Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.1e-176 623.2 321 100.0
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 4.4e-146 521.5 321 85.7
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 2.0e-138 496.1 321 81.3
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 8.4e-137 490.7 321 79.4
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 1.9e-136 489.6 321 79.1
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 4.2e-136 488.4 321 79.1
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.1e-135 486.1 326 76.1
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 3.5e-135 485.3 321 79.1
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 2.3e-134 482.6 322 78.6
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.3e-134 482.6 321 78.2
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 8.7e-134 480.7 321 78.2
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.1e-133 480.3 321 78.2
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 3.3e-133 478.8 319 77.7
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.3e-132 476.9 319 77.4
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.8e-132 475.7 321 78.5
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.6e-132 475.3 323 77.7
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 3.6e-132 475.3 321 76.6
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 4.8e-132 474.9 321 77.3
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.8e-132 474.9 321 78.2
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.1e-132 474.2 321 77.3
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 8.1e-132 474.2 321 76.0
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 8.1e-132 474.2 319 77.1
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.4e-131 473.4 321 77.3
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.4e-131 473.4 322 78.6
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 3.1e-131 472.2 319 76.8
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 9.0e-131 470.7 319 76.5
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 3.4e-130 468.8 321 76.0
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 3.4e-130 468.8 321 76.0
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 5.8e-130 468.0 320 76.6
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 7.6e-130 467.6 321 75.4
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 2.4e-128 462.6 321 76.3
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 1.2e-127 460.3 323 74.3
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.6e-127 459.9 321 73.8
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.5e-127 458.8 319 74.9
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 7.9e-127 457.6 321 75.1
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 7.9e-127 457.6 319 74.9
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 7.9e-127 457.6 309 76.4
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.0e-126 457.2 321 75.7
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 3.0e-126 455.7 320 75.0
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 6.7e-126 454.5 321 73.2
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.5e-125 453.4 303 78.2
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.5e-125 452.6 352 69.6
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.3e-124 450.3 321 72.3
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.6e-124 449.9 335 71.3
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.8e-124 449.1 322 75.2
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.4e-123 446.8 319 72.4
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 6.9e-123 444.5 323 74.0
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 1.2e-122 443.7 322 73.0
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.2e-122 443.7 321 72.9
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 9.9e-122 440.7 320 72.5
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.3e-121 440.3 321 72.9
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.9e-121 439.1 321 72.0
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 2.9e-121 439.1 321 71.7
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 3.8e-121 438.7 321 72.0
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 3.2e-120 435.6 297 76.4
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 5.5e-120 434.9 320 72.2
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.1e-119 433.0 320 71.9
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 3.0e-118 429.1 321 71.7
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 6.7e-118 427.9 321 70.1
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 8.7e-118 427.6 321 70.7
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 8.7e-118 427.6 320 71.2
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.1e-117 427.2 321 69.5
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 2.8e-116 422.5 321 70.4
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 4.8e-116 421.8 323 70.9
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 4.8e-116 421.8 326 68.4
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.1e-115 420.6 321 70.1
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.4e-115 420.2 321 68.5
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 2.4e-115 419.5 321 69.5
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 2.4e-115 419.5 322 68.6
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 2.4e-115 419.5 323 69.0
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.1e-115 419.1 321 71.0
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.5e-114 416.8 357 64.7
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 3.4e-114 415.6 321 66.4
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.3e-113 413.7 319 67.7
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 2.2e-113 412.9 321 67.6
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 2.9e-113 412.5 322 69.9
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 4.9e-113 411.8 321 68.2
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.5e-113 411.4 319 67.4
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 8.4e-113 411.0 326 69.6
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.4e-112 410.2 321 68.5
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.5e-112 409.5 319 67.4
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 4.2e-112 408.7 323 66.9
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 3.5e-111 405.6 414 57.7
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.0e-110 404.1 266 78.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 2.3e-110 402.9 322 67.1
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.0e-110 402.5 337 64.4
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 5.1e-110 401.7 323 68.1
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 5.1e-110 401.7 323 68.1
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.1e-109 400.6 321 66.0
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.5e-109 400.2 319 68.3
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.5e-109 399.4 339 63.4
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 4.8e-108 395.2 321 68.2
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 4.1e-107 392.1 321 66.4
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 2.0e-106 389.8 321 64.5
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 2.0e-106 389.8 321 64.5
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.3e-105 387.1 319 66.1
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.3e-105 387.1 260 78.1
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 5.0e-105 385.2 314 66.2
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 5.0e-105 385.2 322 65.2
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.7e-103 379.4 322 63.4
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 7.9e-103 377.9 319 65.2
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 2.3e-102 376.3 321 63.2
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 3.0e-102 375.9 328 62.8
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.9e-102 375.6 320 64.7
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 3.9e-102 375.6 321 63.2
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 5.1e-102 375.2 322 62.4
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.0e-101 373.2 322 64.9
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.5e-101 372.9 322 64.9
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 2.2e-100 369.8 320 64.1
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.1e-99 367.5 321 62.9
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.8e-99 366.7 322 63.4
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.3e-99 365.2 327 63.0
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 8.5e-97 357.8 322 61.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 3.2e-96 355.9 192 91.7
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.6e-95 353.6 326 60.7
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.4e-94 350.5 321 61.1
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.8e-94 350.1 321 60.4
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 3.9e-94 349.0 256 69.5
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 3.7e-92 342.4 321 59.8
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 6.3e-92 341.7 237 75.1
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 2.6e-90 336.3 321 60.7
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 3.9e-86 322.4 322 55.6
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 1.5e-85 320.5 290 63.1
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-83 313.9 288 60.4
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 9.1e-83 311.2 268 63.8
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 7.7e-82 308.1 317 54.9
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 5.5e-80 302.0 314 54.1
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 9.7e-77 291.2 192 72.9
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.3e-76 290.8 216 69.0
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 4.2e-72 275.8 191 73.3
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.6e-71 273.9 326 48.2
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 7.5e-69 265.0 324 47.5
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 4.4e-61 239.2 323 46.7
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.7e-60 236.1 319 47.3
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 2.2e-52 210.3 324 44.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 2.2e-52 210.3 324 44.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 2.2e-52 210.3 324 44.8
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 9.5e-48 194.9 293 45.4
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.1e-46 189.9 105 89.5
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 4.9e-44 182.6 107 84.1
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 5.6e-40 169.1 111 75.7
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.3e-36 157.9 154 57.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.7e-36 156.4 154 56.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.7e-36 156.4 154 56.5
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 2.1e-34 150.6 180 49.4
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 6.0e-34 149.1 84 88.1
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 2.1e-31 140.6 188 42.6
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.4e-27 127.1 120 58.3
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 9.3e-27 125.2 136 52.9
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.7e-26 123.6 73 82.2
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.7e-26 123.6 73 82.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 7.8e-26 122.1 72 81.9
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.5e-21 107.8 95 65.3
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.3e-20 104.8 68 73.5
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 7.1e-19 99.0 130 45.4
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 3.5e-18 96.7 85 57.6
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 5.1e-17 92.8 217 36.4
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 3.1e-14 83.6 59 69.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.8e-13 79.3 225 31.1
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 9.9e-13 78.6 86 51.2
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 9.9e-13 78.6 58 70.7
PRCOL_00000755 Prasinoderma coloniale HOM05D004410 ORTHO05D333942 5.3e-06 56.2 67 46.3


User provided reference genes

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