Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 1.1e-19 99.0 50 100.0
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 1.9e-19 98.2 49 98.0
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 5.5e-19 96.7 49 98.0
Oeu007990.1 Olea europaea HOM05D001534 ORTHO05D004495 5.5e-19 96.7 50 96.0
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 7.2e-19 96.3 49 93.9
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 7.2e-19 96.3 49 93.9
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 7.2e-19 96.3 49 93.9
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 7.2e-19 96.3 49 95.9
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 1.2e-18 95.5 49 93.9
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.6e-18 95.1 49 95.9
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 2.1e-18 94.7 49 93.9
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 2.1e-18 94.7 49 93.9
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.1e-18 94.7 49 93.9
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.1e-18 94.7 49 93.9
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.1e-18 94.7 49 93.9
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.1e-18 94.7 49 93.9
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 2.1e-18 94.7 49 93.9
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 2.1e-18 94.7 49 93.9
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 2.1e-18 94.7 49 93.9
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 2.7e-18 94.4 49 91.8
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 2.7e-18 94.4 49 93.9
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 2.7e-18 94.4 49 91.8
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 2.7e-18 94.4 49 91.8
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 3.6e-18 94.0 49 89.8
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 4.6e-18 93.6 49 91.8
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 4.6e-18 93.6 49 91.8
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 4.6e-18 93.6 49 93.9
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 6.1e-18 93.2 49 87.8
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 6.1e-18 93.2 49 91.8
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 6.1e-18 93.2 49 91.8
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 6.1e-18 93.2 49 91.8
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 6.1e-18 93.2 49 91.8
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 7.9e-18 92.8 49 89.8
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 7.9e-18 92.8 49 89.8
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 7.9e-18 92.8 49 91.8
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 89.8
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 89.8
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 87.8
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 89.8
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 89.8
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 87.8
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 87.8
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 87.8
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 93.9
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 87.8
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 87.8
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 1.0e-17 92.4 49 87.8
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 1.8e-17 91.7 49 87.8
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 1.8e-17 91.7 49 91.8
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.8e-17 91.7 49 85.7
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 1.8e-17 91.7 49 87.8
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 2.3e-17 91.3 49 85.7
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 2.3e-17 91.3 49 89.8
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.3e-17 91.3 49 89.8
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 2.3e-17 91.3 49 89.8
Psat5g174000 Pisum sativum HOM05D001534 ORTHO05D004495 2.3e-17 91.3 50 88.0
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 3.0e-17 90.9 49 85.7
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 3.0e-17 90.9 49 87.8
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 3.0e-17 90.9 49 87.8
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 3.0e-17 90.9 49 87.8
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 3.0e-17 90.9 49 87.8
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 3.0e-17 90.9 49 87.8
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 3.9e-17 90.5 49 89.8
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.9e-17 90.5 49 89.8
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.9e-17 90.5 49 89.8
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.9e-17 90.5 49 89.8
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.9e-17 90.5 49 89.8
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 3.9e-17 90.5 49 87.8
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 5.1e-17 90.1 49 87.8
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 6.7e-17 89.7 49 91.8
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 6.7e-17 89.7 49 87.8
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 8.8e-17 89.4 49 87.8
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 8.8e-17 89.4 49 85.7
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 8.8e-17 89.4 49 87.8
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 1.1e-16 89.0 49 87.8
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 1.1e-16 89.0 49 85.7
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 1.1e-16 89.0 49 85.7
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 1.5e-16 88.6 49 83.7
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 2.0e-16 88.2 49 81.6
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 2.0e-16 88.2 49 85.7
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 2.0e-16 88.2 49 85.7
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 2.0e-16 88.2 49 85.7
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 2.0e-16 88.2 49 85.7
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 3.3e-16 87.4 49 87.8
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 3.3e-16 87.4 49 87.8
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 3.3e-16 87.4 49 87.8
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 3.3e-16 87.4 49 87.8
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 5.7e-16 86.7 49 79.6
