Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020067.1 Olea europaea HOM05D000042 ORTHO05D000028 3.8e-28 127.5 65 100.0
MSTRG.15056 Avicennia marina HOM05D000042 ORTHO05D000028 3.2e-19 97.8 64 76.6
Cc05_g09250 Coffea canephora HOM05D000042 ORTHO05D000028 5.5e-19 97.1 64 71.9
Peaxi162Scf00154g00516 Petunia axillaris HOM05D000042 ORTHO05D000028 2.3e-17 91.7 70 71.4
GSVIVG01000802001 Vitis vinifera HOM05D000042 ORTHO05D000028 3.9e-17 90.9 64 67.2
Nitab4.5_0001121g0240 Nicotiana tabacum HOM05D000042 ORTHO05D000028 8.7e-17 89.7 71 71.8
Dinv12825 Davidia involucrata HOM05D000042 ORTHO05D000028 5.7e-16 87.0 65 67.7
TAR627G1125 Trochodendron aralioides HOM05D000042 ORTHO05D000028 9.6e-16 86.3 64 65.6
MSTRG.6758 Avicennia marina HOM05D000042 ORTHO05D000028 2.1e-15 85.1 59 67.8
Hma1.2p1_1974F.1_g309660 Hydrangea macrophylla HOM05D000042 ORTHO05D000028 6.3e-15 83.6 72 63.9
Nn6g34408 Nelumbo nucifera HOM05D000042 ORTHO05D000028 1.1e-14 82.8 64 68.8
vmacro12448 Vaccinium macrocarpon HOM05D000042 ORTHO05D000028 5.3e-14 80.5 76 56.6
PSO541G4298 Papaver somniferum HOM05D000042 ORTHO05D000028 2.0e-13 78.6 66 65.2
PSO675G6626 Papaver somniferum HOM05D000042 ORTHO05D000028 2.0e-13 78.6 66 65.2
SalBow8G0272 Salvia bowleyana HOM05D000042 ORTHO05D000028 2.0e-13 78.6 67 67.2
COL.COLO4_33725 Corchorus olitorius HOM05D000042 ORTHO05D000028 4.5e-13 77.4 67 65.7
Sopen07g029280 Solanum pennellii HOM05D000042 ORTHO05D000028 7.6e-13 76.6 74 56.8
CAN.G585.57 Capsicum annuum HOM05D000042 ORTHO05D000028 1.0e-12 76.3 70 60.0
Manes.02G085501 Manihot esculenta HOM05D000042 ORTHO05D000028 1.0e-12 76.3 68 64.7
SalBow7G2563 Salvia bowleyana HOM05D000042 ORTHO05D000028 1.3e-12 75.9 58 72.4
Cpa.g.sc50.73 Carica papaya HOM05D000042 ORTHO05D000028 2.2e-12 75.1 66 66.7
Duzib147G1257 Durio zibethinus HOM05D000042 ORTHO05D000028 2.9e-12 74.7 63 63.5
QL08p043819 Quercus lobata HOM05D000042 ORTHO05D000028 2.9e-12 74.7 66 62.1
Dinv04546 Davidia involucrata HOM05D000042 ORTHO05D000028 5.0e-12 73.9 65 60.0
TAR626G0241 Trochodendron aralioides HOM05D000042 ORTHO05D000028 5.0e-12 73.9 64 57.8
CSS0031383 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 8.4e-12 73.2 67 59.7
Aqoxy4G00189 Aquilegia oxysepala HOM05D000042 ORTHO05D000028 1.1e-11 72.8 64 54.7
Ca_18595_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 1.4e-11 72.4 65 64.6
Duzib264G1243 Durio zibethinus HOM05D000042 ORTHO05D000028 1.4e-11 72.4 60 68.3
Thecc.01G160300 Theobroma cacao HOM05D000042 ORTHO05D000028 1.4e-11 72.4 67 61.2
Lalb_Chr10g0106751 Lupinus albus HOM05D000042 ORTHO05D000028 3.2e-11 71.2 66 66.7
QL05p052466 Quercus lobata HOM05D000042 ORTHO05D000028 7.2e-11 70.1 66 59.1
AUR62035850 Chenopodium quinoa HOM05D000042 ORTHO05D000028 9.3e-11 69.7 65 53.8
