Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 2154.4 1067 100.0
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1612.8 1046 75.5
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1608.6 1046 76.2
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1585.5 1044 73.8
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1579.7 1045 74.2
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1578.1 1045 74.9
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1567.7 1045 73.9
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1564.3 1045 73.8
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1558.9 1051 73.9
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1557.7 1045 74.0
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1552.7 1045 72.9
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1550.4 1047 73.0
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1549.6 1045 72.6
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1546.9 1057 72.3
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1544.6 1045 72.7
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1543.5 1048 72.3
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1538.1 1045 71.9
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1536.2 1041 72.0
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1531.5 1046 71.5
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1530.8 1044 72.7
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1530.4 1045 72.0
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1530.4 1044 73.1
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1528.5 1044 72.8
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1527.3 1045 72.1
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1527.3 1045 71.7
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1527.3 1047 71.9
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1525.8 1045 72.0
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1520.4 1041 71.5
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1519.2 1041 72.5
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1518.8 1042 72.1
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1516.1 1045 71.8
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1515.0 1044 72.5
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1514.6 1045 71.0
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1513.8 1045 72.1
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1513.4 1133 68.3
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1512.3 1045 71.3
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1511.9 1064 70.9
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1511.9 1064 70.9
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1510.7 1049 70.8
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1508.8 1049 70.7
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1508.0 1044 71.6
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1503.8 1110 68.0
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1501.1 1043 70.8
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1500.7 1049 71.2
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1498.8 1042 71.1
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1498.4 1045 70.6
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1496.5 963 76.4
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1494.6 1046 70.1
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1494.6 1042 70.2
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1490.3 1046 69.7
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1489.6 1042 70.3
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1488.8 1044 71.1
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1483.8 1044 70.0
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1482.6 1042 70.2
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1478.0 1122 67.9
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1477.2 1053 70.3
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1474.1 1044 70.7
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1473.0 1052 70.4
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 1045 69.7
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1469.5 1042 69.3
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1045 68.3
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1466.8 1044 69.3
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1465.7 1046 68.2
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1464.9 1049 68.3
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1461.4 1045 68.5
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1461.0 1044 69.3
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1454.5 1131 65.4
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1449.9 1051 69.0
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1446.8 1042 68.3
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1444.9 1047 67.6
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1442.6 1046 66.9
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1441.8 1046 66.9
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1436.8 1047 68.4
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1421.8 1083 65.4
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1420.2 1042 68.0
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1417.9 1043 66.5
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1415.2 1047 66.0
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1414.1 938 74.7
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1399.4 1064 65.0
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1395.6 1066 65.2
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1391.7 1051 66.9
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1391.3 1043 66.0
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1385.2 1044 66.2
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1378.2 1251 56.8
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1375.9 1049 64.6
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1374.0 1052 64.4
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1363.6 965 69.8
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1362.1 848 78.9
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1303.5 851 76.1
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1245.0 851 72.0
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1206.0 801 73.7
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1193.3 963 65.2
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1140.9 790 70.6
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1089.7 1067 52.9
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 8.2e-306 1053.9 1052 51.2
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 1.3e-303 1046.6 778 67.0
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.5e-294 1016.5 1062 50.7
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 2.3e-279 966.1 632 76.1
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 4.7e-269 931.8 779 60.3
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 9.0e-244 847.8 518 78.8
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 1.1e-241 840.9 659 64.2
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 1.9e-238 830.1 941 50.6
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 2.5e-233 813.1 517 74.1
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.9e-215 752.7 704 55.8
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 4.1e-212 742.7 448 77.5
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.5e-211 740.7 448 77.0
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 3.4e-211 739.6 471 73.7
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 1.4e-209 734.2 453 76.4
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.4e-207 727.6 451 74.7
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 1.5e-203 714.1 479 69.9
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 2.2e-202 710.3 450 74.9
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 4.7e-200 702.6 450 72.4
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 3.0e-199 699.9 466 70.4
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 4.2e-193 679.5 462 69.7
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 2.3e-191 673.7 450 71.6
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 5.2e-183 646.0 464 66.4
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.4e-172 611.3 450 67.6
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 8.6e-170 602.1 418 70.8
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 6.1e-168 595.9 452 65.3
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 3.7e-165 586.6 450 63.3
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 9.5e-161 572.0 409 68.7
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 4.0e-159 566.6 390 72.1
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 9.2e-156 555.4 366 73.2
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 1.7e-154 551.2 366 71.6
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 3.9e-146 523.5 600 49.5
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 2.1e-139 501.1 1119 31.2
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 1.2e-126 458.8 267 80.9
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 2.1e-120 438.0 242 86.8
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 2.6e-118 431.0 286 74.5
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.0e-114 417.5 271 75.6
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 3.0e-106 391.0 318 61.9
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 5.1e-106 390.2 213 87.8
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 8.7e-106 389.4 243 76.5
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 3.3e-105 387.5 236 81.4
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 7.4e-105 386.3 266 72.9
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 1.6e-75 288.9 156 85.9
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 5.2e-66 257.3 198 63.1
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 2.9e-61 241.5 289 43.6
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 6.8e-58 230.3 193 61.1
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 7.8e-54 216.9 171 67.3
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 2.3e-45 188.7 155 62.6
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 5.0e-45 187.6 123 69.9
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 4.0e-42 177.9 177 54.8
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 8.9e-42 176.8 156 57.7
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.2e-30 139.8 85 68.2
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 6.0e-30 137.5 140 52.9
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.3e-29 136.3 140 52.1
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 1.5e-28 132.9 94 70.2
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 8.1e-27 127.1 83 68.7
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.4e-26 126.3 96 61.5
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 6.9e-26 124.0 94 64.9
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.3e-24 119.8 96 59.4
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 2.1e-22 112.5 81 69.1
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 1.0e-21 110.2 55 89.1
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 5.6e-20 104.4 79 64.6
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 3.6e-19 101.7 77 64.9
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 1.2e-17 96.7 62 74.2
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 3.2e-15 88.6 57 70.2
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 2.1e-14 85.9 58 63.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.5e-14 85.1 74 58.1
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 6.0e-14 84.3 53 75.5
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 1.0e-13 83.6 56 66.1
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 1.3e-13 83.2 74 59.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.4e-10 73.2 74 51.4
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 2.6e-09 68.9 41 73.2
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 4.5e-09 68.2 44 70.5
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 9.9e-09 67.0 44 65.9
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 5.5e-07 61.2 48 64.6
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.1e-06 59.3 47 57.4


User provided reference genes

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