1
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 4.2e-06 58.5 113 30.1
Cpa.g.sc9.316 Carica papaya HOM05D002300 ORTHO05D002340 4.2e-06 58.5 127 26.0
Thhalv10001307m.g Eutrema salsugineum HOM05D002300 ORTHO05D002340 4.2e-06 58.5 113 28.3
Pp3c11_21890 Physcomitrium patens HOM05D002300 ORTHO05D002340 4.2e-06 58.5 73 31.5
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 5.4e-06 58.2 258 29.5
Phvul.011G053300 Phaseolus vulgaris HOM05D002300 ORTHO05D002340 5.4e-06 58.2 158 25.3
unitig_0.g2401 Utricularia gibba HOM05D002300 ORTHO05D002340 5.4e-06 58.2 73 32.9
unitig_52.g17684 Utricularia gibba HOM05D002300 ORTHO05D002340 5.4e-06 58.2 73 32.9
BcaC07g40485 Brassica carinata HOM05D002300 ORTHO05D002340 7.1e-06 57.8 113 30.1
C08p34540 Brassica napus HOM05D002300 ORTHO05D002340 7.1e-06 57.8 113 30.1
BolC8t51055H Brassica oleracea HOM05D002300 ORTHO05D002340 7.1e-06 57.8 113 30.1
Sp4g25510 Schrenkiella parvula HOM05D002300 ORTHO05D002340 7.1e-06 57.8 113 28.3
arahy.Tifrunner.gnm1.ann1.L2JJZ6 Arachis hypogaea HOM05D002300 ORTHO05D002340 9.3e-06 57.4 71 33.8
arahy.Tifrunner.gnm1.ann1.RX7M1F Arachis hypogaea HOM05D002300 ORTHO05D002340 9.3e-06 57.4 71 33.8
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 9.3e-06 57.4 113 28.3
CAN.G164.9 Capsicum annuum HOM05D002300 ORTHO05D002340 9.3e-06 57.4 94 38.3
Lj3g0017734 Lotus japonicus HOM05D002300 ORTHO05D002340 9.3e-06 57.4 77 33.8


User provided reference genes

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