Manes.01G128500 Manihot esculenta HOM05D000042 ORTHO05D000028 9.3e-11 69.7 66 62.1
SGA_v2.0_scaffold9G04908 Striga asiatica HOM05D000042 ORTHO05D000028 1.2e-10 69.3 68 61.8
Ciclev10033829m.g Citrus clementina HOM05D000042 ORTHO05D000028 1.6e-10 68.9 70 54.3
TAR629G2386 Trochodendron aralioides HOM05D000042 ORTHO05D000028 1.6e-10 68.9 64 57.8
Phvul.006G034300 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 2.1e-10 68.6 67 62.7
EL10Ac8g19847 Beta vulgaris HOM05D000042 ORTHO05D000028 2.7e-10 68.2 65 52.3
DCAR_031434 Daucus carota HOM05D000042 ORTHO05D000028 2.7e-10 68.2 65 53.8
HPP92_020059 Vanilla planifolia HOM05D000042 ORTHO05D000028 2.7e-10 68.2 66 54.5
CDE10G0879 Ceratophyllum demersum HOM05D000042 ORTHO05D000028 4.6e-10 67.4 63 57.1
MBI07_g00495_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000028 6.1e-10 67.0 61 55.7
Oeu021545.4 Olea europaea HOM05D000042 ORTHO05D000028 6.1e-10 67.0 63 54.0
Solyc07g055920.4 Solanum lycopersicum HOM05D000042 ORTHO05D000028 6.1e-10 67.0 78 51.3
VMungo0540G1953 Vigna mungo HOM05D000042 ORTHO05D000028 1.0e-09 66.2 68 60.3
Haze_05446 Corylus avellana HOM05D000042 ORTHO05D000028 1.3e-09 65.9 65 53.8
Psat5g197560 Pisum sativum HOM05D000042 ORTHO05D000028 1.3e-09 65.9 66 62.1
GSVIVG01021303001 Vitis vinifera HOM05D000042 ORTHO05D000028 1.3e-09 65.9 65 50.8
CSS0009372 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.8e-09 65.5 55 61.8
CDE10G0315 Ceratophyllum demersum HOM05D000042 ORTHO05D000028 1.8e-09 65.5 63 55.6
Lj1A1178G69 Lonicera japonica HOM05D000042 ORTHO05D000028 1.8e-09 65.5 67 55.2
TWI53G0650 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 1.8e-09 65.5 65 50.8
Cc02_g16110 Coffea canephora HOM05D000042 ORTHO05D000028 2.3e-09 65.1 65 52.3
Glyma.02G287700 Glycine max HOM05D000042 ORTHO05D000028 2.3e-09 65.1 68 63.2
PGR142G2120 Punica granatum HOM05D000042 ORTHO05D000028 2.3e-09 65.1 73 58.9
TWI09G0262 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 2.3e-09 65.1 65 50.8
Atru.chr6.1594 Acer truncatum HOM05D000042 ORTHO05D000028 3.0e-09 64.7 61 65.6
Atru.chr6.1597 Acer truncatum HOM05D000042 ORTHO05D000028 3.0e-09 64.7 61 65.6
MSTRG.7446 Avicennia marina HOM05D000042 ORTHO05D000028 3.9e-09 64.3 65 52.3
Sc05g0006730 Simmondsia chinensis HOM05D000042 ORTHO05D000028 3.9e-09 64.3 66 53.0
Prupe.4G070500 Prunus persica HOM05D000042 ORTHO05D000028 5.1e-09 63.9 64 53.1
Gohir.D04G037800 Gossypium hirsutum HOM05D000042 ORTHO05D000028 6.7e-09 63.5 66 62.1
Gorai.012G042600 Gossypium raimondii HOM05D000042 ORTHO05D000028 6.7e-09 63.5 66 62.1
Atru.chr10.1484 Acer truncatum HOM05D000042 ORTHO05D000028 8.7e-09 63.2 65 50.8
Atru.chr10.1486 Acer truncatum HOM05D000042 ORTHO05D000028 8.7e-09 63.2 65 50.8
MD05G1293700 Malus domestica HOM05D000042 ORTHO05D000028 8.7e-09 63.2 66 53.0