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 5.7e-16 86.7 51 86.3
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 5.7e-16 86.7 49 83.7
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 7.4e-16 86.3 49 81.6
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 9.7e-16 85.9 49 85.7
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 9.7e-16 85.9 49 85.7
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 9.7e-16 85.9 49 83.7
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 9.7e-16 85.9 49 83.7
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 1.3e-15 85.5 49 83.7
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 1.3e-15 85.5 49 83.7
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 1.3e-15 85.5 49 75.5
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 1.3e-15 85.5 49 75.5
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 1.7e-15 85.1 49 77.6
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 2.2e-15 84.7 49 83.7
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 2.2e-15 84.7 49 79.6
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 3.7e-15 84.0 49 81.6
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 4.8e-15 83.6 49 83.7
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 4.8e-15 83.6 49 83.7
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 6.3e-15 83.2 49 83.7
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 8.2e-15 82.8 49 83.7
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 8.2e-15 82.8 49 83.7
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 8.2e-15 82.8 49 81.6
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 8.2e-15 82.8 49 81.6
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 8.2e-15 82.8 49 81.6
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 8.2e-15 82.8 49 81.6
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 1.1e-14 82.4 49 81.6
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 1.1e-14 82.4 49 81.6
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 1.1e-14 82.4 49 81.6
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 1.1e-14 82.4 49 81.6
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 1.1e-14 82.4 49 81.6
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 1.4e-14 82.0 50 84.0
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.4e-14 82.0 49 81.6
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 1.4e-14 82.0 49 81.6
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 1.4e-14 82.0 49 81.6
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 2.4e-14 81.3 49 75.5
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 3.1e-14 80.9 49 79.6
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.1e-14 80.9 49 79.6
FAN25G3175 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.1e-14 80.9 49 79.6
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 3.1e-14 80.9 49 77.6
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 5.3e-14 80.1 49 79.6
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 6.9e-14 79.7 49 73.5
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 6.9e-14 79.7 49 73.5
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 6.9e-14 79.7 49 77.6
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 9.1e-14 79.3 49 75.5
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 9.1e-14 79.3 49 73.5
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 9.1e-14 79.3 49 75.5
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 1.2e-13 79.0 49 73.5
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 1.2e-13 79.0 49 77.6
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 1.5e-13 78.6 49 79.6
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 2.6e-13 77.8 50 80.0
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 2.6e-13 77.8 49 71.4
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 3.4e-13 77.4 49 79.6
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 3.4e-13 77.4 49 79.6
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 3.4e-13 77.4 49 79.6
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 3.4e-13 77.4 49 75.5
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 7.7e-13 76.3 49 77.6
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 7.7e-13 76.3 49 77.6
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 7.7e-13 76.3 49 77.6
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 7.7e-13 76.3 49 77.6
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 7.7e-13 76.3 49 77.6
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 7.7e-13 76.3 49 71.4
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 1.0e-12 75.9 49 75.5
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 1.0e-12 75.9 49 75.5
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 2.9e-12 74.3 49 71.4
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 8.5e-12 72.8 49 71.4
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 8.5e-12 72.8 49 69.4
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 2.5e-11 71.2 49 71.4
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 2.5e-11 71.2 76 50.0
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 5.5e-11 70.1 49 65.3
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 4.7e-10 67.0 51 66.7
SGA_v2.0_scaffold478G52224 Striga asiatica HOM05D001534 ORTHO05D004495 5.1e-09 63.5 33 93.9
Aa31LG3G11260 Aethionema arabicum HOM05D001534 ORTHO05D004495 2.6e-08 61.2 33 84.8
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 2.6e-08 61.2 49 49.0
Sabra16G0237300 Salix brachista HOM05D001534 ORTHO05D004495 5.7e-08 60.1 33 87.9
Lalb_Chr20g0115821 Lupinus albus HOM05D001534 ORTHO05D004495 7.4e-08 59.7 33 84.8
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 7.4e-08 59.7 49 51.0
arahy.Tifrunner.gnm1.ann1.UV2YJP Arachis hypogaea HOM05D001534 ORTHO05D004495 9.7e-08 59.3 33 87.9
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 3.7e-07 57.4 49 46.9
vmacro09683 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 3.7e-07 57.4 37 83.8
Nn5g26968 Nelumbo nucifera HOM05D001534 ORTHO05D004495 8.2e-07 56.2 33 78.8
Nitab4.5_0001049g0020 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.4e-06 55.5 33 78.8
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 7.0e-06 53.1 49 53.1
SHI26567 Sapria himalayana HOM05D001534 ORTHO05D004495 9.1e-06 52.8 33 66.7


User provided reference genes

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