Phvul.008G190600 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 8.7e-09 63.2 64 62.5
Duzib160G0496 Durio zibethinus HOM05D000042 ORTHO05D000028 1.5e-08 62.4 63 52.4
Glyma.08G310100 Glycine max HOM05D000042 ORTHO05D000028 1.5e-08 62.4 68 61.8
Gohir.A05G377900 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.9e-08 62.0 64 60.9
Lalb_Chr04g0248701 Lupinus albus HOM05D000042 ORTHO05D000028 1.9e-08 62.0 65 60.0
Cfa001063 Carpinus fangiana HOM05D000042 ORTHO05D000028 2.5e-08 61.6 65 52.3
Glyma.14G027251 Glycine max HOM05D000042 ORTHO05D000028 2.5e-08 61.6 65 60.0
HPP92_009199 Vanilla planifolia HOM05D000042 ORTHO05D000028 2.5e-08 61.6 63 50.8
Prupe.3G170600 Prunus persica HOM05D000042 ORTHO05D000028 3.3e-08 61.2 69 62.3
Cfa022918 Carpinus fangiana HOM05D000042 ORTHO05D000028 4.3e-08 60.8 61 57.4
PGSC0003DMG400028442 Solanum tuberosum HOM05D000042 ORTHO05D000028 4.3e-08 60.8 71 52.1
Aqoxy1G01895 Aquilegia oxysepala HOM05D000042 ORTHO05D000028 5.7e-08 60.5 60 50.0
MSTRG.14749 Avicennia marina HOM05D000042 ORTHO05D000028 5.7e-08 60.5 67 49.3
Lsat_1_v5_gn_4_47080 Lactuca sativa HOM05D000042 ORTHO05D000028 7.4e-08 60.1 66 54.5
Manes.17G062000 Manihot esculenta HOM05D000042 ORTHO05D000028 7.4e-08 60.1 63 50.8
CAN.G411.1 Capsicum annuum HOM05D000042 ORTHO05D000028 9.7e-08 59.7 71 53.5
DCAR_027961 Daucus carota HOM05D000042 ORTHO05D000028 9.7e-08 59.7 61 50.8
MD09G1155200 Malus domestica HOM05D000042 ORTHO05D000028 9.7e-08 59.7 67 58.2
Medtr3g452380 Medicago truncatula HOM05D000042 ORTHO05D000028 9.7e-08 59.7 69 59.4
Oeu004265.3 Olea europaea HOM05D000042 ORTHO05D000028 1.3e-07 59.3 59 50.8
Thecc.06G160600 Theobroma cacao HOM05D000042 ORTHO05D000028 1.3e-07 59.3 63 50.8
DCAR_003963 Daucus carota HOM05D000042 ORTHO05D000028 1.6e-07 58.9 66 48.5
SGA_v2.0_scaffold1G00107 Striga asiatica HOM05D000042 ORTHO05D000028 1.6e-07 58.9 61 54.1
ATR0602G275 Amborella trichopoda HOM05D000042 ORTHO05D000028 2.2e-07 58.5 59 57.6
CSS0003060 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 2.2e-07 58.5 66 51.5
Ciclev10016427m.g Citrus clementina HOM05D000042 ORTHO05D000028 2.2e-07 58.5 65 47.7
DCAR_021307 Daucus carota HOM05D000042 ORTHO05D000028 2.2e-07 58.5 73 45.2
Glyma.18G105800 Glycine max HOM05D000042 ORTHO05D000028 2.2e-07 58.5 64 59.4
Manes.15G115500 Manihot esculenta HOM05D000042 ORTHO05D000028 2.2e-07 58.5 63 47.6
CiPaw.09G133500 Carya illinoinensis HOM05D000042 ORTHO05D000028 2.8e-07 58.2 66 51.5
MD10G1271000 Malus domestica HOM05D000042 ORTHO05D000028 2.8e-07 58.2 64 48.4
Gohir.A10G033100 Gossypium hirsutum HOM05D000042 ORTHO05D000028 4.8e-07 57.4 65 46.2
Gorai.N017200 Gossypium raimondii HOM05D000042 ORTHO05D000028 4.8e-07 57.4 65 46.2
Sopen02g020720 Solanum pennellii HOM05D000042 ORTHO05D000028 4.8e-07 57.4 73 49.3
AUR62027653 Chenopodium quinoa HOM05D000042 ORTHO05D000028 6.3e-07 57.0 56 51.8
Rhsim06G0119100 Rhododendron simsii HOM05D000042 ORTHO05D000028 6.3e-07 57.0 63 47.6
TAR381G0328 Trochodendron aralioides HOM05D000042 ORTHO05D000028 6.3e-07 57.0 63 50.8
arahy.Tifrunner.gnm1.ann1.7U2XF6 Arachis hypogaea HOM05D000042 ORTHO05D000028 8.2e-07 56.6 75 53.3
arahy.Tifrunner.gnm1.ann1.FNSI1P Arachis hypogaea HOM05D000042 ORTHO05D000028 1.1e-06 56.2 75 52.0
Gohir.D10G033800 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.1e-06 56.2 65 44.6
Lj6g0013579 Lotus japonicus HOM05D000042 ORTHO05D000028 1.1e-06 56.2 72 56.9
Potri.004G064300 Populus trichocarpa HOM05D000042 ORTHO05D000028 1.1e-06 56.2 64 46.9
TWI73G1154 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 1.1e-06 56.2 61 45.9
FAN02G3289 Fragaria x ananassa HOM05D000042 ORTHO05D000028 1.4e-06 55.8 69 59.4
Gohir.D10G033700 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.4e-06 55.8 65 44.6
Gorai.011G035500 Gossypium raimondii HOM05D000042 ORTHO05D000028 1.4e-06 55.8 65 44.6
HanXRQChr16g0519321 Helianthus annuus HOM05D000042 ORTHO05D000028 1.4e-06 55.8 66 51.5
CiPaw.10G098600 Carya illinoinensis HOM05D000042 ORTHO05D000028 1.8e-06 55.5 67 49.3
FvH4_6g37880 Fragaria vesca HOM05D000042 ORTHO05D000028 1.8e-06 55.5 69 58.0
RcHm_v2.0_Chr2g0151031 Rosa chinensis HOM05D000042 ORTHO05D000028 1.8e-06 55.5 69 55.1
CAN.G257.130 Capsicum annuum HOM05D000042 ORTHO05D000028 2.4e-06 55.1 72 52.8
Eucgr.K01195 Eucalyptus grandis HOM05D000042 ORTHO05D000028 2.4e-06 55.1 78 52.6
Lsat_1_v5_gn_7_27060 Lactuca sativa HOM05D000042 ORTHO05D000028 2.4e-06 55.1 66 50.0
Nitab4.5_0005138g0050 Nicotiana tabacum HOM05D000042 ORTHO05D000028 2.4e-06 55.1 71 46.5
Sed0004665 Sechium edule HOM05D000042 ORTHO05D000028 2.4e-06 55.1 64 51.6
Duzib192G0657 Durio zibethinus HOM05D000042 ORTHO05D000028 3.1e-06 54.7 55 52.7
Gohir.A10G033000 Gossypium hirsutum HOM05D000042 ORTHO05D000028 3.1e-06 54.7 65 43.1
MD17G1141300 Malus domestica HOM05D000042 ORTHO05D000028 3.1e-06 54.7 61 55.7
FAN09G4878 Fragaria x ananassa HOM05D000042 ORTHO05D000028 4.1e-06 54.3 69 56.5
Potri.011G075800 Populus trichocarpa HOM05D000042 ORTHO05D000028 4.1e-06 54.3 63 47.6
CANSAT64G0313 Cannabis sativa HOM05D000042 ORTHO05D000028 5.3e-06 53.9 93 41.9
ECA234G3521 Erigeron canadensis HOM05D000042 ORTHO05D000028 6.9e-06 53.5 67 52.2
ATR1136G181 Amborella trichopoda HOM05D000042 ORTHO05D000028 9.0e-06 53.1 62 51.6
CARHR169170 Cardamine hirsuta HOM05D000042 ORTHO05D000028 9.0e-06 53.1 71 45.1
HanXRQChr05g0147261 Helianthus annuus HOM05D000042 ORTHO05D000028 9.0e-06 53.1 66 53.0
Zm00001eb284010 Zea mays HOM05D000042 ORTHO05D000028 9.0e-06 53.1 68 47.1


User provided reference genes

Program Settings